chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chrX	3182940	C	T	431	11 11 11 11 11 11 11 11	38	0	1	2	43	1	0	4	48	0	1	4	35	0	0	5	48	0	0	5	43	1	2	3	47	1	1	7	40	0	1	6	31	merge_repeat		chromOut			segmentDup
chrX	3410603	C	T	364	11 11 11 11 11 11 11 11	58	0	0	57	5	0	0	49	11	0	0	59	6	0	0	57	7	1	1	68	8	0	0	68	5	0	0	52	6	0	1	65	5	merge_repeat					segmentDup
chrX	4091557	A	G	662	11 11 11 11 11 11 11 11	20	0	0	23	16	0	0	20	12	0	0	28	13	0	0	19	17	1	0	17	15	1	0	24	12	0	1	32	9	0	0	9	11	merge_repeat		chromOut		nested	segmentDup
chrX	4548758	A	G	999	11 11 11 11 11 11 11 11	61	0	0	60	23	1	0	59	24	0	0	44	19	0	1	44	21	0	0	62	27	0	0	55	29	2	0	58	34	0	0	48	13	merge_repeat					segmentDup
chrX	5184119	C	T	999	11 11 11 11 11 11 11 11	28	1	0	27	3	0	0	31	9	0	0	24	4	0	0	27	6	0	0	23	9	0	0	31	10	0	0	27	8	0	0	33	9	merge_repeat					segmentDup
chrX	5188163	G	A	188	11 11 11 11 11 11 11 11	36	0	0	21	21	0	0	26	10	0	0	29	14	0	0	23	17	0	0	21	19	0	0	39	11	0	0	23	15	1	0	22	24	merge_repeat					segmentDup
chrX	6401414	A	C	999	11 11 11 11 11 11 11 11	20	0	0	12	8	0	0	20	14	0	0	21	14	0	0	23	17	0	0	29	11	0	0	13	17	0	0	15	16	0	0	19	8
chrX	6773101	T	C	999	11 11 11 11 11 11 11 11	34	0	0	26	17	0	0	18	34	0	0	18	16	0	0	30	26	0	0	30	28	0	0	16	22	0	0	14	25	0	0	12	25	merge_repeat		chromOut
chrX	6775675	A	T	999	11 11 11 11 11 11 11 11	28	0	0	21	12	0	0	18	23	0	0	17	12	0	0	21	18	0	0	13	17	0	0	9	23	0	0	22	19	0	0	9	19
chrX	6778998	G	C	999	11 11 11 11 11 11 11 11	20	0	0	15	5	0	0	19	9	0	0	18	11	0	0	18	12	0	0	19	19	0	0	16	11	0	0	20	13	0	0	14	12
chrX	6779002	T	A	999	11 11 11 11 11 11 11 11	21	0	0	16	5	0	0	19	9	0	0	19	11	0	0	18	13	0	0	19	20	0	0	16	11	0	0	20	14	0	0	16	13
chrX	6851034	C	G	999	11 11 11 11 11 11 11 11	22	0	0	3	28	0	0	6	16	0	0	10	26	0	0	7	34	0	0	6	32	0	0	9	29	0	0	8	28	0	0	5	27	merge_repeat		chromOut		nested
chrX	6851066	A	C	999	11 11 11 11 11 11 11 11	22	0	0	2	22	1	0	6	15	0	0	7	24	0	0	5	27	0	0	4	24	0	1	5	26	0	0	3	25	0	0	4	19	merge_repeat		chromOut		nested
chrX	7752574	C	A	999	11 11 11 11 11 11 11 11	27	0	0	14	17	0	0	12	15	0	0	20	22	1	0	19	22	0	0	17	19	0	0	20	13	0	1	27	16	0	1	17	14
chrX	8322831	G	A	999	11 11 11 11 11 11 11 11	33	0	0	29	24	0	0	37	16	0	0	35	17	0	0	27	22	0	0	23	22	0	0	13	20	0	0	32	25	0	0	27	23	merge_repeat		chromOut			segmentDup
chrX	11492947	T	G	999	11 11 11 11 11 11 11 11	37	0	0	32	29	0	0	22	25	0	0	39	25	0	0	44	22	0	0	31	16	0	0	28	18	0	0	32	22	0	0	23	14
chrX	11973650	G	A	999	11 11 11 11 11 11 11 11	48	0	0	32	19	0	0	26	22	0	0	30	21	0	0	31	24	0	0	23	26	0	0	33	25	0	0	24	26	0	0	33	23
chrX	13430864	T	G,A	999	12 12 12 12 12 12 12 12	28	0	0	16	12	0	0	21	15	0	0	15	18	0	0	14	20	0	0	18	23	0	0	16	16	0	0	11	19	0	0	12	18	merge_repeat	trfMask	chromOut	simple
chrX	14409568	A	G	999	11 11 11 11 11 11 11 11	44	0	0	42	27	0	0	36	35	0	0	37	25	0	0	25	39	0	0	38	25	0	0	25	19	0	0	32	40	0	0	29	34	merge_repeat		chromOut		nested
chrX	15326139	A	G	999	11 11 11 11 11 11 11 11	37	0	0	21	27	0	0	33	31	0	0	32	21	0	0	33	18	0	0	22	15	0	0	33	18	0	0	27	40	0	0	30	25	merge_repeat		chromOut
chrX	16315066	A	C	999	11 11 11 11 11 11 11 11	28	0	0	21	11	0	0	23	16	0	0	19	10	0	0	21	16	0	0	20	15	0	0	14	15	0	0	19	11	0	0	20	8	merge_repeat	trfMask	chromOut	simple
chrX	16315072	A	C	999	11 11 11 11 11 11 11 11	29	0	0	20	13	0	0	23	17	0	0	18	11	0	0	20	17	0	0	19	14	0	0	13	18	0	0	19	12	0	0	20	10	merge_repeat	trfMask	chromOut	simple
chrX	20306614	T	A	999	11 11 11 11 11 11 11 11	20	0	0	30	8	0	0	22	11	0	0	15	5	0	0	24	11	0	0	31	13	0	0	22	6	0	0	16	8	0	0	22	6	merge_repeat		chromOut
chrX	22156357	T	G	999	11 11 11 11 11 11 11 11	29	0	0	26	8	0	0	21	10	0	0	20	9	0	1	29	15	0	0	15	18	0	0	20	9	0	0	18	22	0	0	16	16	merge_repeat		chromOut	simple	nested
chrX	25572760	T	G	999	11 11 11 11 11 11 11 11	30	0	0	19	25	1	0	20	19	0	0	17	23	0	0	14	20	0	0	14	24	0	0	12	18	0	0	16	19	0	0	17	23	merge_repeat		chromOut			segmentDup
chrX	26360796	T	G	561	11 11 11 11 11 11 11 11	23	0	0	21	11	0	0	16	14	0	0	14	9	0	0	27	7	0	0	22	8	1	0	18	9	0	0	18	9	0	0	19	9	merge_repeat		chromOut		nested	segmentDup
chrX	26770526	A	C	999	11 11 11 11 11 11 11 11	27	0	0	12	20	0	0	21	21	0	0	22	12	0	0	18	24	0	0	24	16	0	0	14	13	0	0	17	15	0	0	22	22	merge_repeat		chromOut		nested	segmentDup
chrX	31268012	T	C	142	11 11 11 11 11 11 11 11	21	0	0	18	12	0	0	20	7	0	0	16	11	0	0	23	6	0	0	16	7	0	0	11	10	0	0	18	6	0	0	14	9	merge_repeat		chromOut		nested	segmentDup
