chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr5	4475618	G	T	999	11 11 11 11 11 11 11 11	28	0	0	11	19	0	0	13	21	0	0	12	16	0	0	10	22	0	0	14	19	1	0	7	20	0	0	12	17	0	0	10	27
chr5	4823788	G	T	999	11 11 11 11 11 11 11 11	37	0	0	29	10	0	0	33	24	0	0	25	20	0	0	37	27	0	0	24	20	0	0	37	19	0	0	27	10	0	0	35	14
chr5	5027941	C	G	999	11 11 11 11 11 11 11 11	42	0	0	41	30	0	0	34	33	0	0	22	20	0	0	46	44	0	0	37	26	0	0	33	28	0	0	27	22	0	0	24	24	merge_repeat		chromOut
chr5	6068571	A	C	999	11 11 11 11 11 11 11 11	32	0	0	17	21	0	0	21	27	0	0	21	25	0	0	16	44	0	0	14	34	0	0	20	20	0	0	18	24	0	0	15	17	merge_repeat	trfMask	chromOut	simple
chr5	6068575	A	C	999	11 11 11 11 11 11 11 11	31	0	0	17	22	0	0	21	29	0	0	21	26	0	0	17	45	0	0	15	34	0	0	21	20	0	0	17	24	0	0	15	16	merge_repeat	trfMask	chromOut	simple
chr5	6370379	A	C	999	11 11 11 11 11 11 11 11	34	0	0	13	26	0	0	16	18	0	0	17	24	0	0	19	18	0	0	17	18	0	0	16	18	0	0	22	17	0	0	17	17	merge_repeat		chromOut
chr5	6475096	A	T	999	11 11 11 11 11 11 11 11	34	0	0	19	15	0	0	23	24	0	0	20	29	0	0	23	29	1	0	26	34	0	0	26	28	0	0	19	18	0	0	22	26	merge_repeat		chromOut
chr5	6796556	A	G	999	11 11 11 11 11 11 11 11	58	0	0	51	32	0	0	30	41	0	0	40	34	1	0	28	29	0	0	35	42	0	0	37	28	0	0	39	27	0	0	40	34
chr5	7668857	A	G	999	11 11 11 11 11 11 11 11	56	0	1	36	26	0	0	31	31	0	0	34	33	0	0	32	32	1	0	33	28	0	0	33	33	0	0	27	29	0	0	39	38	merge_repeat		chromOut		nested
chr5	8161179	T	C	999	11 11 11 11 11 11 11 11	40	0	0	33	14	0	0	32	15	0	0	43	7	0	0	28	12	0	0	46	18	0	0	32	15	0	0	25	22	0	1	34	8
chr5	8317300	G	T	999	11 11 11 11 11 11 11 11	21	0	0	14	14	0	0	7	14	0	0	14	13	0	0	12	11	0	0	21	25	0	0	8	16	0	0	12	20	0	0	10	19	merge_repeat	trfMask	chromOut	simple
chr5	8979645	A	C	999	11 11 11 11 11 11 11 11	36	0	0	31	20	0	0	29	16	0	0	39	23	0	0	30	25	0	0	32	15	0	0	17	23	0	0	33	20	0	0	20	16	merge_repeat	trfMask	chromOut	simple
chr5	9144593	C	T	999	11 11 11 11 11 11 11 11	57	0	0	29	37	0	0	32	28	0	0	25	32	0	0	26	33	0	0	30	31	0	0	26	33	0	0	41	39	0	0	34	46	merge_repeat		chromOut		nested
chr5	10032960	T	A	999	11 11 11 11 11 11 11 11	47	0	0	32	42	0	0	27	20	0	0	40	40	0	0	33	31	0	0	45	35	0	0	35	25	0	0	26	30	0	0	34	39
chr5	10597258	C	T	999	11 11 11 11 11 11 11 11	54	0	0	44	26	0	0	35	30	0	0	37	29	0	0	42	28	0	0	35	30	0	0	31	32	0	0	37	17	0	0	26	28
chr5	12083904	T	A	999	11 11 11 11 11 11 11 11	57	0	0	36	31	0	0	40	37	0	0	32	34	0	0	41	34	0	0	35	40	0	0	39	32	0	0	28	29	0	0	37	27	merge_repeat		chromOut		nested
chr5	13525112	T	G	999	11 11 11 11 11 11 11 11	44	0	0	31	23	0	0	29	22	0	0	25	23	0	0	32	25	0	0	19	25	0	0	29	29	0	0	20	28	0	0	30	31
chr5	13570208	A	G	999	11 11 11 11 11 11 11 11	40	0	0	33	23	0	0	29	21	0	0	28	23	0	0	32	30	0	0	39	18	0	0	35	17	0	0	30	25	0	0	24	16
chr5	13976942	C	A	999	11 11 11 11 11 11 11 11	26	0	0	15	26	0	0	15	22	0	0	23	18	0	0	23	19	0	0	19	21	0	0	15	17	0	0	15	17	0	0	15	11	merge_repeat		chromOut
chr5	14601468	G	T	999	11 11 11 11 11 11 11 11	30	0	0	26	15	1	0	30	18	0	0	17	13	0	1	29	23	0	1	26	21	0	0	24	14	0	0	32	15	0	0	25	14	merge_repeat	trfMask	chromOut	simple
chr5	14915303	A	G	999	11 11 11 11 11 11 11 11	528	2	2	137	414	2	0	138	476	3	2	129	509	3	0	152	420	1	1	130	435	2	4	94	428	4	2	127	420	1	1	119	462	merge_repeat					segmentDup
