chr position ref alt quality samtools_GT_RAW min_depth 1RF 1RR 1AF 1AR 2RF 2RR 2AF 2AR 3RF 3RR 3AF 3AR 4RF 4RR 4AF 4AR 5RF 5RR 5AF 5AR 6RF 6RR 6AF 6AR 7RF 7RR 7AF 7AR 8RF 8RR 8AF 8AR merge_repeat trfMask chromOut simple nested segmentDup
chr9 3007071 G T 999 11 11 11 11 11 11 11 11 961 0 1 32 1002 1 6 36 988 2 6 30 988 0 6 23 987 1 4 23 933 0 5 22 950 1 3 27 1003 0 4 28 1000 merge_repeat chromOut simple
chr9 3018735 G T 999 11 11 11 11 11 11 11 11 305 0 1 20 511 0 1 14 296 0 3 23 471 0 1 17 344 0 2 13 333 0 3 8 294 0 4 17 450 0 1 10 408 merge_repeat chromOut simple
chr9 3018752 C G 999 11 11 11 11 11 11 11 11 303 1 2 16 544 1 1 8 328 3 1 17 485 1 3 13 341 1 2 8 321 0 1 5 297 2 4 16 480 0 2 9 434 merge_repeat chromOut simple
chr9 3031632 A C 464 11 11 11 11 11 11 11 11 20 4 2 22 67 0 2 27 63 0 0 14 25 0 0 9 12 0 0 6 14 0 1 10 11 0 1 9 30 2 0 9 46 merge_repeat chromOut simple
chr9 3031643 T G 467 11 11 11 11 11 11 11 11 21 2 4 35 67 0 4 37 67 0 0 24 30 0 0 13 11 1 1 10 12 0 0 9 12 1 1 16 30 0 2 15 43 merge_repeat chromOut simple
chr9 3363257 T C 999 11 11 11 11 11 11 11 11 54 0 0 26 31 0 0 26 36 0 0 34 20 0 0 36 32 0 0 43 36 0 0 25 31 0 0 43 32 0 0 31 29 merge_repeat chromOut nested
chr9 3675843 C G 999 11 11 11 11 11 11 11 11 31 0 0 18 18 0 0 15 27 0 0 18 30 0 0 7 24 0 0 9 23 0 0 15 23 0 1 13 24 0 0 20 24 merge_repeat chromOut nested
chr9 5568839 A G 999 11 11 11 11 11 11 11 11 35 0 0 21 29 0 0 18 21 0 0 13 23 0 0 18 32 0 0 30 23 0 0 24 26 0 0 20 32 0 0 18 17 merge_repeat chromOut nested
chr9 6491009 A T 999 11 11 11 11 11 11 11 11 54 0 0 34 26 0 0 33 23 0 0 34 28 0 0 30 38 0 0 23 31 0 0 27 27 0 0 33 25 0 0 33 37 merge_repeat chromOut nested
chr9 6663687 A G 999 11 11 11 11 11 11 11 11 33 0 0 22 22 0 0 16 20 0 0 19 27 0 0 18 33 0 0 18 21 0 0 13 20 0 0 19 22 0 0 21 22 merge_repeat chromOut simple
chr9 7483526 C A 999 11 11 11 11 11 11 11 11 22 0 0 23 11 0 0 32 4 0 0 21 4 0 0 16 10 0 0 29 9 0 0 17 5 0 0 27 12 0 0 20 11 merge_repeat chromOut
chr9 7883707 C T 999 11 11 11 11 11 11 11 11 55 0 0 40 20 0 0 39 23 0 0 34 29 0 0 39 26 0 0 35 31 0 0 30 25 0 0 39 31 0 0 32 30 merge_repeat chromOut nested
chr9 9405093 C G 999 11 11 11 11 11 11 11 11 40 0 0 26 29 0 0 26 23 0 0 15 33 0 0 21 34 0 0 15 25 0 0 22 19 0 0 20 25 0 0 16 32 @
chr9 9808212 T G 999 11 11 11 11 11 11 11 11 60 0 0 35 28 0 0 29 35 0 0 38 27 0 0 22 43 0 0 31 29 0 0 31 36 0 0 26 34 0 0 38 38 @
chr9 10742131 A T 999 11 11 11 11 11 11 11 11 63 0 0 35 47 0 0 38 50 0 0 27 36 0 0 34 53 0 0 24 47 0 0 31 44 0 0 38 41 0 0 39 45 merge_repeat chromOut nested
chr9 11079786 G A 999 11 11 11 11 11 11 11 11 53 0 0 33 22 0 0 35 18 0 0 28 26 0 0 32 30 0 0 31 26 0 0 29 25 0 0 33 24 0 0 29 33 merge_repeat chromOut nested
chr9 13168566 C T 999 11 11 11 11 11 11 11 11 25 0 0 13 12 0 0 20 9 0 0 19 17 0 0 17 11 0 0 21 16 0 0 13 14 0 0 18 12 0 0 14 12 merge_repeat chromOut
chr9 13168594 T A 999 11 11 11 11 11 11 11 11 21 0 0 12 9 0 0 17 9 0 0 21 14 0 0 18 14 0 0 18 14 0 0 15 13 0 0 20 15 0 0 11 13 merge_repeat chromOut
chr9 13247978 T C 999 11 11 11 11 11 11 11 11 42 0 0 33 38 0 0 35 26 0 0 39 38 0 0 41 36 0 0 30 18 0 0 19 35 0 0 31 35 0 0 24 18 @
chr9 13248141 T G 999 11 11 11 11 11 11 11 11 42 0 0 18 24 0 0 28 19 0 0 27 22 0 0 26 26 0 0 29 28 0 0 22 21 0 0 30 20 0 0 24 19 @
chr9 13248142 T A 999 11 11 11 11 11 11 11 11 42 0 0 18 24 0 0 28 19 0 0 27 22 0 0 25 26 0 0 29 28 0 0 22 21 0 0 30 20 0 0 24 19 @
chr9 13248143 T G 999 11 11 11 11 11 11 11 11 42 0 0 18 24 0 0 28 19 0 0 27 22 0 0 26 26 0 0 29 28 0 0 22 21 0 0 30 20 0 0 24 19 @
chr9 13249318 A T 999 11 11 11 11 11 11 11 11 66 0 0 32 34 0 0 31 40 0 0 32 39 0 0 47 53 0 0 33 33 0 0 36 30 0 0 32 42 0 0 30 43 merge_repeat chromOut
chr9 13253028 A T 999 11 11 11 11 11 11 11 11 64 0 0 52 30 0 0 32 38 0 0 36 31 0 0 41 39 0 0 43 34 0 0 51 24 0 0 35 34 0 0 35 29 @
chr9 13265002 C G 999 11 11 11 11 11 11 11 11 33 0 0 8 34 0 0 10 23 0 0 15 28 0 0 18 27 0 0 18 28 0 0 22 18 0 0 12 21 0 0 16 30 merge_repeat chromOut
chr9 13265005 G C 999 11 11 11 11 11 11 11 11 33 0 0 8 34 0 0 10 23 0 0 15 28 0 0 17 26 0 0 17 28 0 0 22 18 0 0 12 21 0 0 16 29 merge_repeat chromOut
chr9 13265006 G C 999 11 11 11 11 11 11 11 11 33 0 0 8 34 0 0 10 23 0 0 15 28 0 0 17 26 0 0 17 28 0 0 22 18 0 0 12 21 0 0 16 29 merge_repeat chromOut
chr9 13272178 C T 999 11 11 11 11 11 11 11 11 29 0 0 23 15 0 0 18 25 0 0 20 17 0 0 18 20 0 0 15 17 0 0 13 16 0 0 25 22 0 0 21 26 @
chr9 13287210 C T 999 11 11 11 11 11 11 11 11 38 0 0 27 12 0 0 31 16 0 0 23 26 0 0 29 16 0 0 25 18 0 0 26 12 0 0 27 12 0 0 24 19 @
chr9 13287225 C T 999 11 11 11 11 11 11 11 11 30 0 0 20 10 0 0 29 16 0 0 22 23 0 0 27 15 0 0 25 16 0 0 26 10 0 0 27 12 0 0 22 19 @
chr9 13287250 A G 999 11 11 11 11 11 11 11 11 24 0 0 16 8 0 0 21 15 0 0 18 19 0 0 20 14 0 0 23 13 0 0 22 9 0 0 23 10 0 0 17 18 @
chr9 13287269 G T 999 11 11 11 11 11 11 11 11 21 0 0 13 8 0 0 17 11 0 0 16 14 0 0 17 10 0 0 18 10 0 0 19 6 0 0 19 7 0 0 13 12 @
chr9 13287453 A C 999 11 11 11 11 11 11 11 11 34 0 0 24 19 0 0 29 14 0 0 17 22 0 0 18 20 0 0 14 20 0 0 22 16 0 0 15 22 0 0 16 19 @
chr9 13287541 G C 999 11 11 11 11 11 11 11 11 48 0 0 28 33 0 0 31 33 0 0 33 21 0 0 23 30 0 0 26 22 0 0 32 19 0 0 31 23 0 0 26 28 @
chr9 13290283 A G 999 11 11 11 11 11 11 11 11 21 0 0 6 19 0 0 7 16 0 0 2 26 0 0 3 33 0 0 4 24 0 0 3 18 0 0 7 23 0 0 4 21 merge_repeat chromOut nested