chrX	31703308	A	C	999	11 11 11 11 11 11 11 11	33	0	0	27	13	0	1	27	18	0	0	31	10	0	0	30	18	0	0	26	18	0	0	21	12	0	0	31	13	0	0	27	10	merge_repeat		chromOut			segmentDup
chrX	31776964	G	A	999	11 11 11 11 11 11 11 11	154	0	0	86	83	0	0	76	96	0	0	79	94	0	0	69	85	0	0	75	104	0	0	74	81	0	0	83	89	0	0	77	83	merge_repeat		chromOut
chrX	31776999	G	A	999	11 11 11 11 11 11 11 11	137	0	0	94	83	0	0	74	90	0	0	80	96	0	0	64	73	0	0	76	92	0	0	70	84	0	0	86	87	0	0	78	76	merge_repeat		chromOut
chrX	31777131	G	A	999	11 11 11 11 11 11 11 11	186	1	0	97	101	0	0	126	86	0	0	110	108	0	0	107	88	1	0	100	86	0	0	93	95	0	0	112	111	0	0	90	96	merge_repeat		chromOut
chrX	31777267	C	A	999	11 11 11 11 11 11 11 11	186	0	0	103	114	0	0	109	94	0	0	102	91	0	0	102	84	0	0	129	81	0	0	112	80	0	0	113	91	0	0	112	99	merge_repeat		chromOut
chrX	31777292	G	T	999	11 11 11 11 11 11 11 11	174	0	0	103	103	0	0	108	83	0	0	105	77	0	0	94	80	0	0	129	84	0	0	114	73	0	0	113	90	0	0	115	87	merge_repeat		chromOut
chrX	31777326	A	C	999	11 11 11 11 11 11 11 11	182	0	0	105	98	0	0	107	94	0	0	102	80	0	0	115	94	0	0	130	81	0	0	114	77	1	0	106	103	0	0	106	80	merge_repeat		chromOut
chrX	31778588	C	A	999	11 11 11 11 11 11 11 11	31	0	0	17	28	0	0	10	26	0	0	16	22	0	0	13	18	0	0	18	21	0	0	12	27	0	0	14	30	0	0	19	24	merge_repeat		chromOut
chrX	31778592	C	A	999	11 11 11 11 11 11 11 11	34	0	0	20	29	0	0	11	26	0	0	19	24	0	0	16	18	0	0	20	21	0	0	13	28	0	0	15	31	0	0	21	24	merge_repeat		chromOut
chrX	31778596	C	A	999	11 11 11 11 11 11 11 11	39	0	0	20	29	0	0	11	28	0	0	20	28	0	0	21	20	0	0	21	21	0	0	14	29	0	0	16	33	0	0	23	26	merge_repeat		chromOut
chrX	31778600	C	A	999	11 11 11 11 11 11 11 11	44	0	0	22	32	0	0	16	30	0	0	22	30	0	0	21	23	0	0	25	21	0	0	16	31	0	0	20	35	0	0	23	28	merge_repeat		chromOut
chrX	31778605	T	A	999	11 11 11 11 11 11 11 11	115	0	0	43	85	0	0	45	82	0	0	57	76	0	0	54	87	0	0	46	69	0	0	43	84	0	0	50	80	0	0	52	71	merge_repeat		chromOut
chrX	31778622	A	G	999	11 11 11 11 11 11 11 11	124	0	0	50	98	0	0	50	90	0	0	72	79	0	0	69	97	0	0	45	79	0	0	46	96	0	0	54	88	0	0	54	78	merge_repeat		chromOut
chrX	31778648	T	C	999	11 11 11 11 11 11 11 11	128	0	0	57	96	0	0	66	91	0	0	77	67	0	0	77	95	0	0	49	79	0	0	53	85	0	0	66	85	0	0	62	83	merge_repeat		chromOut
chrX	31922712	G	A	42.4036	11 11 11 11 11 11 11 11	32	0	0	36	4	0	0	36	7	0	0	32	3	0	0	31	1	0	0	30	7	0	1	29	4	0	0	35	9	1	0	29	10	merge_repeat		chromOut			segmentDup
chrX	31922759	C	T	64	11 11 11 11 11 11 11 11	23	0	0	23	2	0	0	24	6	0	0	23	3	0	0	27	1	0	0	23	5	0	0	20	3	0	0	30	5	0	0	16	7	merge_repeat		chromOut			segmentDup
chrX	33019288	T	A	203	11 11 11 11 11 11 11 11	24	0	0	18	24	0	0	22	13	0	0	13	14	0	0	14	15	0	0	13	18	0	0	13	11	0	1	22	14	0	1	20	12	merge_repeat		chromOut		nested	segmentDup
chrX	33190013	C	T	87	11 11 11 11 11 11 11 11	20	0	0	15	5	0	0	22	7	0	0	21	7	0	0	19	9	0	1	23	8	0	0	23	5	0	0	17	3	0	0	25	6	merge_repeat		chromOut
chrX	33433456	A	G	999	11 11 11 11 11 11 11 11	22	0	0	15	12	0	0	15	21	0	0	8	14	0	0	21	21	0	0	21	20	0	0	6	16	0	0	20	11	0	0	18	16	merge_repeat		chromOut		nested	segmentDup
chrX	33918634	C	T	187	11 11 11 11 11 11 11 11	51	1	0	23	29	0	1	29	30	0	1	28	27	0	0	29	31	0	0	30	30	0	0	28	27	0	0	33	18	0	1	29	25	merge_repeat					segmentDup
chrX	33933327	A	G	175	11 11 11 11 11 11 11 11	63	1	3	44	32	1	1	39	43	0	2	41	34	0	0	46	38	0	1	33	29	1	0	28	34	0	1	40	32	1	1	40	38	merge_repeat		chromOut		nested	segmentDup
chrX	33933443	T	A	119	11 11 11 11 11 11 11 11	86	0	1	71	39	0	0	57	45	0	0	67	38	0	0	62	36	0	0	85	49	0	0	63	30	0	2	64	39	1	0	56	29	merge_repeat		chromOut		nested	segmentDup
chrX	33936816	G	A	999	11 11 11 11 11 11 11 11	57	0	0	44	44	0	0	42	29	0	0	46	24	0	0	35	25	1	0	44	28	0	1	31	25	0	0	35	37	0	0	57	33	merge_repeat		chromOut			segmentDup
chrX	33938157	T	G	457	11 11 11 11 11 11 11 11	35	0	0	13	22	0	0	22	26	1	0	20	26	0	0	19	23	0	0	15	28	0	0	18	26	0	1	20	26	0	0	21	26	merge_repeat		chromOut			segmentDup
chrX	34291962	C	T	53	11 11 11 11 11 11 11 11	45	0	0	38	13	2	1	39	13	0	1	34	10	0	1	50	11	1	0	43	15	0	0	35	16	0	0	31	17	0	1	32	12	merge_repeat		chromOut			segmentDup
chrX	34464043	T	C	224	11 11 11 11 11 11 11 11	36	1	1	34	14	1	1	34	19	0	1	21	19	1	0	32	15	0	0	41	21	0	0	18	18	1	0	29	19	1	0	26	16	merge_repeat		chromOut		nested	segmentDup
chrX	34468160	A	G	185	11 11 11 11 11 11 11 11	23	0	1	15	20	0	1	19	12	1	0	12	10	0	0	16	14	0	0	17	9	0	0	21	9	0	0	13	18	1	1	10	11	merge_repeat		chromOut		nested
chrX	34469411	A	T	276	11 11 11 11 11 11 11 11	88	0	0	47	66	0	0	54	64	0	0	45	69	0	0	49	73	0	0	39	70	0	0	39	49	0	0	62	55	0	0	41	65	merge_repeat		chromOut
