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List of identified structural variations (SVs) and single nucleotide variations (SNVs). | ||
Click the links for details and/or information. | ||
chr | SV | SNV |
chr1 | completed | 432 |
chr2 | completed | 138 |
chr3 | completed | 249 |
chr4 | completed | 244 |
chr5 | completed | 321 |
chr6 | partially completed | 253 |
chr7 | partially completed | 241 |
chr8 | partially completed | 261 |
chr9 | partially completed | 295 |
chr10 | in progress | 351 |
chr11 | in progress | 116 |
chr12 | in progress | 168 |
chr13 | in progress | 154 |
chr14 | in progress | 176 |
chr15 | in progress | 153 |
chr16 | in progress | 270 |
chr17 | completed | 297 |
chr18 | completed | 149 |
chr19 | completed | 94 |
chrX | completed | 233 |
chrY* | n.d. | 6* |
SNV spectrum | ||
SVs and SNV were identified by IGV browzer and samtools, respectively. Approximately 2/3 of SV detection were completed. All the SNV detection were accomplished. No experimental valications have been conducted, yet. The numbers in the SNV column indicate the SNV calls on each chromosome. | ||
*A female genomic DNA sample was used for WGS; therefore, the six SNVs found on chrY were eliminated for further analysis. | ||