chr9 13291174 T G 999 11 11 11 11 11 11 11 11 25 0 0 16 15 0 0 19 18 0 0 23 7 0 1 20 12 0 0 17 10 0 0 18 7 0 0 22 15 0 0 21 11 merge_repeat chromOut nested
chr9 13300947 A G 999 11 11 11 11 11 11 11 11 43 0 0 28 33 0 0 36 38 0 0 39 44 0 0 32 36 0 0 35 42 0 0 20 34 0 0 21 22 0 0 28 41 @
chr9 13312479 C G 999 11 11 11 11 11 11 11 11 49 0 0 24 39 0 0 29 26 0 0 26 26 0 0 35 30 0 0 35 30 0 0 29 30 0 1 30 25 0 0 23 26 @
chr9 13312516 G A 999 11 11 11 11 11 11 11 11 35 0 0 24 30 0 0 30 17 0 0 21 15 0 0 28 24 0 0 28 16 0 0 23 23 0 0 25 19 0 0 21 14 @
chr9 13312551 T G 999 11 11 11 11 11 11 11 11 25 0 0 17 18 0 0 23 7 0 0 18 8 0 0 19 16 0 0 22 13 0 0 19 13 0 0 14 11 0 0 18 9 @
chr9 13312675 G T 999 11 11 11 11 11 11 11 11 25 0 0 23 21 0 0 20 13 0 0 25 22 0 0 11 15 0 0 19 12 0 0 17 9 0 0 10 15 0 0 25 14 @
chr9 13312726 A T 999 11 11 11 11 11 11 11 11 42 0 0 29 40 0 0 25 22 0 0 32 32 0 0 18 24 0 0 23 21 0 0 22 24 0 0 19 24 0 0 36 26 @
chr9 13312781 A T 999 11 11 11 11 11 11 11 11 50 0 0 33 41 0 0 30 26 0 0 27 36 0 0 28 36 0 0 35 25 0 0 26 28 0 0 22 28 0 0 38 25 @
chr9 13324125 A T 999 11 11 11 11 11 11 11 11 29 0 0 2 35 0 0 7 30 0 0 6 40 0 0 9 30 0 0 4 25 0 0 5 29 0 0 6 35 0 0 3 43 @
chr9 13416232 A G 999 11 11 11 11 11 11 11 11 52 0 0 23 47 0 0 23 36 0 0 23 35 0 0 27 48 0 0 37 37 0 0 23 31 0 0 31 29 0 0 21 31 merge_repeat chromOut
chr9 13416412 G A 999 11 11 11 11 11 11 11 11 24 0 0 19 13 0 0 16 25 0 0 11 13 0 0 17 17 0 0 16 16 0 0 21 19 0 0 13 20 0 0 5 26 merge_repeat chromOut
chr9 13416494 G A 999 11 11 11 11 11 11 11 11 45 0 0 31 30 0 0 30 33 0 0 23 22 1 0 26 23 0 0 23 38 0 0 28 25 0 0 26 35 0 0 29 24 merge_repeat chromOut
chr9 14023134 A T 999 11 11 11 11 11 11 11 11 59 0 0 42 33 0 0 40 25 0 0 33 26 0 0 41 29 0 0 41 27 0 0 29 34 0 0 40 35 0 0 34 33 @
chr9 14023671 A G 999 11 11 11 11 11 11 11 11 46 0 0 30 34 0 0 33 32 0 0 32 37 0 0 22 24 0 0 27 30 0 0 36 21 0 0 28 25 0 0 20 34 @
chr9 14166905 G T 999 11 11 11 11 11 11 11 11 41 0 0 23 18 0 0 27 25 0 0 23 21 0 0 23 23 0 0 29 23 0 0 16 26 1 0 21 24 1 0 21 21 merge_repeat trfMask chromOut simple
chr9 15305924 G A 999 11 11 11 11 11 11 11 11 22 0 0 7 15 0 0 4 29 0 0 7 16 0 0 5 23 0 0 8 20 0 0 2 27 0 0 4 27 0 0 10 19 @
chr9 15600520 C T 999 11 11 11 11 11 11 11 11 26 0 0 14 14 0 0 18 8 0 0 15 21 0 0 27 24 0 0 20 26 0 0 16 23 0 0 14 12 0 0 15 15 merge_repeat trfMask chromOut simple
chr9 16000495 T C 999 11 11 11 11 11 11 11 11 43 2 1 39 23 0 0 29 26 0 0 29 29 0 2 32 41 1 2 39 33 1 0 22 20 0 0 35 32 1 1 37 35 merge_repeat trfMask chromOut simple
chr9 16013000 A G 999 11 11 11 11 11 11 11 11 38 0 0 21 17 0 0 21 25 0 0 29 17 0 0 24 27 0 0 31 26 0 0 17 23 0 0 24 26 0 0 21 21 merge_repeat chromOut nested
chr9 16089000 A G 999 11 11 11 11 11 11 11 11 31 0 0 8 23 0 0 16 29 0 0 20 37 0 0 28 27 0 0 24 35 0 0 21 29 0 0 21 26 0 0 13 26 @
chr9 17572638 G C 999 11 11 11 11 11 11 11 11 33 0 0 12 25 0 0 11 30 0 0 7 26 0 0 11 31 0 0 5 31 0 0 8 26 0 0 7 26 0 0 8 26 merge_repeat chromOut nested
chr9 18776703 G T 999 11 11 11 11 11 11 11 11 41 0 0 23 19 0 0 27 15 0 0 30 26 0 0 26 24 0 0 29 23 0 0 24 17 0 0 26 18 0 0 26 19 merge_repeat chromOut nested
chr9 18779184 G T 999 11 11 11 11 11 11 11 11 37 0 0 20 21 0 0 15 22 0 0 23 31 0 0 15 23 0 0 25 21 0 0 17 25 0 0 30 17 0 0 22 23 merge_repeat chromOut
chr9 21201955 T C 999 11 11 11 11 11 11 11 11 35 0 0 21 23 0 0 17 18 0 0 18 26 0 0 24 24 0 0 30 31 0 0 18 19 0 0 20 27 0 0 13 24 merge_repeat chromOut
chr9 21717148 A G 999 11 11 11 11 11 11 11 11 38 0 0 26 22 0 0 25 20 0 0 16 26 0 1 31 28 0 0 19 28 0 0 20 23 0 0 19 19 0 0 24 18 merge_repeat chromOut
chr9 22795124 A G 999 11 11 11 11 11 11 11 11 23 0 0 13 10 0 0 23 9 0 0 19 18 0 0 11 17 0 0 18 28 0 0 26 24 0 0 20 21 0 0 12 18 merge_repeat trfMask chromOut simple nested
chr9 22799906 T C 999 11 11 11 11 11 11 11 11 45 0 0 21 28 0 0 27 32 0 0 25 28 0 0 26 39 0 0 27 29 0 0 20 25 0 0 18 37 0 0 27 23 merge_repeat chromOut
chr9 22854061 A G 999 11 11 11 11 11 11 11 11 45 0 0 21 24 0 0 30 28 0 0 31 26 0 0 28 30 0 0 37 37 0 0 28 24 0 0 31 23 0 0 31 36 merge_repeat chromOut nested
chr9 25350464 G A 999 11 11 11 11 11 11 11 11 43 0 0 32 31 0 0 26 30 0 0 25 23 0 0 26 31 0 0 25 24 0 0 23 20 0 0 27 29 0 0 40 29 merge_repeat chromOut
chr9 26809460 G A 999 11 11 11 11 11 11 11 11 33 0 0 17 25 0 0 29 29 0 0 27 21 0 0 18 23 0 0 22 25 0 0 25 36 0 0 26 16 0 0 18 15 merge_repeat chromOut nested
chr9 26842143 T C 999 11 11 11 11 11 11 11 11 48 0 0 35 28 0 0 24 42 0 0 36 30 0 0 30 26 0 0 21 28 0 0 24 24 0 0 30 33 0 0 30 31 merge_repeat chromOut
chr9 26884133 T C 999 11 11 11 11 11 11 11 11 26 0 0 17 12 1 0 17 12 0 0 22 4 0 0 22 12 0 0 12 14 0 0 16 15 0 0 15 14 0 0 20 9 merge_repeat chromOut
chr9 27060164 G A 999 11 11 11 11 11 11 11 11 36 0 0 22 19 0 0 15 24 0 0 23 24 0 0 24 17 0 0 15 26 0 0 14 22 0 0 32 29 0 0 27 18 merge_repeat chromOut
chr9 27671846 T C 999 11 11 11 11 11 11 11 11 24 1 0 26 27 0 0 25 16 1 0 5 18 0 0 17 13 0 0 22 30 0 0 22 21 0 0 25 16 0 0 20 27 merge_repeat chromOut simple
chr9 28908391 A G 999 11 11 11 11 11 11 11 11 46 0 1 21 24 0 0 41 33 0 0 39 22 0 0 23 48 0 0 31 28 0 0 23 26 0 0 36 29 0 0 28 20 @
chr9 28908399 A G 999 11 11 11 11 11 11 11 11 46 0 0 20 26 0 0 42 35 0 0 41 23 0 0 22 48 0 0 31 30 0 0 24 26 0 0 36 31 0 0 31 22 @
chr9 28998980 C G 999 11 11 11 11 11 11 11 11 29 0 0 20 15 0 0 28 15 0 0 21 23 0 0 15 14 0 0 25 19 0 0 14 22 0 0 17 27 0 0 19 24 @
chr9 31865147 A T 999 11 11 11 11 11 11 11 11 35 0 0 29 19 0 0 35 17 0 0 32 22 0 0 21 21 0 0 32 19 0 0 29 22 0 0 22 13 0 0 22 21 @