chrX	34469527	T	C	278	11 11 11 11 11 11 11 11	68	0	0	27	52	1	1	27	46	0	1	32	41	0	1	24	50	0	2	31	36	1	1	31	43	0	1	28	41	0	0	24	44	merge_repeat		chromOut
chrX	34484230	G	A	117	11 11 11 11 11 11 11 11	58	0	0	36	29	0	0	51	24	1	1	38	22	0	2	40	18	0	0	32	26	0	0	28	33	0	0	37	31	0	0	36	28	merge_repeat					segmentDup
chrX	37805131	A	G	999	11 11 11 11 11 11 11 11	39	0	0	20	19	0	0	27	27	0	0	20	25	0	0	28	21	0	0	24	22	0	0	22	21	0	0	24	26	0	0	22	25
chrX	40723497	C	A	999	11 11 11 11 11 11 11 11	45	0	0	37	30	0	0	23	22	0	0	33	24	0	0	29	40	0	0	33	35	0	0	18	37	0	0	25	29	0	0	29	38
chrX	43382591	T	C	999	11 11 11 11 11 11 11 11	65	0	0	37	33	0	0	38	41	0	0	33	32	0	0	44	33	0	0	48	25	0	0	40	29	0	0	35	32	0	0	44	26	merge_repeat	trfMask	chromOut	simple
chrX	44109772	C	A	999	11 11 11 11 11 11 11 11	35	0	0	10	30	0	0	18	31	0	0	14	34	0	0	10	35	0	0	12	29	0	0	15	31	0	0	14	27	0	0	9	26	merge_repeat		chromOut
chrX	44109777	C	A	999	11 11 11 11 11 11 11 11	36	0	0	9	31	0	0	16	30	0	0	11	35	0	0	11	32	0	0	11	27	0	0	12	34	0	0	12	28	1	0	7	28	merge_repeat		chromOut
chrX	46087121	T	A	999	11 11 11 11 11 11 11 11	37	0	0	21	18	0	0	20	30	0	0	22	32	0	0	26	25	0	0	18	27	0	0	20	17	0	0	14	30	0	0	12	27	merge_repeat		chromOut	simple
chrX	46907009	T	G	999	11 11 11 11 11 11 11 11	28	0	0	23	18	0	0	15	15	0	0	21	18	0	0	26	25	0	0	29	21	0	0	19	13	0	0	20	9	0	0	18	10	merge_repeat		chromOut	simple	nested
chrX	49558518	A	G	999	11 11 11 11 11 11 11 11	43	0	0	12	41	0	0	23	47	0	0	22	33	0	0	17	26	0	0	17	33	0	0	21	23	0	0	13	33	0	0	10	37	merge_repeat		chromOut		nested
chrX	49714569	A	C	999	11 11 11 11 11 11 11 11	35	0	0	27	28	0	0	24	22	1	0	24	30	0	0	28	21	0	0	17	31	0	0	26	20	0	0	24	32	0	0	18	17	merge_repeat		chromOut		nested
chrX	53951438	T	C	999	11 11 11 11 11 11 11 11	50	0	0	28	30	0	0	27	23	0	0	29	33	0	0	34	27	0	0	28	27	0	0	28	24	0	0	27	37	0	0	29	28	merge_repeat		chromOut			segmentDup
chrX	54280585	T	G	211	11 11 11 11 11 11 11 11	22	1	0	14	12	0	0	14	9	0	0	23	16	0	0	17	18	0	0	12	19	0	0	14	14	0	1	12	13	0	0	12	10	merge_repeat		chromOut		nested	segmentDup
chrX	54935991	T	G	260	11 11 11 11 11 11 11 11	24	0	0	9	15	1	0	13	16	0	0	17	17	0	0	13	27	0	0	16	11	0	0	11	16	0	0	11	14	0	0	13	17	merge_repeat		chromOut		nested	segmentDup
chrX	56467163	C	A	999	11 11 11 11 11 11 11 11	38	0	0	20	18	0	0	23	21	0	0	33	27	0	0	28	19	0	0	33	27	0	0	27	33	0	0	30	29	0	0	26	22	merge_repeat			simple
chrX	59341206	A	G	999	11 11 11 11 11 11 11 11	48	0	0	33	28	0	0	29	19	0	0	25	32	0	0	36	27	0	0	39	29	0	0	34	26	0	0	32	29	0	0	35	23	merge_repeat		chromOut		nested
chrX	60364805	C	A	999	11 11 11 11 11 11 11 11	47	0	0	26	24	0	0	23	32	0	0	30	22	0	0	33	14	0	0	31	24	0	0	24	29	0	0	31	22	0	0	36	20
chrX	60381068	G	A	999	11 11 11 11 11 11 11 11	34	0	0	24	36	1	0	33	25	0	0	24	23	0	0	26	39	0	0	38	25	0	0	33	22	1	0	30	29	0	0	22	12	merge_repeat		chromOut
chrX	60398378	C	A	999	11 11 11 11 11 11 11 11	31	0	0	21	21	0	0	27	33	0	0	22	28	0	0	20	24	0	0	31	25	0	0	21	17	0	0	16	15	0	0	27	20	merge_repeat		chromOut
chrX	60442203	G	A	999	11 11 11 11 11 11 11 11	46	0	0	21	39	0	0	13	33	0	0	17	34	0	0	25	30	0	0	20	34	0	0	22	30	0	0	21	31	0	0	31	26	merge_repeat		chromOut
chrX	60472901	T	A	999	11 11 11 11 11 11 11 11	24	0	0	10	19	0	0	19	15	0	0	20	15	0	0	26	14	0	0	19	22	0	0	28	14	0	0	10	14	0	0	15	18	merge_repeat		chromOut	simple
chrX	60492405	G	A	999	11 11 11 11 11 11 11 11	35	0	0	34	21	0	0	27	22	1	0	33	20	0	0	17	18	0	0	25	22	0	0	35	17	0	0	35	19	0	0	31	23	merge_repeat		chromOut
chrX	60492467	G	A	999	11 11 11 11 11 11 11 11	37	0	0	22	27	0	0	30	21	0	0	25	17	0	0	14	23	0	0	24	31	0	0	22	26	0	0	34	28	0	0	27	24	merge_repeat		chromOut
chrX	60492696	G	T	999	11 11 11 11 11 11 11 11	31	0	0	16	18	0	0	14	17	0	0	15	20	0	0	18	14	0	0	16	16	0	0	13	27	0	0	25	24	0	0	18	19
chrX	60492704	C	T	999	11 11 11 11 11 11 11 11	33	0	0	17	20	0	0	16	21	0	0	17	21	0	0	18	16	0	0	16	17	0	0	16	28	0	0	29	26	0	0	18	22
chrX	60492717	G	T	999	11 11 11 11 11 11 11 11	35	0	0	20	26	0	0	17	24	1	0	21	23	0	0	18	20	0	0	16	19	0	0	18	31	0	0	32	32	0	0	21	23
chrX	60492799	C	A	999	11 11 11 11 11 11 11 11	49	0	0	31	22	0	0	32	28	0	0	31	29	0	0	37	17	0	0	28	21	0	0	31	29	1	0	48	30	0	0	25	29	merge_repeat		chromOut
chrX	60497019	C	A	999	11 11 11 11 11 11 11 11	37	0	0	13	32	0	0	22	24	0	0	15	22	0	0	15	30	0	0	16	27	0	0	15	33	0	1	19	28	0	0	9	29
chrX	60497024	G	T	999	11 11 11 11 11 11 11 11	37	0	0	14	33	0	0	22	24	0	0	15	22	0	0	15	30	0	0	16	27	0	0	15	33	0	0	19	29	0	0	9	29
