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LCNS mutant strains.

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Total of 35 mutant strains in ten LCNS sequences are available as of November 18, 2008. (Ref. Sakuraba et al. Mammalian Genome, 2008.)

@
Locus name
Allele name
mutation *1
Mutation site in the 21bp context
Mouse /UCSC
(Human/UCSC)
LCNS112
Rgsc1483
A422T
ACATTTAAATAGAAGCACTGG
112/mm9
(112/hg18)
LCNS112
Rgsc1082
T275C
TCAGAATGCGTAAACTTGCAA
112/mm9
(112/hg18)
LCNS112
Rgsc1482
A340G
ATGGGTTGATAAGTTAATTTA
112/mm9
(112/hg18)
LCNS112
Rgsc1549
A377T
TTAATGAGCTATAGTTAAATT
112/mm9
(112/hg18)
LCNS124
Rgsc1481
T178C
TGCAAACATATGCGCTAAGCT
124/mm9
(124/hg18)
LCNS152
Rgsc1830
T142C
TGCTCATTACTCTTGAGCTAA
152/mm9
(152/hg18)
LCNS152
Rgsc1827
T357A
TGTTAGAATTTGAAATGTAGG
152/mm9
(152/hg18)
LCNS152
Rgsc1831
T198G
GGGCCACAGATGAGCTCAGTG
152/mm9
(152/hg18)
LCNS161
Rgsc1725
A366G
AATGTGACAGACTGAGAGAAG
161/mm9
(161/hg18)

 

LCNS161
Rgsc1727
T224C
AGGGCAAAACTGAGAAATGTG
161/mm9
(161/hg18)
LCNS161
Rgsc1724
A401G
ACCAACCCCAAGTTTATTTAG
161/mm9
(161/hg18)
LCNS161
Rgsc1731
A180T
TCAATGAAAGATCATCAGCCA
161/mm9
(161/hg18)
LCNS161
Rgsc2035
T193C
ATCAGCCACATTATCAGTGTT
161/mm9
(161/hg18)
LCNS161
Rgsc2036
A300T
CCTGCTGTGAACAATCTGTAA
161/mm9
(161/hg18)
LCNS242
Rgsc1509
T324A
AAAACTAATATGTCACTGTCA
242/mm9
(242/hg18)
LCNS276
Rgsc1240
A342G
GCAATGAATGACAGTGGAAAT
276/mm9
(276/hg18)
LCNS276
Rgsc2033
A148T
CTACAAATCCAATTACAGATT
276/mm9
(276/hg18)
LCNS276
Rgsc2038
A530T
TTGGAGACTCAGAGGCAGGTG
276/mm9
(276/hg18)
LCNS276
Rgsc2031
T545A
CAGGTGATAATGAAACTGATA
276/mm9
(276/hg18)
LCNS348
Rgsc1484
T198G
GTCAACAGACTGTAAAGAATA
348/mm4 *2
(348/hg18)
LCNS348
Rgsc1550
T421A
ATTTAAGTGCTGTGCAAATTA
348/mm4 *2
(348/hg18)
LCNS348
Rgsc1548
C164A
ATCCTTTCCACCATTCCCTTA
348/mm4 *2
(348/hg18)
LCNS354
Rgsc1505
A133T
TGGGTTTCGCAGAGATTTCCC
354mm9
(354/hg18)
LCNS354
Rgsc1507
A437T
GCTGAGAACAAAGTAAATTTA
354mm9
(354/hg18)
LCNS354
Rgsc1508
A505G
TCCCATAAAAAAGCAAAGGAC
354mm9
(354/hg18)
LCNS354
Rgsc1608
T389A
CAACTACGCATAATGTACCGA
354mm9
(354/hg18)
LCNS354
Rgsc1021
A261C
AATAAGATTCAGCTTGACTTC
354mm9
(354/hg18)
LCNS354
Rgsc1728
T346A
CAGTGAACTTTAATGGGATTT
354mm9
(354/hg18)
LCNS354
Rgsc1485
G316A
ATTGTAACCTGTTTTTAAAGC
354mm9
(354/hg18)
LCNS354
Rgsc1828
C362T
GATTTGACAACATCATATTAA
354mm9
(354/hg18)
LCNS403
Rgsc1832
T334C
CTCCTCTCAGTAGCTGACTTT
403/mm9
(403/hg18)
LCNS418
Rgsc1726
A475T
TTATTCCTCCATCAAATATGC
418/mm9
(418/hg18)
LCNS418
Rgsc1729
A238T
TGATGTCCCTATTTGTTAGAG
418/mm9
(418/hg18)
LCNS418
Rgsc2034
A508G
AAGTTAAATTACTTCTGACTG
418/mm9
(418/hg18)
LCNS418

Rgsc2032

T163G
GCTACAACACTGAAGTTACAA
418/mm9
(418/hg18)

*1 Mutation is shown by the base change and the position in the mouse genomic sequence that is available in the Mouse/UCSC column.

*2 LCNS348 is not in the Supplementary Table 1 of the reference because this sequence disappeared in the assembled mouse genome database, mm9. LCNS348 was in the mouse (mm4) database and still is in the human (hg18) database and suffice the criteria defined by the reference.When mutations were screened, the LCNS348 sequence was indeed repeatedly amplified by the PCR primer pair as shown in the reference from many G1 mouse genomic DNA samples. Thus, LCNS348 does exitst in human and many other vertebrate species as shown in 348/hg18, and in the mosue genome (348/mm4) as well confirmed by the PCR amplification.

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