chr9 31921000 C T 999 11 11 11 11 11 11 11 11 36 0 0 28 8 0 0 32 15 0 0 26 14 0 0 19 19 0 0 30 16 0 0 27 11 0 0 27 13 0 0 30 11 @
chr9 33085864 A G 999 11 11 11 11 11 11 11 11 24 0 0 21 6 0 0 19 11 0 0 12 15 0 0 17 12 0 0 17 12 0 0 15 14 0 0 11 14 0 0 14 10 merge_repeat chromOut simple
chr9 33085868 A G 999 11 11 11 11 11 11 11 11 24 0 0 21 6 0 0 19 11 0 0 12 16 0 0 17 12 0 0 18 12 0 0 15 14 0 0 11 14 0 0 14 10 merge_repeat chromOut simple
chr9 33288697 T C 999 11 11 11 11 11 11 11 11 39 0 0 31 23 0 0 22 26 0 0 26 17 0 0 29 24 0 0 29 22 0 0 21 19 0 0 30 26 0 0 18 21 @
chr9 33481487 T C 999 11 11 11 11 11 11 11 11 43 0 0 27 16 0 0 37 20 0 0 37 23 0 0 35 29 1 0 22 34 0 0 27 17 0 0 35 13 0 0 31 26 @
chr9 35546233 A C 999 11 11 11 11 11 11 11 11 49 0 0 26 31 0 0 33 32 0 0 29 24 0 0 35 36 0 0 22 38 0 0 31 30 0 0 36 30 0 0 22 27 merge_repeat chromOut
chr9 35899843 A G 999 11 11 11 11 11 11 11 11 54 0 0 21 33 0 0 27 42 0 0 26 32 0 0 27 33 0 0 35 33 0 0 29 29 0 0 32 41 0 0 25 33 merge_repeat chromOut nested segmentDup
chr9 37004044 G C 999 11 11 11 11 11 11 11 11 53 0 0 21 43 0 0 17 44 0 0 25 46 0 0 27 49 0 0 24 40 0 0 28 41 0 0 27 42 0 0 19 34 @
chr9 37195642 A C 999 11 11 11 11 11 11 11 11 33 0 0 19 31 0 0 18 21 0 0 14 28 0 0 22 22 0 0 19 23 0 0 28 29 0 0 18 15 0 0 24 28 merge_repeat trfMask chromOut simple
chr9 37435510 G T 999 11 11 11 11 11 11 11 11 41 0 0 40 29 0 0 27 26 0 0 30 31 0 0 35 28 0 0 32 23 0 0 30 17 0 0 26 15 0 0 28 27 @
chr9 37435569 A G 999 11 11 11 11 11 11 11 11 48 0 0 37 23 0 0 39 28 0 0 33 30 0 0 47 30 0 0 36 27 0 0 33 18 0 0 33 15 0 0 35 26 @
chr9 37486356 C A 999 11 11 11 11 11 11 11 11 22 0 0 10 17 0 0 8 18 1 0 8 23 0 0 12 12 0 0 8 18 0 0 9 17 0 0 11 23 0 0 11 11 merge_repeat chromOut simple
chr9 37514331 C G 999 11 11 11 11 11 11 11 11 56 0 0 37 29 0 0 41 22 0 0 38 25 0 0 42 35 0 0 26 30 0 0 39 26 0 0 28 36 0 0 38 29 @
chr9 37580231 A C 999 11 11 11 11 11 11 11 11 26 0 0 14 24 0 0 6 20 0 0 8 27 0 0 14 23 0 0 15 21 0 0 14 24 0 0 10 34 0 0 9 31 @
chr9 37580232 A T 999 11 11 11 11 11 11 11 11 26 0 0 14 25 0 0 6 20 0 0 8 27 0 0 14 23 0 0 15 21 0 0 14 24 0 0 10 34 0 0 9 30 @
chr9 37580261 T C 999 11 11 11 11 11 11 11 11 26 0 0 4 25 0 0 5 24 0 0 4 31 0 0 6 20 0 0 7 23 0 0 11 24 0 0 3 34 0 0 4 26 @
chr9 37580265 G T 999 11 11 11 11 11 11 11 11 25 0 0 3 25 0 0 5 24 0 0 4 31 0 0 6 19 0 0 7 23 0 0 11 24 0 0 3 34 0 0 4 26 @
chr9 37580266 G T 999 11 11 11 11 11 11 11 11 25 0 0 3 25 0 0 5 24 0 0 4 31 0 0 6 19 0 0 7 23 0 0 11 24 0 0 3 34 0 0 4 26 @
chr9 37580271 C G 999 11 11 11 11 11 11 11 11 26 0 0 3 26 0 0 5 25 0 0 4 32 0 0 6 20 0 0 7 24 0 0 11 24 0 0 3 34 0 0 5 28 @
chr9 37580309 G T 999 11 11 11 11 11 11 11 11 30 0 0 2 29 0 0 4 30 0 0 2 38 0 0 2 36 0 0 8 22 0 0 3 36 0 0 4 32 0 0 6 37 @
chr9 37580359 A C 999 11 11 11 11 11 11 11 11 26 0 0 4 26 0 0 4 31 0 0 4 35 0 0 4 35 0 0 9 31 0 0 6 40 0 0 5 21 0 0 5 37 @
chr9 37580371 G T 999 11 11 11 11 11 11 11 11 30 0 0 4 26 0 0 2 33 0 0 4 34 0 0 6 36 0 0 9 33 0 0 6 41 0 0 6 25 0 0 6 39 @
chr9 37580405 A T 999 11 11 11 11 11 11 11 11 33 0 0 6 30 0 0 3 30 0 0 3 33 0 0 8 40 0 0 9 32 0 0 6 42 0 0 7 27 0 0 5 44 @
chr9 38076776 T C 999 11 11 11 11 11 11 11 11 35 0 0 48 16 0 0 29 18 0 0 40 20 0 0 33 20 0 0 35 12 0 0 43 16 0 0 21 14 0 0 44 30 merge_repeat chromOut nested
chr9 38189710 G T 999 11 11 11 11 11 11 11 11 43 0 0 31 33 0 0 26 30 0 0 25 28 0 0 29 18 0 0 29 39 0 0 17 26 0 0 28 24 0 0 26 39 @
chr9 38562453 C T 999 11 11 11 11 11 11 11 11 22 0 1 9 29 0 0 7 26 0 0 2 20 0 0 16 25 0 0 11 23 0 0 11 26 0 0 9 21 0 0 6 17 merge_repeat chromOut nested
chr9 39514696 G A 999 11 11 11 11 11 11 11 11 60 0 0 42 34 0 0 35 44 0 0 42 25 0 0 29 38 0 0 40 28 0 0 29 38 0 0 28 32 0 0 27 43 merge_repeat chromOut nested
chr9 39527171 A T 959 11 11 11 11 11 11 11 11 31 0 0 7 25 0 0 13 22 0 0 19 25 0 0 16 26 0 0 15 22 0 0 13 27 0 1 4 26 0 0 11 24 merge_repeat chromOut
chr9 39757793 A C 999 11 11 11 11 11 11 11 11 51 0 0 24 34 0 0 25 31 0 0 37 40 0 0 34 48 0 0 25 26 0 0 26 37 0 0 39 31 0 0 27 24 merge_repeat nested
chr9 39802911 G T 999 11 11 11 11 11 11 11 11 33 0 0 32 19 0 0 35 20 0 0 23 11 0 0 27 29 0 0 38 18 0 0 16 17 0 0 31 23 0 0 21 15 merge_repeat chromOut nested
chr9 39845045 A G 999 11 11 11 11 11 11 11 11 21 0 0 11 12 0 0 6 20 0 0 14 19 0 0 12 21 0 0 13 14 0 0 10 16 0 0 6 20 0 0 6 15 merge_repeat chromOut nested
chr9 42204684 A C 999 11 11 11 11 11 11 11 11 22 0 0 14 14 0 0 13 26 0 0 21 6 0 0 14 14 0 0 24 17 0 0 12 10 0 0 16 7 0 0 20 14 merge_repeat trfMask chromOut simple
chr9 42204687 G A 999 11 11 11 11 11 11 11 11 22 0 0 14 14 0 0 13 26 0 0 21 7 0 0 13 15 0 0 25 17 0 0 12 11 0 0 15 7 0 0 21 13 merge_repeat trfMask chromOut simple
chr9 42204688 A C 999 11 11 11 11 11 11 11 11 21 0 0 14 14 0 0 13 23 0 0 21 7 0 0 13 15 0 0 25 17 0 0 12 11 0 0 14 7 0 0 20 13 merge_repeat trfMask chromOut simple
chr9 42204689 G A 999 11 11 11 11 11 11 11 11 22 0 0 14 14 0 0 13 26 0 0 21 7 0 0 13 16 0 0 25 17 0 0 12 11 0 0 15 7 0 0 21 13 merge_repeat trfMask chromOut simple
chr9 43072603 G T 999 11 11 11 11 11 11 11 11 28 1 0 22 21 0 0 12 16 0 0 31 19 0 0 25 29 0 0 25 27 0 0 22 16 0 0 14 15 0 0 19 19 @
chr9 43146492 T C 999 11 11 11 11 11 11 11 11 27 0 0 16 16 0 0 18 17 0 0 15 18 0 0 22 15 0 0 11 16 0 0 17 16 0 0 17 17 0 0 16 16 merge_repeat chromOut
chr9 44908589 A G 999 11 11 11 11 11 11 11 11 58 0 0 24 34 0 0 29 37 0 0 21 38 0 0 38 24 0 0 37 25 0 0 32 34 0 0 36 37 0 0 32 37 @