chrX	60497091	G	A	999	11 11 11 11 11 11 11 11	34	0	0	10	31	0	0	7	30	0	0	5	29	0	0	4	41	0	0	5	34	0	0	6	33	0	0	5	31	0	0	5	30
chrX	60497115	G	A	999	11 11 11 11 11 11 11 11	30	0	0	7	27	0	0	9	21	0	0	2	32	0	0	2	42	0	0	2	34	0	0	1	33	0	0	1	30	0	0	4	27
chrX	60497125	C	T	999	11 11 11 11 11 11 11 11	24	0	0	9	25	0	0	7	24	0	0	2	29	0	0	2	34	0	0	2	30	0	0	1	29	0	0	2	28	0	0	2	22
chrX	60497140	G	A	999	11 11 11 11 11 11 11 11	24	0	0	8	27	0	0	9	29	0	0	3	30	0	0	3	33	0	0	6	32	0	0	1	25	0	0	4	29	0	0	4	20
chrX	60497143	G	A	999	11 11 11 11 11 11 11 11	24	0	0	8	27	0	0	9	29	0	0	3	30	0	0	3	33	0	0	6	32	0	0	1	25	0	0	4	29	0	0	4	20
chrX	60497167	G	A	999	11 11 11 11 11 11 11 11	22	0	0	10	23	0	0	14	31	0	0	8	23	0	0	9	34	0	0	10	37	0	0	2	20	0	0	9	31	0	0	7	22
chrX	60497200	G	A	999	11 11 11 11 11 11 11 11	29	0	0	14	21	0	0	21	35	0	0	19	25	0	0	15	28	0	0	18	33	0	0	11	18	0	0	20	30	0	0	13	20
chrX	60497214	G	A	999	11 11 11 11 11 11 11 11	34	1	0	17	20	0	0	26	34	0	0	24	26	0	0	20	24	0	0	19	35	0	0	16	18	0	0	24	28	0	0	21	19
chrX	60497235	G	A	999	11 11 11 11 11 11 11 11	39	0	0	23	16	0	0	32	35	0	0	30	27	0	0	27	17	0	0	23	29	0	0	22	18	0	0	30	31	0	0	25	17
chrX	60497252	T	G	999	11 11 11 11 11 11 11 11	44	0	0	24	20	0	0	32	36	0	0	33	24	0	0	28	18	0	0	29	25	0	0	26	18	0	0	36	27	0	0	28	17
chrX	60497272	T	C	999	11 11 11 11 11 11 11 11	39	0	0	22	17	0	0	40	28	0	0	33	21	0	0	32	16	0	0	31	21	0	0	25	15	0	0	37	22	0	0	31	17
chrX	60497294	G	C	999	11 11 11 11 11 11 11 11	38	0	0	24	14	0	0	39	28	0	0	44	18	0	0	32	13	0	0	29	16	0	0	31	15	0	0	36	20	0	0	27	11
chrX	60497301	T	C	999	11 11 11 11 11 11 11 11	37	0	0	23	14	0	0	38	28	0	0	46	15	0	0	30	12	0	0	29	15	0	0	32	15	0	0	35	20	0	0	29	10
chrX	60497310	G	A	999	11 11 11 11 11 11 11 11	36	0	0	22	14	0	0	39	25	0	0	46	15	0	0	28	11	0	0	30	12	0	0	33	13	0	0	38	18	0	0	31	8
chrX	60497317	G	A	999	11 11 11 11 11 11 11 11	36	0	0	21	15	0	0	39	21	0	0	43	14	0	0	28	10	0	0	30	11	0	0	35	12	0	0	38	16	0	0	31	8
chrX	60497321	T	A	999	11 11 11 11 11 11 11 11	36	0	0	21	15	0	0	38	21	0	0	43	14	0	0	28	10	0	0	30	11	0	0	35	12	0	0	38	16	0	0	31	8
chrX	60497354	T	C	999	11 11 11 11 11 11 11 11	36	0	0	27	10	0	0	40	12	0	0	38	7	0	0	35	6	0	0	33	6	0	0	32	6	0	0	31	9	0	0	29	7
chrX	60497362	T	C	999	11 11 11 11 11 11 11 11	32	0	0	26	7	0	0	39	8	0	0	36	4	0	0	32	6	0	0	35	6	0	0	28	4	0	0	31	6	0	0	28	6
chrX	60497382	G	C	999	11 11 11 11 11 11 11 11	27	0	0	28	5	0	0	37	6	0	0	34	1	0	0	32	4	0	0	33	1	0	0	33	1	0	0	25	2	0	0	33	3
chrX	60497418	G	C	999	11 11 11 11 11 11 11 11	23	0	0	25	3	0	0	24	5	0	0	35	2	0	0	36	5	0	0	33	4	0	0	35	1	0	0	21	2	0	0	31	2
chrX	60497423	A	C	999	11 11 11 11 11 11 11 11	25	0	0	25	4	0	0	23	4	0	0	31	2	0	0	35	6	0	0	32	6	0	0	34	3	0	0	21	4	0	0	31	2
chrX	60497429	T	C	999	11 11 11 11 11 11 11 11	27	0	0	24	4	0	0	26	4	0	0	27	3	0	0	36	6	0	0	33	9	0	0	31	3	0	0	23	4	0	0	33	2
chrX	60497442	A	C	999	11 11 11 11 11 11 11 11	31	0	0	26	5	0	0	24	8	0	0	23	9	0	0	34	8	0	0	35	12	0	0	27	4	0	0	26	7	0	0	31	8
chrX	60497460	T	C	999	11 11 11 11 11 11 11 11	36	0	0	26	10	0	0	22	16	0	0	25	12	0	0	34	17	0	0	33	16	0	0	27	10	0	0	27	10	0	0	31	11
chrX	60497481	T	C	999	11 11 11 11 11 11 11 11	31	0	0	17	18	0	0	15	16	0	0	27	19	0	0	24	21	0	0	29	20	0	0	26	12	0	0	26	17	0	0	24	15
chrX	60502044	A	C	999	11 11 11 11 11 11 11 11	47	0	0	15	38	0	0	21	29	0	0	17	42	0	0	29	28	0	0	22	26	0	0	19	28	0	0	36	30	0	0	11	38	merge_repeat		chromOut		nested
chrX	60502061	C	T	999	11 11 11 11 11 11 11 11	38	0	0	11	36	0	0	18	25	0	0	14	36	0	0	20	26	0	0	17	25	0	0	12	26	0	0	22	29	0	0	9	35	merge_repeat		chromOut		nested
chrX	60502063	A	T	999	11 11 11 11 11 11 11 11	38	0	0	12	37	0	0	17	25	0	0	15	36	0	0	20	26	0	0	17	25	0	0	12	26	0	0	23	28	0	0	9	35	merge_repeat		chromOut		nested
chrX	60502074	C	T	999	11 11 11 11 11 11 11 11	37	0	0	16	36	0	0	18	28	0	0	16	40	0	0	20	25	0	0	17	24	0	0	13	24	0	0	21	29	0	0	11	34	merge_repeat		chromOut		nested
chrX	60508960	A	C	999	11 11 11 11 11 11 11 11	26	0	0	8	35	0	0	5	29	0	0	2	28	0	0	2	26	0	0	3	23	0	0	2	31	0	0	2	35	0	0	3	23
chrX	60509158	G	C	999	11 11 11 11 11 11 11 11	23	0	0	27	6	0	0	26	6	0	0	26	5	0	0	25	1	0	0	27	3	0	0	23	2	0	0	21	2	0	0	27	3
chrX	60509160	C	T	999	11 11 11 11 11 11 11 11	23	0	0	27	6	0	0	26	6	0	0	26	5	0	0	25	1	0	0	27	3	0	0	23	2	0	0	21	2	0	0	27	3
chrX	60509167	A	G	999	11 11 11 11 11 11 11 11	24	0	0	27	7	0	0	27	7	0	0	29	6	0	0	29	1	0	0	27	4	0	0	28	3	0	0	21	3	0	0	30	3
chrX	60526334	C	A	999	11 11 11 11 11 11 11 11	28	0	0	29	13	0	0	18	10	0	0	30	12	0	0	28	10	0	0	35	9	0	0	22	12	0	0	18	12	0	0	22	11
