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| Column Information for SNV list | ||
| Column# | Column name | Information |
| Column 1 | chr | chromosome in mm10 |
| Column 2 | position | position in mm10 |
| Column 3 | ref | reference base in mm10 |
| Column 4 | alt | altered base in our basecall |
| Column 5 | quality | SNV call by samtools |
| Column 6 | samtools_GT_RAW | pairwise 8 genotype call (0:ref, 1:alt1, 2:alt2, …) |
| Column 7 | min_depth | minimum read depth in the 8 samples |
| Column 8 | 1RF | #ref call in forward of the sample 1 |
| Column 9 | 1RR | #ref call in reverse of the sample 1 |
| Column 10 | 1AF | #alt call in forward of the sample 1 |
| Column 11 | 1AR | #alt call in reverse of the sample 1 |
| Column 12 | 2RF | #ref call in forward of the sample 2 |
| Column 13 | 2RR | #ref call in reverse of the sample 2 |
| Column 14 | 2AF | #alt call in forward of the sample 2 |
| Column 15 | 2AR | #alt call in reverse of the sample 2 |
| Column 16 | 3RF | #ref call in forward of the sample 3 |
| Column 17 | 3RR | #ref call in reverse of the sample 3 |
| Column 18 | 3AF | #alt call in forward of the sample 3 |
| Column 19 | 3AR | #alt call in reverse of the sample 3 |
| Column 20 | 4RF | #ref call in forward of the sample 4 |
| Column 21 | 4RR | #ref call in reverse of the sample 4 |
| Column 22 | 4AF | #alt call in forward of the sample 4 |
| Column 23 | 4AR | #alt call in reverse of the sample 4 |
| Column 24 | 5RF | #ref call in forward of the sample 5 |
| Column 25 | 5RR | #ref call in reverse of the sample 5 |
| Column 26 | 5AF | #alt call in forward of the sample 5 |
| Column 27 | 5AR | #alt call in reverse of the sample 5 |
| Column 28 | 6RF | #ref call in forward of the sample 6 |
| Column 29 | 6RR | #ref call in reverse of the sample 6 |
| Column 30 | 6AF | #alt call in forward of the sample 6 |
| Column 31 | 6AR | #alt call in reverse of the sample 6 |
| Column 32 | 7RF | #ref call in forward of the sample 7 |
| Column 33 | 7RR | #ref call in reverse of the sample 7 |
| Column 34 | 7AF | #alt call in forward of the sample 7 |
| Column 35 | 7AR | #alt call in reverse of the sample 7 |
| Column 36 | 8RF | #ref call in forward of the sample 8 |
| Column 37 | 8RR | #ref call in reverse of the sample 8 |
| Column 38 | 8AF | #alt call in forward of the sample 8 |
| Column 39 | 8AR | #alt call in reverse of the sample 8 |
| Column 40 | merge_repeat | in any of the repeat sequences |
| Column 41 | trfMask | repeat: tandem repeat |
| Column 42 | chromOut | repeat: repeat masker |
| Column 43 | simple | repeat: simple repeat |
| Column 44 | nested | repeat: nested repeat |
| Column 45 | segmentDup | repeat: segmental duplication |
| Genomic DNA from eight independent C57BL/6JJcl females were sequenced. When the same homozygous base substitutions were called in all the eight genomic DNAs, such substitutions were identified as SNVs to the corresponding mm10 reference bases. | ||
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