chr9 44918710 T G 999 11 11 11 11 11 11 11 11 54 0 0 27 29 0 0 33 36 0 0 24 41 0 0 43 53 0 0 34 39 0 0 26 28 0 0 30 39 0 0 29 35 merge_repeat chromOut nested
chr9 46157954 G T 999 11 11 11 11 11 11 11 11 22 0 0 26 9 0 0 17 5 0 0 24 8 0 0 28 9 0 0 23 11 0 0 16 11 0 0 24 4 1 0 25 4 @
chr9 48187017 T G 999 11 11 11 11 11 11 11 11 32 0 0 30 7 0 0 32 11 0 0 24 14 0 0 31 14 0 0 27 14 0 0 21 11 0 0 28 16 0 0 32 9 merge_repeat nested
chr9 50358463 C A 999 11 11 11 11 11 11 11 11 30 0 0 7 28 0 0 6 26 0 0 5 26 0 0 14 16 0 0 12 21 0 0 15 31 0 0 8 28 0 0 6 25 @
chr9 50358466 C A 999 11 11 11 11 11 11 11 11 30 0 0 7 28 0 0 6 26 0 0 5 26 0 0 14 16 0 0 12 20 0 0 15 31 0 0 8 28 0 0 6 26 @
chr9 50358470 C A 999 11 11 11 11 11 11 11 11 31 0 0 8 28 0 0 6 26 0 0 5 26 0 0 13 18 0 0 14 21 0 0 14 31 0 0 7 28 0 0 7 26 @
chr9 50358504 C T 999 11 11 11 11 11 11 11 11 28 0 0 12 16 0 0 10 21 0 0 15 18 0 0 29 12 0 0 21 20 0 0 20 18 0 0 17 21 0 0 14 17 @
chr9 50372638 A G 999 11 11 11 11 11 11 11 11 28 0 0 13 23 0 0 18 24 0 0 17 24 0 0 19 25 0 0 18 25 0 0 11 19 0 0 13 19 0 0 10 18 @
chr9 50372645 A G 999 11 11 11 11 11 11 11 11 28 0 0 14 23 0 0 20 23 0 0 19 24 0 0 22 24 0 0 19 25 0 0 16 19 0 0 13 20 0 0 11 17 @
chr9 50417677 A T 999 11 11 11 11 11 11 11 11 50 0 0 25 25 0 0 28 42 0 0 34 31 0 0 34 27 0 0 26 36 0 0 31 23 0 0 34 32 0 0 23 34 @
chr9 50640183 A G 999 11 11 11 11 11 11 11 11 47 0 0 37 41 0 0 28 25 0 0 31 29 0 0 27 32 0 0 28 30 0 0 22 25 0 0 25 30 0 0 20 34 @
chr9 56011041 A G 999 11 11 11 11 11 11 11 11 27 0 0 18 17 0 0 28 16 0 0 15 12 0 0 28 20 0 0 35 16 0 0 18 17 0 0 21 15 0 0 29 19 merge_repeat chromOut nested
chr9 56223610 T C 999 11 11 11 11 11 11 11 11 200 0 0 182 18 0 0 235 17 0 0 222 19 0 0 225 23 0 0 305 32 0 0 200 21 0 0 212 25 0 0 188 14 merge_repeat chromOut nested
chr9 56757104 T C 999 11 11 11 11 11 11 11 11 50 0 0 29 27 0 0 18 34 0 0 24 30 0 0 32 38 0 0 30 36 0 0 23 34 0 0 26 24 0 0 21 35 @
chr9 57211647 T C 999 11 11 11 11 11 11 11 11 25 0 0 14 11 0 0 19 32 0 0 15 31 0 0 19 33 0 0 20 49 0 0 13 23 0 0 17 19 0 0 16 19 merge_repeat nested
chr9 58348501 G T 999 11 11 11 11 11 11 11 11 29 0 0 21 21 0 0 16 15 0 0 17 12 1 0 30 19 0 0 13 30 0 0 16 26 0 0 18 21 0 0 19 32 merge_repeat trfMask chromOut simple nested
chr9 58789598 A G 999 11 11 11 11 11 11 11 11 38 0 0 21 17 0 0 30 27 0 0 36 18 0 0 34 24 0 0 29 20 0 0 18 28 0 0 32 19 0 0 25 19 merge_repeat chromOut
chr9 60385333 A G 999 11 11 11 11 11 11 11 11 42 0 0 39 12 0 0 36 6 0 0 37 15 0 0 41 17 0 0 35 27 0 0 37 18 0 0 39 15 0 0 33 18 @
chr9 60385558 T C 999 11 11 11 11 11 11 11 11 21 0 0 18 9 0 0 15 8 0 0 24 4 0 0 26 9 0 0 14 7 0 0 23 6 0 0 20 9 0 0 17 10 @
chr9 60697486 G C 999 11 11 11 11 11 11 11 11 42 0 0 9 33 0 0 10 49 0 0 11 45 0 0 16 33 0 0 18 35 0 0 23 34 0 0 17 46 0 0 16 40 merge_repeat chromOut
chr9 60922362 C A 999 11 11 11 11 11 11 11 11 39 0 0 25 29 0 0 26 21 0 0 26 13 0 0 30 22 0 0 34 26 0 0 33 25 0 0 24 23 0 0 22 20 merge_repeat chromOut nested
chr9 60922363 A T 999 11 11 11 11 11 11 11 11 39 0 0 24 29 0 0 26 21 0 0 26 13 0 0 30 22 0 0 34 26 0 0 33 25 0 0 24 23 0 0 23 20 merge_repeat chromOut nested
chr9 60922364 C T 999 11 11 11 11 11 11 11 11 39 0 0 25 29 0 0 26 21 0 0 26 13 0 0 30 22 0 0 34 26 0 0 33 25 0 0 24 23 0 0 23 20 merge_repeat chromOut nested
chr9 61567325 C T 999 11 11 11 11 11 11 11 11 41 0 0 31 21 0 0 37 14 0 0 25 16 0 0 27 24 0 0 45 22 0 0 23 21 0 0 32 14 0 0 30 18 merge_repeat trfMask chromOut simple nested
chr9 61567363 G A 999 11 11 11 11 11 11 11 11 41 0 0 35 21 0 0 39 18 0 0 28 15 0 0 27 24 0 0 37 25 0 0 28 25 0 0 28 13 0 0 36 18 merge_repeat nested
chr9 62505146 T C 999 11 11 11 11 11 11 11 11 43 0 0 19 24 0 0 20 26 0 0 29 28 0 0 28 31 0 0 22 41 0 0 22 21 0 0 30 27 0 0 32 19 @
chr9 62505212 T C 999 11 11 11 11 11 11 11 11 40 0 0 14 28 0 0 14 26 0 0 21 22 0 0 22 27 0 0 22 36 0 0 26 19 0 0 17 23 1 0 20 23 merge_repeat chromOut
chr9 63222804 G T 999 11 11 11 11 11 11 11 11 21 0 0 19 7 0 0 18 12 0 0 25 12 0 0 20 11 0 0 30 12 0 0 19 11 0 0 16 23 0 0 15 6 merge_repeat chromOut simple
chr9 64010439 G T 999 11 11 11 11 11 11 11 11 21 0 0 10 21 0 0 16 22 0 0 18 15 0 0 10 31 0 0 22 24 0 0 18 20 0 0 4 17 0 0 12 13 merge_repeat chromOut simple
chr9 64010452 G T 999 11 11 11 11 11 11 11 11 28 0 0 9 22 0 0 12 26 0 0 13 18 0 0 5 34 0 0 19 25 0 0 16 21 0 0 9 20 0 0 12 16 merge_repeat chromOut simple
chr9 64010460 G T 999 11 11 11 11 11 11 11 11 28 0 0 12 21 0 0 11 26 0 0 14 20 0 0 6 34 0 0 22 26 0 0 19 21 0 0 12 23 0 0 12 16 merge_repeat chromOut simple
chr9 66920567 T G 999 11 11 11 11 11 11 11 11 24 0 0 15 11 0 0 17 7 0 0 28 9 0 0 26 13 0 0 18 9 0 0 27 10 0 0 20 6 0 0 26 3 merge_repeat trfMask chromOut simple
chr9 66920572 T G 999 11 11 11 11 11 11 11 11 26 0 0 16 10 0 0 19 7 0 0 29 10 0 0 27 13 0 0 18 9 0 0 27 10 0 0 21 6 0 0 30 3 merge_repeat trfMask chromOut simple
chr9 67228037 G T 999 11 11 11 11 11 11 11 11 28 0 0 16 18 0 0 14 22 0 0 12 16 0 0 22 14 0 0 16 25 0 0 14 18 1 0 16 23 0 0 20 16 merge_repeat trfMask chromOut simple
chr9 67243648 T G 999 11 11 11 11 11 11 11 11 49 1 0 24 32 0 0 40 29 0 0 24 32 0 0 32 29 0 0 33 35 0 0 30 26 0 0 26 28 0 0 24 25 merge_repeat chromOut
chr9 68872520 T A 999 11 11 11 11 11 11 11 11 24 0 0 16 21 0 0 13 18 0 0 13 17 0 0 26 25 0 0 15 23 0 0 19 22 0 0 13 17 0 0 8 16 merge_repeat trfMask chromOut simple