chrX	60526336	T	A	999	11 11 11 11 11 11 11 11	28	0	0	29	16	0	0	18	10	0	0	30	12	0	0	29	11	0	0	35	11	0	0	22	14	0	0	18	12	0	0	22	12	merge_repeat			simple
chrX	60526362	C	A	999	11 11 11 11 11 11 11 11	29	0	0	27	19	0	0	19	10	0	0	30	12	0	0	29	11	0	0	35	14	0	0	21	21	0	0	20	14	0	0	21	13	merge_repeat	trfMask	chromOut	simple
chrX	60526589	C	T	999	11 11 11 11 11 11 11 11	51	0	0	35	41	0	0	24	30	0	0	36	36	0	0	28	38	0	0	35	42	0	0	25	35	0	0	35	31	0	0	35	16	merge_repeat		chromOut
chrX	61822489	T	C	999	11 11 11 11 11 11 11 11	54	0	0	21	36	0	0	30	36	0	0	35	30	0	0	34	32	0	0	47	31	0	0	32	22	0	0	37	35	0	0	34	35
chrX	63777211	T	G	999	11 11 11 11 11 11 11 11	25	0	0	21	15	0	0	17	15	0	0	15	14	0	0	15	17	0	0	22	9	1	0	27	21	0	0	15	10	0	0	17	24	merge_repeat		chromOut		nested
chrX	64051990	G	T	999	11 11 11 11 11 11 11 11	21	0	0	7	25	0	0	5	16	0	0	4	29	0	0	11	25	0	0	8	28	0	0	2	23	0	0	5	16	0	0	8	13	merge_repeat		chromOut		nested
chrX	65814231	T	C	999	11 11 11 11 11 11 11 11	46	0	0	26	32	0	0	35	18	0	0	27	25	0	0	24	25	0	0	35	31	0	0	23	24	0	0	28	26	0	0	20	26	merge_repeat		chromOut		nested
chrX	67286791	G	T	999	11 11 11 11 11 11 11 11	47	0	0	38	33	1	0	18	32	0	0	24	33	0	0	33	31	1	0	19	29	0	0	21	26	1	1	32	29	1	0	28	30
chrX	67609331	A	G	999	11 11 11 11 11 11 11 11	58	0	0	27	31	0	0	35	35	0	0	19	45	0	0	30	31	0	0	40	41	0	0	49	33	0	0	37	36	0	0	38	34	merge_repeat		chromOut		nested
chrX	69236621	A	G	999	11 11 11 11 11 11 11 11	28	0	0	19	11	0	0	17	13	0	0	26	15	0	0	24	17	0	0	24	25	0	0	16	12	0	0	18	17	0	0	25	20	merge_repeat		chromOut
chrX	70357478	T	G	999	11 11 11 11 11 11 11 11	36	0	0	24	12	0	0	24	19	0	0	21	15	0	0	24	21	0	0	24	30	0	0	27	22	0	0	17	28	0	0	12	24	merge_repeat		chromOut
chrX	74591981	A	C	999	11 11 11 11 11 11 11 11	37	0	0	27	30	0	0	31	37	0	0	35	18	0	0	25	27	0	0	31	28	0	0	24	25	0	0	23	26	0	0	25	12	merge_repeat		chromOut
chrX	74862610	A	G	999	11 11 11 11 11 11 11 11	25	0	0	21	15	0	0	16	19	0	0	20	6	0	0	19	12	0	0	15	10	0	0	26	8	0	0	22	14	0	0	21	7	merge_repeat		chromOut		nested	segmentDup
chrX	75900789	T	G	999	11 11 11 11 11 11 11 11	39	0	0	20	33	0	0	22	27	0	0	20	19	0	0	16	37	0	0	27	36	0	0	22	33	0	0	24	24	0	0	17	30	merge_repeat		chromOut
chrX	75949971	T	G	999	11 11 11 11 11 11 11 11	33	0	0	20	13	0	0	26	9	0	0	29	7	0	0	26	14	0	0	15	23	0	0	26	11	0	0	14	20	0	0	27	10	merge_repeat		chromOut	simple		segmentDup
chrX	76234508	G	C	999	11 11 11 11 11 11 11 11	47	0	0	24	37	0	0	30	43	0	0	28	30	0	0	31	27	0	0	37	21	0	0	25	26	0	0	40	31	0	0	27	20
chrX	78399995	A	C	999	11 11 11 11 11 11 11 11	23	0	0	11	12	0	0	17	13	0	0	14	14	0	0	15	18	0	0	13	18	0	0	17	16	0	0	15	16	0	0	17	10	merge_repeat		chromOut	simple
chrX	79958233	G	T	999	11 11 11 11 11 11 11 11	25	0	0	16	18	0	0	12	13	0	0	14	16	0	0	17	21	0	0	16	21	0	0	15	12	0	0	11	21	0	0	7	19	merge_repeat		chromOut		nested
chrX	80670675	A	G	999	11 11 11 11 11 11 11 11	38	0	0	21	19	0	0	20	24	0	0	22	19	0	0	26	19	1	0	18	19	0	0	29	28	0	1	23	25	0	0	16	28	merge_repeat	trfMask	chromOut	simple	nested
chrX	83370663	T	G	999	11 11 11 11 11 11 11 11	54	1	0	33	29	0	0	44	22	0	0	34	21	0	0	37	17	0	0	36	18	0	0	44	15	0	0	47	26	0	1	41	26	merge_repeat	trfMask	chromOut	simple
chrX	88477767	T	C	999	11 11 11 11 11 11 11 11	46	0	0	21	27	0	0	30	27	0	0	21	42	0	0	36	27	0	0	36	31	0	0	31	23	0	0	34	22	0	0	21	25	merge_repeat		chromOut
chrX	88919093	T	A	999	11 11 11 11 11 11 11 11	33	0	0	21	21	0	0	25	21	0	0	29	14	0	0	28	20	0	0	20	13	0	0	30	15	0	0	28	28	0	0	24	18
chrX	89504181	A	T	999	11 11 11 11 11 11 11 11	44	0	0	11	38	0	0	7	39	0	0	9	35	0	0	15	40	0	0	21	46	0	0	16	28	0	0	13	38	0	0	13	31
chrX	89504183	T	C	999	11 11 11 11 11 11 11 11	44	0	0	11	38	0	0	7	39	0	0	9	35	0	0	15	40	0	0	21	46	0	0	16	28	0	0	12	38	0	0	13	31
chrX	91318845	G	T	999	11 11 11 11 11 11 11 11	37	0	0	17	22	0	0	21	27	0	0	26	21	1	0	38	20	1	1	25	19	0	0	13	24	0	0	18	25	2	1	17	24	merge_repeat			simple		segmentDup
chrX	93168821	G	T	999	11 11 11 11 11 11 11 11	54	0	0	32	27	0	0	24	30	0	0	31	33	0	0	34	35	0	0	30	33	0	0	36	26	0	0	33	35	0	0	45	36	merge_repeat		chromOut		nested
chrX	93699907	G	A	999	11 11 11 11 11 11 11 11	39	0	0	20	24	0	0	16	23	0	0	20	29	0	2	17	37	0	0	20	24	0	0	20	26	0	0	15	27	0	0	14	30
chrX	94073920	C	A	999	11 11 11 11 11 11 11 11	20	0	1	19	9	0	1	10	13	0	0	19	13	0	0	9	11	0	0	12	16	0	0	17	11	0	0	24	17	0	0	19	7	merge_repeat		chromOut
chrX	94879447	T	G	418	11 11 11 11 11 11 11 11	172	5	0	77	142	2	1	91	145	4	3	56	156	6	1	64	157	3	0	61	156	2	1	38	131	2	2	56	150	5	1	59	145	merge_repeat					segmentDup