chr9 69078439 G A 999 11 11 11 11 11 11 11 11 44 0 0 24 20 0 0 35 33 0 0 33 29 0 0 32 27 0 0 19 39 0 0 42 28 0 0 29 27 0 0 28 32 merge_repeat chromOut
chr9 69078461 A T 999 11 11 11 11 11 11 11 11 45 0 0 27 18 0 0 38 33 0 0 28 28 0 0 33 33 0 0 23 40 0 0 41 30 0 0 31 32 0 0 29 36 merge_repeat chromOut
chr9 69119837 G C 999 11 11 11 11 11 11 11 11 46 0 0 27 34 0 0 23 28 0 0 24 30 0 0 17 38 0 0 27 31 0 0 29 35 0 0 14 32 0 0 24 35 @
chr9 69119949 G T 999 11 11 11 11 11 11 11 11 40 0 0 20 23 0 0 19 34 0 0 13 27 0 0 20 31 0 0 33 32 0 0 32 29 0 0 22 25 0 0 24 29 @
chr9 69153081 C T 999 11 11 11 11 11 11 11 11 43 0 0 32 25 0 0 26 28 0 0 32 37 0 0 28 35 0 0 34 41 0 1 29 38 0 0 33 38 0 0 20 23 @
chr9 69861320 G T 999 11 11 11 11 11 11 11 11 41 0 0 21 25 0 0 22 30 0 0 21 40 0 0 18 33 0 0 22 33 0 0 15 36 0 0 15 30 0 0 15 26 merge_repeat trfMask chromOut simple
chr9 70250646 T G 999 11 11 11 11 11 11 11 11 35 0 0 22 17 0 0 25 25 0 0 28 13 0 0 40 22 0 0 30 21 0 0 28 19 0 0 25 20 0 0 19 16 @
chr9 70948809 G A 999 11 11 11 11 11 11 11 11 43 0 0 19 27 0 0 17 26 0 0 27 32 0 0 33 30 0 0 20 27 0 0 17 33 0 0 25 25 0 0 23 50 merge_repeat chromOut
chr9 71569751 G C 999 11 11 11 11 11 11 11 11 44 0 0 32 28 0 0 34 23 0 0 32 35 0 0 21 24 0 0 28 27 0 0 26 22 0 0 26 18 0 0 33 25 merge_repeat chromOut
chr9 71569767 T C 999 11 11 11 11 11 11 11 11 45 0 0 36 26 0 0 36 24 0 0 31 31 0 0 22 24 0 0 28 26 0 0 29 20 0 0 26 19 0 0 33 24 merge_repeat chromOut
chr9 71569849 C T 999 11 11 11 11 11 11 11 11 23 0 0 23 10 0 0 22 7 0 0 17 15 0 0 17 11 0 0 20 19 0 0 31 12 0 0 13 10 0 0 22 10 @
chr9 72033218 G A 999 11 11 11 11 11 11 11 11 60 0 0 37 30 0 0 37 31 0 0 47 28 0 1 35 24 0 0 43 26 0 1 45 35 0 2 48 29 0 1 36 23 merge_repeat chromOut
chr9 72932019 A T 999 11 11 11 11 11 11 11 11 44 0 0 29 15 0 0 32 19 0 0 34 22 0 0 33 26 0 0 31 23 0 0 30 20 0 0 32 21 0 0 22 25 merge_repeat chromOut
chr9 73644979 G C 999 11 11 11 11 11 11 11 11 46 0 0 21 29 0 0 22 24 0 0 22 29 0 0 26 29 0 0 32 34 0 0 20 34 0 0 23 39 0 0 24 37 merge_repeat chromOut
chr9 76019231 G T 999 11 11 11 11 11 11 11 11 23 0 0 3 20 0 0 4 24 0 0 4 19 0 0 5 19 0 0 3 27 0 0 6 29 0 0 5 21 0 0 4 22 merge_repeat chromOut nested
chr9 77487078 C G 999 11 11 11 11 11 11 11 11 30 0 0 14 16 0 0 27 22 0 0 21 24 0 0 33 24 0 0 26 20 0 0 28 15 0 0 32 21 0 0 24 29 @
chr9 77487197 C G 999 11 11 11 11 11 11 11 11 39 0 0 26 27 0 0 19 33 0 0 14 25 0 0 30 30 0 0 22 37 0 0 25 28 0 0 23 25 0 0 16 34 @
chr9 77487199 A T 999 11 11 11 11 11 11 11 11 39 0 0 26 27 0 0 19 33 0 0 14 25 0 0 30 29 0 0 22 38 0 0 25 27 0 0 23 25 0 0 16 34 @
chr9 77488638 C G 999 11 11 11 11 11 11 11 11 39 0 0 21 22 0 0 20 19 0 0 26 15 0 0 27 26 0 0 19 26 0 0 20 25 0 0 23 21 0 0 34 27 @
chr9 77491093 T C 999 11 11 11 11 11 11 11 11 41 0 0 31 20 0 0 45 18 0 0 29 21 0 0 49 32 0 0 40 15 1 0 29 25 0 0 28 13 0 0 43 20 merge_repeat chromOut
chr9 78270988 T C 999 11 11 11 11 11 11 11 11 23 0 0 17 15 0 0 18 11 0 0 15 15 0 0 14 12 0 0 10 13 0 0 12 11 0 0 16 10 0 0 23 9 merge_repeat segmentDup
chr9 78815164 A C 999 11 11 11 11 11 11 11 11 52 0 0 34 35 0 0 25 34 0 0 29 24 0 1 33 33 0 0 34 35 0 0 30 25 1 0 20 31 0 1 35 22 merge_repeat trfMask chromOut simple
chr9 79743939 T A 999 11 11 11 11 11 11 11 11 50 0 0 20 50 0 0 43 47 0 0 28 55 0 0 34 46 0 0 36 36 0 0 19 32 0 0 35 51 0 0 20 30 @
chr9 80436695 T G 999 11 11 11 11 11 11 11 11 47 0 0 20 38 0 0 27 27 0 0 25 25 0 0 28 43 0 0 24 27 0 0 23 30 0 0 24 23 0 0 33 37 @
chr9 81387736 A G 999 11 11 11 11 11 11 11 11 48 0 0 23 27 0 0 29 26 0 0 24 31 0 0 33 36 0 0 27 30 0 0 33 34 0 0 29 19 0 0 48 37 @
chr9 82054269 A G 999 11 11 11 11 11 11 11 11 33 0 0 16 33 0 0 11 35 0 0 9 30 0 0 16 33 0 0 14 31 0 0 22 38 0 0 10 23 0 0 12 26 @
chr9 88380425 G A 999 11 11 11 11 11 11 11 11 33 0 0 24 11 0 0 24 15 0 0 27 15 0 0 22 11 0 0 33 17 0 0 26 13 0 0 20 16 0 0 19 14 @
chr9 88380426 G A 999 11 11 11 11 11 11 11 11 33 0 0 24 11 0 0 24 16 0 0 27 15 0 0 22 11 0 0 33 17 0 0 26 13 0 0 20 16 0 0 19 14 @
chr9 90118396 T C 999 11 11 11 11 11 11 11 11 54 0 0 31 31 0 0 34 26 0 0 39 27 0 0 41 16 0 0 43 17 0 0 46 20 0 0 38 23 0 0 36 18 merge_repeat chromOut nested
chr9 90319104 A G 999 11 11 11 11 11 11 11 11 41 0 0 24 17 0 0 28 32 0 0 29 27 0 0 34 29 0 0 36 19 0 0 27 27 0 0 34 19 0 0 15 33 merge_repeat chromOut
chr9 90319958 T C 999 11 11 11 11 11 11 11 11 42 0 0 38 28 0 0 37 32 1 0 33 27 0 0 35 27 0 0 24 29 0 0 19 23 0 0 36 39 0 0 26 32 merge_repeat chromOut
chr9 90319993 T C 999 11 11 11 11 11 11 11 11 50 0 0 37 29 0 0 38 37 0 0 38 26 0 0 33 26 0 0 34 31 0 0 22 28 0 0 38 40 0 0 25 31 merge_repeat chromOut
chr9 90348430 A G 999 11 11 11 11 11 11 11 11 43 0 0 26 28 0 0 29 28 0 0 32 31 0 1 34 30 0 0 22 21 0 0 27 20 0 0 25 35 0 0 31 27 merge_repeat chromOut nested
chr9 90363665 T C 999 11 11 11 11 11 11 11 11 37 0 0 25 28 0 0 29 18 0 0 24 27 0 0 30 21 0 0 29 28 0 0 27 25 0 0 33 19 0 0 19 18 merge_repeat chromOut nested
chr9 90372350 T C 999 11 11 11 11 11 11 11 11 54 0 0 31 33 0 0 28 41 0 0 28 32 0 0 42 41 0 0 39 28 0 0 26 37 0 0 26 28 0 0 21 33 merge_repeat chromOut
chr9 92173520 T A 999 11 11 11 11 11 11 11 11 41 0 0 23 28 0 0 20 33 0 0 29 42 0 0 28 24 0 0 26 30 0 0 18 23 0 0 28 31 0 0 18 32 merge_repeat chromOut
chr9 92173521 A C 999 11 11 11 11 11 11 11 11 41 0 0 22 28 0 0 20 33 0 0 30 42 0 0 28 24 0 0 26 30 0 0 18 23 0 0 28 31 0 0 18 32 merge_repeat chromOut
chr9 92966428 C G 999 11 11 11 11 11 11 11 11 51 0 0 32 19 0 0 41 33 0 0 42 24 0 0 44 29 0 0 35 27 0 0 29 25 0 0 42 24 0 0 37 22 merge_repeat chromOut nested
chr9 92966456 T A 999 11 11 11 11 11 11 11 11 50 0 0 35 26 0 0 37 28 0 0 41 27 0 0 40 28 0 0 31 27 0 0 29 22 0 0 41 19 0 0 31 19 merge_repeat chromOut nested
chr9 92966506 G T 999 11 11 11 11 11 11 11 11 56 0 0 32 36 0 0 35 27 0 0 38 33 0 0 42 38 0 0 35 25 0 0 33 32 0 0 41 28 0 0 25 31 merge_repeat chromOut nested
chr9 92966674 C G 999 11 11 11 11 11 11 11 11 42 0 0 26 16 0 0 27 26 0 0 27 37 0 0 15 34 0 0 21 28 0 0 26 21 0 0 23 41 0 0 33 29 @
chr9 92966697 A T 999 11 11 11 11 11 11 11 11 41 0 0 27 14 0 0 30 22 0 0 28 35 0 0 19 28 0 0 18 28 0 0 23 24 0 0 23 36 0 0 27 29 @
chr9 93621662 C A 999 11 11 11 11 11 11 11 11 39 0 0 32 23 0 0 27 23 0 0 19 25 1 0 27 18 0 0 23 25 0 0 18 21 0 0 33 17 0 0 32 21 merge_repeat trfMask chromOut simple
chr9 93770203 C G 999 11 11 11 11 11 11 11 11 27 0 0 11 23 0 0 18 17 0 0 15 22 0 0 15 12 0 0 21 14 0 0 24 18 0 0 19 21 0 0 17 15 merge_repeat chromOut
chr9 96373620 C T 999 11 11 11 11 11 11 11 11 22 0 0 8 17 0 0 2 28 0 0 6 16 0 0 4 33 0 1 7 19 0 0 7 25 0 0 7 24 0 0 7 20 merge_repeat chromOut
chr9 100365618 T G 999 11 11 11 11 11 11 11 11 34 0 0 41 8 0 0 41 9 0 0 44 12 0 0 32 11 0 0 35 15 0 0 39 8 0 0 32 5 0 0 28 6 @
chr9 100365620 T G 999 11 11 11 11 11 11 11 11 34 0 0 41 8 0 0 41 9 0 0 44 12 0 0 32 11 0 0 35 15 0 0 39 8 0 0 32 5 0 0 28 6 @
chr9 100365621 T C 999 11 11 11 11 11 11 11 11 34 0 0 41 8 0 0 41 9 0 0 44 12 0 0 32 11 0 0 35 15 0 0 39 8 0 0 32 5 0 0 28 6 @
chr9 100365622 T A 999 11 11 11 11 11 11 11 11 34 0 0 41 8 0 0 41 9 0 0 44 12 0 0 32 10 0 0 35 15 0 0 39 8 0 0 32 5 0 0 28 6 @
chr9 100365624 C A 999 11 11 11 11 11 11 11 11 34 0 0 41 8 0 0 41 9 0 0 44 12 0 0 32 10 0 0 35 15 0 0 39 7 0 0 32 5 0 0 28 6 @
chr9 100365630 C A 999 11 11 11 11 11 11 11 11 42 0 0 44 10 0 0 43 16 0 0 47 14 0 0 37 14 0 0 43 17 0 0 44 11 0 0 34 9 0 0 34 8 @
chr9 100365648 G C 999 11 11 11 11 11 11 11 11 39 0 0 39 9 0 0 35 14 0 0 38 13 0 0 27 15 0 0 43 19 0 0 39 13 0 0 28 11 0 0 32 7 merge_repeat chromOut
chr9 100365649 G T 999 11 11 11 11 11 11 11 11 39 0 0 39 9 0 0 35 15 0 0 38 13 0 0 27 15 0 0 43 19 0 0 39 13 0 0 28 11 0 0 33 7 merge_repeat chromOut
chr9 100365658 G T 999 11 11 11 11 11 11 11 11 39 0 0 39 9 0 0 35 15 0 0 38 13 0 0 27 14 0 0 43 19 0 0 39 13 1 0 28 11 0 0 32 7 merge_repeat chromOut
chr9 101288346 A T 999 11 11 11 11 11 11 11 11 62 0 0 39 26 0 0 34 29 0 0 34 39 0 0 49 44 0 0 33 31 0 0 32 37 0 0 35 27 0 0 38 32 merge_repeat trfMask chromOut simple
chr9 101353291 A T 999 11 11 11 11 11 11 11 11 24 0 0 13 11 0 0 15 9 0 0 13 11 0 0 14 16 0 0 22 19 0 0 14 20 0 0 7 17 0 0 20 9 merge_repeat trfMask chromOut simple nested
chr9 101489753 T C 999 11 11 11 11 11 11 11 11 23 0 0 9 14 0 0 8 16 0 0 12 24 0 0 12 21 0 0 8 25 0 0 12 17 0 0 10 23 0 0 12 19 @
chr9 101489784 T G 999 11 11 11 11 11 11 11 11 23 0 0 11 18 0 0 8 16 0 0 11 21 0 0 13 20 0 0 7 26 0 0 10 13 0 0 10 25 0 0 10 19 @
chr9 101489787 A G 999 11 11 11 11 11 11 11 11 23 0 0 11 18 0 0 8 16 0 0 11 21 0 0 13 20 0 0 7 27 0 0 10 13 0 0 10 26 0 0 10 20 @
chr9 101489803 T A 999 11 11 11 11 11 11 11 11 20 0 0 13 24 0 0 6 18 0 0 9 21 0 0 15 20 0 0 11 27 0 0 8 12 0 0 13 28 0 0 11 25 @
chr9 102235649 T C 999 11 11 11 11 11 11 11 11 51 0 0 22 35 0 0 33 36 0 0 21 40 0 0 32 33 0 0 25 35 0 0 25 44 0 0 25 26 0 0 26 30 @
chr9 103965085 A C 999 11 11 11 11 11 11 11 11 30 0 0 6 34 0 0 3 27 0 0 9 28 0 0 15 36 0 0 9 28 0 0 8 24 0 0 12 28 0 0 13 23 merge_repeat nested
chr9 104073753 T C 999 11 11 11 11 11 11 11 11 22 0 0 17 5 0 0 19 19 0 0 11 14 0 0 25 19 0 0 12 23 0 0 15 12 0 0 17 17 0 0 15 13 @
chr9 104977011 A C 999 11 11 11 11 11 11 11 11 28 0 0 14 25 0 0 11 22 0 0 14 22 0 0 22 23 0 0 22 32 0 0 8 20 0 0 9 24 0 0 12 25 merge_repeat chromOut
chr9 105175097 G A 999 11 11 11 11 11 11 11 11 35 0 0 22 22 0 0 17 26 0 0 23 23 0 0 20 31 0 0 32 15 0 0 18 17 0 0 19 18 0 0 19 16 merge_repeat chromOut
chr9 105200290 G A 999 11 11 11 11 11 11 11 11 52 0 0 33 20 0 0 42 23 0 0 39 22 0 0 43 32 0 0 45 32 0 0 34 27 0 0 27 25 0 0 31 31 @
chr9 105222336 T A 999 11 11 11 11 11 11 11 11 35 0 0 18 18 0 0 22 22 0 0 20 22 0 0 29 22 0 0 30 19 0 0 17 18 0 0 27 24 0 0 25 14 merge_repeat chromOut
chr9 105222504 G A 999 11 11 11 11 11 11 11 11 44 0 0 27 23 0 0 25 19 0 0 25 23 0 0 23 22 0 0 25 21 0 0 30 17 0 0 29 17 0 0 31 17 merge_repeat chromOut
chr9 105222516 G A 999 11 11 11 11 11 11 11 11 40 0 0 25 20 0 0 24 16 0 0 29 24 0 0 27 22 0 0 32 25 0 0 34 18 0 0 31 20 0 0 31 20 merge_repeat chromOut
chr9 105222529 T C 999 11 11 11 11 11 11 11 11 42 0 0 27 19 0 0 25 17 0 0 28 23 0 0 31 21 0 0 32 23 0 0 32 19 0 0 30 20 0 0 30 21 merge_repeat chromOut
chr9 105222638 C T 999 11 11 11 11 11 11 11 11 47 0 0 30 19 0 0 27 22 0 0 25 22 0 0 30 30 0 0 30 31 0 0 29 25 0 0 26 26 0 0 18 30 merge_repeat chromOut
chr9 105409432 G T 999 11 11 11 11 11 11 11 11 23 1 0 16 25 0 0 22 28 0 0 13 22 0 0 25 20 0 0 12 23 0 0 9 14 0 0 13 15 0 0 13 17 @
chr9 105437666 G T 999 11 11 11 11 11 11 11 11 26 0 0 1 33 0 0 3 37 0 0 6 26 0 0 3 33 0 0 2 26 0 0 4 32 0 0 3 30 0 0 2 24 @
chr9 105437667 T C 999 11 11 11 11 11 11 11 11 26 0 0 1 32 0 0 3 39 0 0 6 26 0 0 3 33 0 0 2 26 0 0 5 32 0 0 3 31 0 0 2 24 @
chr9 105565766 T C 999 11 11 11 11 11 11 11 11 28 0 0 16 18 0 0 22 6 0 0 25 17 0 0 28 18 0 0 32 25 0 0 29 18 0 0 32 20 0 0 28 12 merge_repeat chromOut nested