chrX	94883538	T	G	782	11 11 11 11 11 11 11 11	203	1	1	96	170	2	3	101	126	0	3	100	167	1	2	128	181	0	2	132	151	0	0	111	120	2	1	91	145	2	0	77	124	merge_repeat					segmentDup
chrX	94904102	A	T	999	11 11 11 11 11 11 11 11	21	0	0	19	28	0	0	17	27	0	0	8	13	0	0	21	12	0	0	14	9	0	0	14	11	0	0	18	18	0	0	13	15	merge_repeat					segmentDup
chrX	94904105	C	G	999	11 11 11 11 11 11 11 11	23	0	0	18	28	0	2	16	27	1	1	8	13	0	0	21	12	0	0	14	9	1	1	14	10	1	1	19	18	0	0	13	15	merge_repeat					segmentDup
chrX	95843312	A	G	999	11 11 11 11 11 11 11 11	56	0	0	30	36	0	0	26	33	0	0	35	22	1	0	32	31	0	0	31	35	0	0	35	21	0	0	39	33	0	0	37	41	merge_repeat		chromOut
chrX	96960458	T	C	999	11 11 11 11 11 11 11 11	58	0	0	31	43	0	0	41	31	0	0	36	30	1	0	32	29	0	0	39	32	0	0	22	36	0	0	43	35	0	0	35	46	merge_repeat		chromOut		nested
chrX	97064567	C	A	999	11 11 11 11 11 11 11 11	56	0	0	33	27	0	0	26	39	1	0	34	42	0	0	28	31	0	0	24	32	0	0	30	29	0	0	27	29	1	0	39	39	merge_repeat		chromOut		nested
chrX	99558145	T	G	999	11 11 11 11 11 11 11 11	43	0	0	27	24	1	0	21	21	0	0	32	21	0	0	33	28	0	0	29	23	0	0	31	29	0	0	30	29	0	0	25	30	merge_repeat	trfMask	chromOut	simple
chrX	99642089	G	T	999	11 11 11 11 11 11 11 11	20	0	0	6	28	0	0	5	25	0	0	5	22	0	0	11	19	0	0	3	17	0	0	4	28	0	0	8	18	0	0	4	22
chrX	100358973	T	C	999	11 11 11 11 11 11 11 11	41	0	0	37	33	0	0	36	35	0	0	38	22	0	0	39	34	0	0	31	26	0	0	21	20	0	0	30	32	0	0	33	33
chrX	101222876	C	A	999	11 11 11 11 11 11 11 11	48	0	0	32	16	0	0	40	23	0	0	51	23	0	0	41	32	0	0	32	38	0	0	26	24	0	0	30	27	0	0	29	35
chrX	104707496	A	G	999	11 11 11 11 11 11 11 11	53	0	0	27	29	0	0	33	30	0	0	35	30	0	0	43	36	0	0	29	24	0	0	36	27	0	0	28	37	0	0	27	28	merge_repeat		chromOut		nested
chrX	109035748	A	T	999	11 11 11 11 11 11 11 11	38	0	0	28	22	0	0	18	22	0	0	36	17	0	0	31	17	0	0	28	22	0	0	24	14	0	0	30	18	0	0	27	19	merge_repeat		chromOut
chrX	109744015	A	G	999	11 11 11 11 11 11 11 11	37	0	0	17	31	0	0	15	33	0	0	18	31	0	0	30	38	0	0	21	37	0	0	24	30	0	0	14	23	0	0	22	18	merge_repeat		chromOut		nested
chrX	110824628	T	G	999	11 11 11 11 11 11 11 11	30	0	0	18	12	0	0	40	21	0	0	18	16	0	0	28	25	0	0	22	25	0	0	27	18	0	0	24	19	0	0	14	16	merge_repeat	trfMask	chromOut	simple
chrX	111133006	G	T	999	11 11 11 11 11 11 11 11	39	0	0	14	25	0	0	20	22	0	0	24	25	0	0	24	36	0	0	19	38	0	0	14	26	0	0	18	33	0	0	16	28	merge_repeat		chromOut
chrX	111144215	G	A	999	11 11 11 11 11 11 11 11	43	0	0	34	22	0	0	37	23	0	0	28	20	0	0	25	27	0	0	31	12	0	0	33	22	0	0	26	19	0	0	31	22	merge_repeat		chromOut		nested
chrX	111144219	T	C	999	11 11 11 11 11 11 11 11	44	0	0	33	23	0	0	36	23	0	0	26	19	0	0	27	25	0	0	32	13	0	0	34	22	0	0	25	19	0	0	30	22	merge_repeat		chromOut		nested
chrX	111144322	C	G	999	11 11 11 11 11 11 11 11	28	0	0	19	25	0	0	22	23	0	0	22	27	0	0	22	24	0	0	19	18	0	0	8	20	0	0	18	13	0	0	14	16	merge_repeat		chromOut		nested
chrX	111144323	G	A	999	11 11 11 11 11 11 11 11	28	0	0	19	25	0	0	21	23	0	0	22	27	0	0	22	24	0	0	19	18	0	0	8	20	0	0	17	13	0	0	14	16	merge_repeat		chromOut		nested
chrX	111152544	T	C	999	11 11 11 11 11 11 11 11	32	0	0	30	26	0	0	20	29	0	0	14	21	0	0	16	20	0	0	27	25	0	0	22	13	0	0	23	20	0	0	15	17	merge_repeat		chromOut		nested
chrX	111152562	T	C	999	11 11 11 11 11 11 11 11	33	0	0	30	23	0	0	19	25	0	0	19	19	0	0	15	19	0	0	28	21	0	0	22	13	0	0	23	18	0	0	16	17	merge_repeat		chromOut		nested
chrX	111152571	A	C	999	11 11 11 11 11 11 11 11	32	0	0	26	20	0	0	21	26	0	0	20	16	0	0	17	19	0	0	29	23	0	0	22	10	0	0	22	18	0	0	19	16	merge_repeat		chromOut		nested
chrX	111152691	T	C	999	11 11 11 11 11 11 11 11	38	0	0	16	23	0	0	21	24	0	0	27	18	0	0	19	19	0	0	18	25	0	0	26	23	0	0	34	20	0	0	32	20	merge_repeat		chromOut		nested
chrX	111155471	A	C	999	11 11 11 11 11 11 11 11	26	0	0	16	16	0	0	17	20	0	0	13	13	0	0	15	22	0	0	18	24	0	0	22	16	0	0	11	28	0	0	9	22	merge_repeat		chromOut		nested
chrX	111158944	A	T	999	11 11 11 11 11 11 11 11	25	0	0	18	18	0	0	22	17	0	0	14	20	0	0	20	19	0	0	9	16	0	0	18	20	0	0	15	11	0	0	14	13	merge_repeat		chromOut
chrX	111158948	C	A	999	11 11 11 11 11 11 11 11	25	0	0	18	16	0	0	21	17	0	0	14	20	0	0	17	21	0	0	9	17	0	0	18	20	0	0	14	11	0	0	14	13	merge_repeat		chromOut
chrX	111197044	A	C	999	11 11 11 11 11 11 11 11	38	0	0	19	28	0	0	23	23	0	0	30	19	0	0	36	21	0	0	30	19	0	0	16	22	0	0	28	24	0	0	35	22
chrX	111197046	A	C	999	11 11 11 11 11 11 11 11	38	0	0	19	27	0	0	23	23	0	0	30	19	0	0	37	21	0	0	30	19	0	0	16	22	0	0	28	24	0	0	35	22
chrX	111197361	G	T	999	11 11 11 11 11 11 11 11	49	0	0	29	20	0	0	29	27	0	0	30	28	0	0	30	34	0	0	29	32	0	0	31	20	0	0	27	30	0	0	37	41
chrX	111197365	A	G	999	11 11 11 11 11 11 11 11	46	0	0	28	18	0	0	30	25	0	0	31	27	0	0	30	34	0	0	28	33	0	0	31	20	0	0	26	31	0	0	34	41
chrX	111200128	A	G	999	11 11 11 11 11 11 11 11	41	0	0	33	28	0	0	21	30	0	0	21	25	0	0	21	27	0	0	28	25	0	0	27	23	0	0	17	24	0	0	20	29	merge_repeat		chromOut		nested
chrX	111359163	A	G	999	11 11 11 11 11 11 11 11	43	0	0	45	33	0	0	34	23	0	0	44	27	0	0	30	30	0	0	30	28	0	0	19	24	0	0	35	36	0	0	32	34
chrX	113935615	A	C	999	11 11 11 11 11 11 11 11	22	0	0	15	10	0	0	19	22	0	0	14	11	0	0	15	19	0	0	22	18	0	0	10	12	0	0	13	18	0	0	18	27	merge_repeat	trfMask	chromOut	simple
chrX	115133672	C	A	999	11 11 11 11 11 11 11 11	21	0	0	16	5	0	0	17	9	0	0	20	7	0	0	24	10	0	0	27	7	0	0	22	6	0	0	18	7	1	0	15	9	merge_repeat		chromOut	simple
chrX	115524432	A	G	999	11 11 11 11 11 11 11 11	54	0	0	27	32	0	0	29	31	0	0	43	37	0	0	27	29	0	0	23	31	0	0	26	28	0	0	26	34	0	0	25	32	merge_repeat		chromOut
chrX	116251879	G	T	999	11 11 11 11 11 11 11 11	51	0	0	25	26	0	0	37	32	0	0	37	24	0	0	37	22	0	0	27	27	0	0	46	25	0	0	27	31	0	0	38	35	merge_repeat	trfMask	chromOut	simple
chrX	117098093	G	T	999	11 11 11 11 11 11 11 11	22	0	0	17	12	1	1	21	10	1	0	11	10	0	1	17	7	0	1	19	17	0	0	13	16	0	0	24	7	0	1	12	12	merge_repeat		chromOut		nested
chrX	120117593	A	T	999	11 11 11 11 11 11 11 11	35	0	0	20	15	0	0	21	25	0	0	26	20	0	0	40	25	0	0	37	31	0	0	29	28	0	0	16	30	0	0	29	22	merge_repeat		chromOut		nested
chrX	122522315	C	A	999	11 11 11 11 11 11 11 11	27	0	0	28	12	0	0	27	6	0	0	21	11	0	0	29	8	0	0	19	12	0	0	20	7	0	0	26	5	0	0	21	8	merge_repeat		chromOut		nested
chrX	123230364	G	A	999	11 11 11 11 11 11 11 11	27	0	0	24	14	0	0	25	13	0	0	26	23	0	0	31	26	0	0	18	23	0	0	25	14	0	0	15	12	0	0	21	15	merge_repeat			simple		segmentDup
chrX	124236769	C	T	999	11 11 11 11 11 11 11 11	27	0	0	10	19	0	0	16	17	0	0	21	27	1	0	16	16	1	0	19	12	0	0	12	15	0	1	16	12	1	0	15	17	merge_repeat		chromOut			segmentDup
chrX	125122693	G	T	999	11 11 11 11 11 11 11 11	23	0	0	20	22	0	0	13	10	0	0	12	19	0	0	20	34	0	0	21	24	0	0	14	21	0	0	17	25	0	0	16	26	merge_repeat					segmentDup
chrX	126104302	C	A	999	11 11 11 11 11 11 11 11	37	0	0	23	20	0	0	26	22	0	0	23	19	0	0	28	19	0	0	28	22	0	0	20	25	0	0	22	21	0	0	24	13	merge_repeat		chromOut			segmentDup
chrX	126767873	T	A	999	11 11 11 11 11 11 11 11	24	0	0	19	5	0	0	38	7	0	0	19	15	0	0	27	17	0	0	34	7	0	0	29	14	0	1	30	10	0	0	25	11	merge_repeat		chromOut	simple		segmentDup
chrX	127547665	A	G	999	11 11 11 11 11 11 11 11	40	0	0	31	35	0	0	18	31	0	0	25	27	0	0	22	25	0	0	12	30	0	0	27	35	0	0	25	15	0	0	18	28	merge_repeat		chromOut		nested
chrX	127771413	C	T	999	11 11 11 11 11 11 11 11	25	0	0	13	21	0	0	16	12	0	0	16	16	0	0	14	21	0	0	9	25	0	0	14	11	0	0	14	24	0	0	12	17	merge_repeat		chromOut
chrX	127794009	C	A	999	11 11 11 11 11 11 11 11	25	0	0	9	16	0	0	21	31	0	0	23	13	0	0	9	16	0	0	16	30	0	0	14	28	0	0	27	24	0	0	25	33
chrX	127794016	C	A	999	11 11 11 11 11 11 11 11	23	0	0	9	14	0	0	18	30	0	0	23	12	0	0	9	16	0	0	15	28	0	0	14	27	0	0	27	22	0	0	25	32
chrX	127794023	T	A	999	11 11 11 11 11 11 11 11	24	0	0	9	15	0	0	19	28	0	0	22	12	0	0	9	15	0	0	14	29	0	0	12	25	0	0	27	22	0	0	25	29
chrX	127809862	C	T	999	11 11 11 11 11 11 11 11	58	0	0	27	43	0	0	35	27	0	0	34	24	0	0	39	36	0	0	39	28	0	0	41	22	0	0	45	21	0	0	36	39	merge_repeat		chromOut		nested
chrX	127809884	A	T	999	11 11 11 11 11 11 11 11	57	0	0	25	40	0	0	34	30	0	0	33	24	0	0	39	38	0	0	40	33	0	0	42	22	0	0	42	23	0	0	33	36	merge_repeat		chromOut		nested
chrX	127809898	G	A	999	11 11 11 11 11 11 11 11	61	0	0	25	38	0	0	33	32	0	0	30	31	0	0	40	33	0	0	37	33	0	0	38	28	0	0	39	25	0	0	28	36	merge_repeat		chromOut		nested
chrX	127848055	G	C	999	11 11 11 11 11 11 11 11	54	0	0	33	26	0	0	51	28	0	0	37	30	0	0	51	25	0	0	33	29	0	0	25	29	0	0	33	35	0	0	41	31
chrX	127848060	G	A	999	11 11 11 11 11 11 11 11	50	0	0	36	28	0	0	49	29	0	0	39	31	1	0	48	23	0	0	36	32	0	0	24	26	0	1	35	34	0	0	41	35
chrX	127864418	A	G	999	11 11 11 11 11 11 11 11	31	0	0	15	16	0	0	34	21	0	0	36	12	0	0	30	12	0	0	26	12	0	0	28	10	0	0	26	19	0	0	31	7	merge_repeat		chromOut		nested
chrX	127874262	C	A	999	11 11 11 11 11 11 11 11	50	0	0	31	40	0	0	29	36	0	0	34	23	0	0	26	37	0	0	23	27	0	0	25	37	0	0	20	36	0	0	18	32
chrX	127879181	T	C	999	11 11 11 11 11 11 11 11	27	0	0	20	13	0	0	31	17	0	0	22	12	0	0	30	16	0	0	31	12	0	0	25	12	0	0	26	15	0	0	16	11	merge_repeat		chromOut		nested