chr9 105565813 T C 999 11 11 11 11 11 11 11 11 30 0 0 21 20 0 0 19 11 0 0 27 19 0 0 27 19 0 0 31 26 0 0 32 17 0 0 31 19 0 0 24 13 merge_repeat chromOut nested
chr9 105565851 C A 999 11 11 11 11 11 11 11 11 28 0 1 23 7 0 0 22 6 0 0 25 12 0 0 26 5 0 0 26 12 0 0 27 8 0 0 32 9 0 1 24 6 merge_repeat chromOut nested
chr9 105565854 C A 999 11 11 11 11 11 11 11 11 29 1 0 22 8 0 0 21 8 0 0 25 15 0 0 26 5 0 0 26 14 0 0 28 11 1 0 31 6 0 0 24 7 merge_repeat chromOut nested
chr9 105985762 C A 999 11 11 11 11 11 11 11 11 26 0 0 20 23 0 0 18 17 0 0 17 14 0 0 18 22 0 0 27 13 0 0 19 27 0 0 10 16 0 0 18 21 @
chr9 107101217 A C 999 11 11 11 11 11 11 11 11 54 0 0 29 25 0 0 29 25 0 0 35 25 0 0 33 35 0 0 32 40 0 0 36 33 0 0 32 23 0 0 26 33 merge_repeat chromOut nested
chr9 108073223 T G 999 11 11 11 11 11 11 11 11 28 0 0 13 16 0 0 13 17 0 0 15 14 0 0 19 22 0 0 26 15 0 0 14 17 0 0 13 16 0 0 12 16 merge_repeat trfMask chromOut simple
chr9 110189634 G A 999 11 11 11 11 11 11 11 11 44 0 0 36 38 0 0 27 33 0 0 21 40 0 0 26 28 0 0 33 32 0 0 23 26 0 0 18 29 0 0 23 21 merge_repeat chromOut
chr9 111112307 C A 999 11 11 11 11 11 11 11 11 26 0 0 17 12 0 0 14 12 0 0 25 14 0 0 18 14 0 0 23 24 0 0 13 13 0 0 18 11 0 0 12 14 @
chr9 112266552 T C 999 11 11 11 11 11 11 11 11 49 0 0 41 37 0 0 31 29 0 0 28 36 0 0 46 33 0 0 41 30 0 0 42 25 0 0 42 25 0 0 33 16 @
chr9 112854596 A T 999 11 11 11 11 11 11 11 11 29 0 0 10 19 0 0 13 22 0 0 20 28 0 0 23 23 0 0 20 28 0 0 16 15 0 0 20 22 0 0 14 25 @
chr9 112854612 C T 999 11 11 11 11 11 11 11 11 29 0 0 12 21 0 0 16 21 0 0 17 26 0 0 20 24 0 0 22 29 0 0 14 15 0 0 25 23 0 0 18 25 @
chr9 112854622 C T 999 11 11 11 11 11 11 11 11 29 0 0 16 22 0 0 16 19 0 0 19 25 0 0 22 26 0 0 25 31 0 0 15 14 0 0 26 24 0 0 20 26 @
chr9 112854692 C T 999 11 11 11 11 11 11 11 11 37 0 0 31 21 0 0 28 16 0 0 23 17 0 0 33 24 0 0 32 28 0 0 18 19 0 0 37 17 0 0 27 16 merge_repeat trfMask chromOut simple
chr9 112854746 C T 999 11 11 11 11 11 11 11 11 31 0 0 31 14 0 0 28 13 0 0 21 10 0 0 31 19 0 0 25 20 0 0 22 16 0 0 30 15 0 0 29 12 merge_repeat chromOut simple
chr9 112854765 T A 999 11 11 11 11 11 11 11 11 27 0 0 24 6 0 0 28 11 0 0 18 9 0 2 26 15 0 0 14 14 0 0 18 12 0 0 28 13 0 0 25 8 merge_repeat chromOut simple
chr9 112854766 G A 999 11 11 11 11 11 11 11 11 31 0 0 24 8 0 0 27 13 0 0 18 15 0 0 26 22 0 0 14 17 0 0 18 16 0 0 28 15 0 0 25 8 merge_repeat chromOut simple
chr9 112854778 C T 999 11 11 11 11 11 11 11 11 31 0 0 28 8 0 0 32 13 0 0 17 15 0 0 30 27 0 0 15 16 0 0 23 17 0 0 28 18 0 0 25 10 merge_repeat chromOut simple
chr9 113149969 G A 999 11 11 11 11 11 11 11 11 37 0 0 19 18 0 0 27 17 0 0 26 29 0 0 29 19 0 0 17 24 0 0 34 19 0 0 20 20 0 0 19 22 merge_repeat chromOut nested
chr9 113149972 A T 999 11 11 11 11 11 11 11 11 37 0 0 19 18 0 0 27 16 0 0 26 28 0 0 29 19 0 0 17 24 0 0 34 19 0 0 20 20 0 0 19 22 merge_repeat chromOut nested
chr9 113150009 C T 999 11 11 11 11 11 11 11 11 37 0 0 22 15 0 0 29 23 0 0 28 31 0 0 35 21 0 0 33 22 0 0 28 21 0 0 18 19 0 0 20 23 merge_repeat chromOut nested
chr9 113260609 G C 999 11 11 11 11 11 11 11 11 22 0 0 12 10 0 0 15 24 0 0 18 24 0 0 28 14 0 0 18 24 0 0 15 20 0 0 10 15 0 0 17 20 merge_repeat trfMask chromOut simple
chr9 113260610 G A 999 11 11 11 11 11 11 11 11 24 0 0 12 12 0 0 15 26 0 0 18 27 0 1 29 14 0 0 18 24 0 0 15 23 0 0 11 18 0 0 17 20 merge_repeat trfMask chromOut simple
chr9 113495967 C T 999 11 11 11 11 11 11 11 11 53 0 0 27 35 0 0 25 49 0 0 31 37 0 0 31 42 0 0 27 39 0 0 34 35 0 0 18 35 0 0 33 29 @
chr9 115201230 C T 999 11 11 11 11 11 11 11 11 32 0 0 19 33 0 0 29 29 1 0 27 34 0 0 24 39 0 0 20 22 0 0 28 20 0 0 22 31 0 0 19 13 @
chr9 115938400 A T 999 11 11 11 11 11 11 11 11 27 1 0 19 25 0 0 18 24 0 1 23 20 0 0 23 35 0 0 20 37 0 0 15 12 0 0 17 26 0 0 21 22 merge_repeat chromOut simple
chr9 118101721 T A 999 11 11 11 11 11 11 11 11 48 0 0 28 29 0 0 35 24 0 0 29 35 0 0 30 22 0 0 29 19 0 0 26 37 0 0 24 33 0 0 30 28 @
chr9 118752139 A T 999 11 11 11 11 11 11 11 11 52 0 0 30 29 0 0 23 46 0 0 21 41 0 0 29 41 0 0 33 36 0 0 24 28 0 0 25 34 0 0 18 37 @
chr9 119035307 G C 999 11 11 11 11 11 11 11 11 41 0 0 33 17 0 0 36 18 0 0 22 29 0 0 31 27 0 0 37 22 0 0 24 17 0 0 22 21 0 0 32 19 @
chr9 119145419 G C 999 11 11 11 11 11 11 11 11 35 0 0 23 23 0 0 16 22 0 0 13 22 0 0 24 21 0 0 30 19 0 0 22 20 0 0 23 15 0 0 26 21 @
chr9 119145459 T C 999 11 11 11 11 11 11 11 11 33 0 0 21 20 0 0 22 29 0 0 15 28 0 0 21 18 0 0 27 23 0 0 28 21 0 0 24 20 0 0 20 13 merge_repeat simple
chr9 119145479 T G 999 11 11 11 11 11 11 11 11 37 0 0 23 33 0 0 26 27 0 0 16 31 0 0 24 23 0 0 30 30 0 0 30 24 0 0 22 24 0 0 21 16 merge_repeat simple
chr9 119145562 C T 999 11 11 11 11 11 11 11 11 30 0 0 24 26 0 0 23 28 0 0 12 18 0 0 26 20 0 0 31 37 0 0 33 25 0 0 20 24 0 0 20 22 @
chr9 119169402 T C 999 11 11 11 11 11 11 11 11 49 0 0 31 20 0 0 31 19 0 0 34 27 0 0 33 43 0 0 36 34 0 0 26 29 0 0 36 34 0 0 27 22 @
chr9 119184147 C A 999 11 11 11 11 11 11 11 11 28 0 0 20 8 0 0 22 11 0 0 22 7 0 0 31 12 0 0 33 10 0 0 25 11 0 0 21 12 0 1 22 9 @
chr9 120016907 T G 999 11 11 11 11 11 11 11 11 54 0 0 35 26 0 0 29 29 0 0 33 25 0 0 34 24 0 0 29 28 0 0 28 26 0 0 31 28 0 0 26 32 @
chr9 120218002 G T 999 11 11 11 11 11 11 11 11 45 0 0 23 23 0 0 27 30 0 0 26 39 0 0 21 32 0 0 28 40 0 0 24 23 0 0 18 27 0 0 23 35 @
chr9 120218011 C T 999 11 11 11 11 11 11 11 11 36 0 0 20 22 0 0 24 22 0 0 24 30 0 0 19 22 0 0 27 31 0 0 22 22 0 0 15 21 0 0 20 31 @