chrX	127924187	G	A	999	11 11 11 11 11 11 11 11	44	0	0	32	29	0	0	19	29	0	0	30	25	0	0	24	42	0	0	33	30	0	0	27	32	0	0	22	22	0	0	33	33	merge_repeat		chromOut		nested
chrX	127953735	G	A	999	11 11 11 11 11 11 11 11	40	0	0	34	26	0	0	29	23	0	0	25	23	0	0	18	22	0	0	36	22	0	0	36	25	0	0	24	20	0	0	27	24	merge_repeat		chromOut		nested
chrX	127978539	A	C	999	11 11 11 11 11 11 11 11	28	0	0	14	25	0	0	9	20	0	0	14	24	0	0	13	23	0	0	14	26	0	0	10	18	0	0	13	20	0	0	17	20	merge_repeat		chromOut		nested
chrX	127978540	A	T	999	11 11 11 11 11 11 11 11	28	0	0	13	25	0	0	9	20	0	0	14	24	0	0	13	23	0	0	14	26	0	0	10	18	0	0	13	20	0	0	17	21	merge_repeat		chromOut		nested
chrX	127978542	A	C	999	11 11 11 11 11 11 11 11	28	0	0	14	25	0	0	8	20	0	0	14	24	0	0	13	23	0	0	14	26	0	0	10	18	0	0	13	19	0	0	17	21	merge_repeat		chromOut		nested
chrX	127978545	A	C	999	11 11 11 11 11 11 11 11	28	0	0	14	26	0	0	9	20	0	0	14	25	0	0	13	23	0	0	14	25	0	0	10	18	0	0	13	20	0	0	19	22	merge_repeat		chromOut		nested
chrX	127978551	A	T	999	11 11 11 11 11 11 11 11	34	0	0	15	26	0	0	11	23	0	0	13	28	0	0	14	27	0	0	18	27	0	0	13	24	0	0	18	21	0	0	19	24	merge_repeat		chromOut		nested
chrX	127978624	C	T	999	11 11 11 11 11 11 11 11	28	0	0	16	20	0	0	16	22	0	0	19	29	0	0	17	32	0	0	21	15	0	0	13	24	0	0	21	7	0	0	22	25	merge_repeat		chromOut		nested
chrX	127978669	T	C	999	11 11 11 11 11 11 11 11	26	0	0	18	13	0	0	17	17	0	0	20	17	0	0	21	19	0	0	20	9	0	0	15	17	0	0	20	6	0	0	18	16	merge_repeat		chromOut		nested
chrX	127978694	C	T	999	11 11 11 11 11 11 11 11	22	0	0	19	10	0	0	14	12	0	0	20	12	0	0	21	15	0	0	18	6	0	0	13	10	0	0	16	6	0	0	22	15	merge_repeat		chromOut		nested
chrX	130065761	A	G	999	11 11 11 11 11 11 11 11	59	0	0	41	47	0	1	30	31	0	0	43	32	0	0	50	48	0	0	39	40	0	0	25	34	0	0	24	42	0	0	39	31	merge_repeat	trfMask	chromOut	simple
chrX	131113037	A	C	999	11 11 11 11 11 11 11 11	20	0	0	25	5	0	0	18	8	0	0	15	5	0	0	23	9	0	0	30	3	0	0	19	5	0	0	28	3	0	0	32	4	merge_repeat	trfMask	chromOut	simple
chrX	132785867	G	A	999	11 11 11 11 11 11 11 11	48	0	0	28	20	0	0	30	23	0	0	21	33	0	0	29	20	0	0	30	31	0	0	29	36	0	0	30	31	0	0	24	32
chrX	135875553	A	C	999	11 11 11 11 11 11 11 11	41	0	0	17	36	0	0	28	28	0	0	15	26	0	0	14	34	0	0	31	29	0	0	24	39	0	0	26	29	0	0	15	35	merge_repeat		chromOut		nested
chrX	135973229	A	C	999	11 11 11 11 11 11 11 11	48	0	0	27	27	0	0	22	27	0	0	23	28	0	0	23	36	0	0	28	20	0	0	28	23	0	0	24	28	0	0	30	25
chrX	135973236	A	C	999	11 11 11 11 11 11 11 11	47	0	0	25	27	0	0	24	27	0	0	22	30	0	0	23	36	0	0	29	20	0	0	26	23	0	0	22	25	0	0	28	27
chrX	140898639	T	C	999	11 11 11 11 11 11 11 11	53	0	0	40	19	0	0	27	27	0	0	24	29	0	0	41	41	0	0	42	35	0	0	35	29	0	0	32	30	0	0	30	28	merge_repeat		chromOut		nested
chrX	141646742	C	T	999	11 11 11 11 11 11 11 11	48	0	0	29	53	0	0	35	49	0	0	35	41	0	0	42	34	0	0	41	37	0	0	22	26	0	0	29	30	0	0	31	40
chrX	145533276	T	G	999	11 11 11 11 11 11 11 11	20	0	0	19	13	0	0	26	16	0	0	18	17	0	0	24	19	0	0	28	28	0	0	23	19	0	0	8	12	0	0	8	15	merge_repeat	trfMask	chromOut	simple
chrX	145533278	T	A	999	11 11 11 11 11 11 11 11	22	0	0	19	13	0	0	25	16	0	0	19	19	0	0	24	19	0	0	29	28	0	0	24	19	0	0	8	14	0	0	8	15	merge_repeat	trfMask	chromOut	simple
chrX	146225552	T	A	999	11 11 11 11 11 11 11 11	50	0	0	43	34	0	0	28	30	1	0	35	27	0	0	19	31	0	0	36	30	0	0	33	29	0	0	27	24	0	0	33	45	merge_repeat		chromOut		nested
chrX	151368132	A	G	999	11 11 11 11 11 11 11 11	35	0	0	28	9	0	0	24	22	0	0	28	21	0	0	32	18	0	0	35	10	0	0	24	11	0	0	28	13	0	0	24	16	merge_repeat		chromOut		nested
chrX	154507294	C	T	999	11 11 11 11 11 11 11 11	37	0	0	21	16	0	0	32	32	0	0	22	33	0	0	38	32	0	0	39	41	0	0	26	26	0	0	36	28	0	0	24	29	merge_repeat		chromOut		nested
chrX	156314934	C	T	999	11 11 11 11 11 11 11 11	42	0	0	26	32	0	0	43	35	0	0	30	24	0	0	27	33	0	0	33	21	0	0	32	25	0	0	29	32	0	0	21	21	merge_repeat		chromOut		nested
chrX	158140862	T	A	999	11 11 11 11 11 11 11 11	40	0	0	20	30	0	0	17	27	0	0	19	22	0	0	15	26	0	0	20	21	0	0	20	22	0	0	15	25	0	0	16	27	merge_repeat	trfMask		simple
chrX	158870453	T	C	999	11 11 11 11 11 11 11 11	22	0	0	4	18	1	0	10	24	0	0	5	31	0	1	4	35	0	0	10	21	0	0	5	31	0	0	4	31	0	0	8	18	merge_repeat		chromOut	simple	nested
chrX	160048163	T	G	999	11 11 11 11 11 11 11 11	24	0	0	18	13	0	0	14	14	0	0	9	15	0	0	20	15	0	0	32	19	0	0	17	18	0	0	16	21	0	0	19	16	merge_repeat		chromOut
chrX	160169692	A	T	999	11 11 11 11 11 11 11 11	34	0	0	15	24	0	0	11	34	0	0	11	30	0	0	10	24	0	0	16	32	0	0	11	25	1	0	14	28	0	0	21	25	merge_repeat		chromOut