chr9 120218013 G T 999 11 11 11 11 11 11 11 11 36 0 0 22 22 0 0 24 22 0 0 24 30 0 0 19 22 0 0 26 31 0 0 22 22 0 0 15 21 0 0 18 31 @
chr9 120218014 T G 999 11 11 11 11 11 11 11 11 36 0 0 22 22 0 0 24 22 0 0 24 30 0 0 19 22 0 0 26 31 0 0 22 22 0 0 15 21 0 0 19 31 @
chr9 120469390 A G 999 11 11 11 11 11 11 11 11 33 0 0 6 32 0 0 4 41 0 0 11 25 0 0 12 27 0 0 10 26 0 0 9 41 0 0 4 29 0 0 6 35 merge_repeat nested
chr9 120469391 A G 999 11 11 11 11 11 11 11 11 33 0 0 6 32 0 1 4 40 0 0 11 25 0 0 12 27 0 0 10 26 0 0 9 41 0 0 4 29 0 0 6 35 merge_repeat nested
chr9 120479463 A G 999 11 11 11 11 11 11 11 11 20 0 0 18 6 0 0 15 5 0 0 12 8 0 0 15 8 0 0 23 4 0 0 15 7 0 0 17 5 0 0 16 7 merge_repeat chromOut nested
chr9 120479638 A G 999 11 11 11 11 11 11 11 11 20 0 0 15 5 0 0 19 10 0 0 13 15 0 0 25 17 0 0 25 5 0 0 17 12 0 0 19 10 0 0 16 7 merge_repeat chromOut
chr9 120517999 G C 999 11 11 11 11 11 11 11 11 40 0 0 31 28 0 0 18 37 0 0 23 28 0 0 22 30 0 0 25 25 0 0 19 21 0 0 24 24 0 0 16 28 @
chr9 120518023 G A 999 11 11 11 11 11 11 11 11 39 0 0 28 24 0 0 15 40 0 0 16 27 0 0 27 28 0 0 24 29 0 0 18 21 0 0 26 22 0 0 16 26 merge_repeat chromOut
chr9 120518063 A T 999 11 11 11 11 11 11 11 11 34 0 0 21 23 0 0 20 39 0 0 18 26 0 0 23 29 0 0 21 31 0 0 17 24 0 0 20 14 0 0 16 24 @
chr9 120518100 A G 999 11 11 11 11 11 11 11 11 35 0 0 21 21 0 0 21 31 0 0 20 33 0 0 29 27 0 0 25 30 0 0 23 23 0 0 19 16 0 0 17 22 @
chr9 120518143 A G 999 11 11 11 11 11 11 11 11 43 0 0 20 23 0 0 25 33 0 0 23 35 0 0 31 30 0 0 22 32 0 0 27 28 0 0 23 21 0 0 21 22 @
chr9 120535425 C G 999 11 11 11 11 11 11 11 11 43 0 0 33 27 0 0 28 16 0 0 21 22 0 0 29 17 0 0 28 33 0 0 20 23 0 0 25 24 0 0 31 18 merge_repeat chromOut nested
chr9 121464231 T C 999 11 11 11 11 11 11 11 11 26 0 0 32 7 0 0 13 13 0 0 21 9 0 0 19 17 0 0 21 18 0 0 20 8 0 0 17 14 0 0 22 16 @
chr9 122313308 G T 999 11 11 11 11 11 11 11 11 32 0 0 23 16 0 0 27 27 0 0 18 14 0 0 26 29 0 0 27 13 0 0 23 21 0 0 22 15 0 0 24 21 merge_repeat chromOut simple
chr9 122313309 A G 999 11 11 11 11 11 11 11 11 32 0 0 23 16 0 0 27 26 0 0 18 14 0 0 26 29 0 0 27 13 0 0 23 21 0 0 22 15 0 0 25 21 merge_repeat chromOut simple
chr9 122388252 C G 999 11 11 11 11 11 11 11 11 47 0 0 32 31 0 0 35 35 0 0 36 26 0 0 40 33 0 0 39 27 0 0 32 28 0 0 26 21 0 0 35 20 merge_repeat chromOut
chr9 122388253 A G 999 11 11 11 11 11 11 11 11 47 0 0 32 31 0 0 35 35 0 0 36 26 0 0 40 33 0 0 39 27 0 0 32 28 0 0 26 21 0 0 35 20 merge_repeat chromOut
chr9 122606303 A C 999 11 11 11 11 11 11 11 11 30 0 0 22 18 0 0 21 18 0 0 13 17 0 0 23 22 0 0 20 24 0 0 17 14 0 0 17 15 0 0 20 18 merge_repeat trfMask chromOut simple
chr9 122606315 A T 999 11 11 11 11 11 11 11 11 24 0 0 22 13 0 0 15 16 0 0 10 14 0 0 21 22 0 0 16 22 0 0 17 14 0 0 16 12 0 0 17 11 merge_repeat trfMask chromOut simple
chr9 123476422 A G 999 11 11 11 11 11 11 11 11 55 0 0 26 36 0 0 45 36 0 0 38 36 0 0 35 36 0 0 26 32 0 0 28 27 0 0 22 33 0 0 29 41 merge_repeat chromOut nested
chr9 124158023 A C 999 11 11 11 11 11 11 11 11 55 0 0 34 39 0 0 52 36 0 0 37 29 0 0 39 36 0 0 44 42 0 0 29 26 0 0 41 36 0 0 37 26 merge_repeat chromOut nested
chr9 124257869 T C 999 11 11 11 11 11 11 11 11 167 0 3 7 188 0 0 13 228 1 1 16 217 0 1 14 217 0 0 5 180 0 2 10 155 1 1 5 183 0 0 11 188 merge_repeat simple
chr9 124268590 A T 999 11 11 11 11 11 11 11 11 62 0 0 91 4 0 0 103 1 0 0 110 4 0 0 106 5 0 0 95 4 0 0 58 4 1 0 93 4 0 0 93 6 merge_repeat chromOut simple nested
chr9 124272747 A T 999 11 11 11 11 11 11 11 11 61 0 0 32 39 0 0 40 49 0 0 34 57 0 0 46 47 0 0 37 51 0 0 38 38 0 0 27 34 0 0 33 39 merge_repeat chromOut
chr9 124295159 T C 999 11 11 11 11 11 11 11 11 63 0 0 37 44 0 0 43 42 0 0 27 38 0 0 36 42 0 0 40 53 0 0 32 35 0 0 30 33 0 0 32 48 merge_repeat chromOut nested
chr9 124338425 A G 999 11 11 11 11 11 11 11 11 26 0 0 38 14 0 0 30 14 0 0 30 15 0 0 27 16 0 0 35 17 0 0 25 14 0 0 19 7 0 0 25 10 merge_repeat chromOut segmentDup
chr9 124338577 A G 999 11 11 11 11 11 11 11 11 58 0 0 42 38 0 0 36 42 0 0 26 48 0 0 41 38 0 0 28 47 0 0 26 34 0 0 32 30 0 0 22 36 merge_repeat chromOut segmentDup
chr9 124338856 T G 999 11 11 11 11 11 11 11 11 39 0 0 29 34 0 0 29 34 0 0 26 23 0 0 25 33 0 0 23 31 0 0 37 25 0 0 20 26 0 0 18 21 merge_repeat segmentDup
chr9 124338857 T A 999 11 11 11 11 11 11 11 11 39 0 0 29 34 0 0 28 34 0 0 27 23 0 0 25 33 0 0 23 31 0 0 37 25 0 0 20 26 0 0 18 21 merge_repeat segmentDup
chr9 124338859 T G 999 11 11 11 11 11 11 11 11 39 0 0 29 34 0 0 29 34 0 0 27 23 0 0 25 33 0 0 23 31 0 0 37 25 0 0 20 26 0 0 18 21 merge_repeat segmentDup
chr9 124338861 T G 999 11 11 11 11 11 11 11 11 39 0 0 29 34 0 0 29 34 0 0 26 23 0 0 25 33 0 0 23 31 0 0 37 25 0 0 20 26 0 0 18 21 merge_repeat segmentDup
chr9 124338862 T C 999 11 11 11 11 11 11 11 11 39 0 0 29 34 0 0 29 34 0 0 27 23 0 0 25 33 0 0 23 31 0 0 37 25 0 0 20 26 0 0 18 21 merge_repeat segmentDup
chr9 124363725 C G 999 11 11 11 11 11 11 11 11 26 0 0 19 20 0 0 21 12 0 0 18 19 0 0 20 20 0 0 17 14 0 0 15 11 0 0 20 15 0 0 24 13 merge_repeat chromOut segmentDup
chr9 124368338 T A 999 11 11 11 11 11 11 11 11 28 0 0 35 3 0 0 29 8 0 0 37 6 0 0 29 6 0 0 26 2 0 0 37 5 0 0 33 2 0 0 33 5 merge_repeat chromOut
chr9 124383748 C A 999 11 11 11 11 11 11 11 11 34 0 0 22 22 0 0 20 33 0 0 27 28 0 0 26 23 0 0 25 38 0 0 14 26 0 0 22 28 0 0 11 23 merge_repeat chromOut
chr9 124389053 G C 999 11 11 11 11 11 11 11 11 50 0 0 32 32 0 0 30 23 0 0 21 34 0 0 27 23 0 0 26 35 0 0 29 26 0 0 31 27 0 0 37 25 merge_repeat chromOut