chr5	14915687	T	C,A	999	12 12 12 12 12 12 12 12	93	2	7	43	102	3	4	34	89	1	3	27	74	1	4	38	94	1	4	16	83	2	3	26	62	5	2	32	78	2	2	25	69	merge_repeat					segmentDup
chr5	14917921	C	T	691	11 11 11 11 11 11 11 11	225	7	0	206	17	5	0	204	16	5	1	221	18	7	0	253	16	10	0	285	11	8	0	240	15	2	0	210	20	6	0	200	25	merge_repeat		chromOut		nested	segmentDup
chr5	14919363	T	C	168	11 11 11 11 11 11 11 11	83	2	2	49	50	1	3	47	65	0	1	37	51	1	4	53	62	0	0	41	61	0	0	42	41	0	3	59	67	0	3	45	59	merge_repeat		chromOut		nested	segmentDup
chr5	14919382	C	T	158	11 11 11 11 11 11 11 11	59	0	0	36	27	0	1	40	35	0	1	36	34	0	2	47	32	0	0	41	32	0	1	38	20	1	0	49	46	0	0	36	36	merge_repeat		chromOut		nested	segmentDup
chr5	14929104	A	G	277	11 11 11 11 11 11 11 11	20	0	0	17	4	0	0	15	5	0	0	17	6	0	0	27	2	0	0	27	3	0	0	34	3	0	0	22	6	0	0	24	2	merge_repeat		chromOut		nested	segmentDup
chr5	14929562	G	A	438	11 11 11 11 11 11 11 11	81	0	2	4	108	0	2	16	93	0	1	5	95	0	0	5	116	0	0	3	92	0	1	5	75	0	1	5	89	0	1	10	121	merge_repeat		chromOut		nested	segmentDup
chr5	14935965	A	C	999	11 11 11 11 11 11 11 11	156	1	0	138	29	0	3	141	21	0	1	129	26	0	0	157	36	0	1	154	43	1	1	141	34	0	1	149	28	0	0	147	27	merge_repeat					segmentDup
chr5	14942932	T	C	394	11 11 11 11 11 11 11 11	57	0	0	50	21	0	0	39	18	1	0	45	29	0	0	53	24	0	0	47	22	0	0	42	22	2	0	61	20	0	0	52	35	merge_repeat		chromOut		nested	segmentDup
chr5	14960078	T	C	528	11 11 11 11 11 11 11 11	31	0	0	11	61	0	3	22	71	0	0	19	42	0	0	21	48	0	1	6	24	0	1	9	32	0	0	16	54	0	0	11	50	merge_repeat					segmentDup
chr5	14963141	G	C	999	11 11 11 11 11 11 11 11	157	0	1	160	107	0	1	154	107	0	1	82	105	1	1	96	110	0	1	75	94	0	0	79	78	0	0	120	96	0	0	118	90	merge_repeat					segmentDup
chr5	14972241	A	G	999	11 11 11 11 11 11 11 11	47	0	0	6	41	0	1	12	40	2	0	26	42	0	0	29	63	0	0	21	56	1	1	16	44	0	0	11	47	1	1	15	40	merge_repeat		chromOut		nested	segmentDup
chr5	14983344	T	C	999	11 11 11 11 11 11 11 11	103	0	0	82	51	0	0	61	50	0	0	69	40	0	0	54	58	0	0	62	51	0	1	49	53	0	0	71	44	0	0	61	43	merge_repeat		chromOut		nested	segmentDup
chr5	14983363	C	T	999	11 11 11 11 11 11 11 11	113	0	0	87	46	0	0	62	51	0	0	82	41	1	0	76	57	1	0	81	52	0	0	58	57	1	0	77	44	0	0	77	42	merge_repeat		chromOut		nested	segmentDup
chr5	14984623	G	A	999	11 11 11 11 11 11 11 11	87	0	0	54	51	1	0	69	52	0	0	66	46	0	0	59	42	0	0	53	45	0	2	55	30	0	0	57	47	0	0	62	55	merge_repeat		chromOut		nested	segmentDup
chr5	14985317	T	C	627	11 11 11 11 11 11 11 11	28	0	0	8	26	0	0	15	22	0	0	9	25	0	0	4	26	0	0	10	22	0	1	9	18	0	2	7	38	0	0	2	31	merge_repeat		chromOut			segmentDup
chr5	14985393	G	A	59	11 11 11 11 11 11 11 11	40	0	1	33	8	0	0	33	15	0	0	42	6	0	1	36	3	0	1	48	3	0	0	49	10	0	1	36	14	0	0	38	8	merge_repeat		chromOut			segmentDup
chr5	14987007	T	G	999	11 11 11 11 11 11 11 11	278	1	1	189	112	1	1	152	124	0	1	167	158	1	2	187	191	0	1	227	200	0	2	179	139	2	0	178	131	2	1	174	141	merge_repeat					segmentDup
chr5	14987394	T	A	999	11 11 11 11 11 11 11 11	115	1	1	14	130	0	0	14	116	0	0	15	136	0	1	15	165	0	1	19	157	0	0	13	102	0	0	20	143	0	0	18	114	merge_repeat					segmentDup
chr5	14987466	T	C	999	11 11 11 11 11 11 11 11	29	0	0	10	34	0	0	12	17	0	0	15	25	0	1	15	28	0	0	16	47	0	0	11	20	0	0	13	25	0	0	10	22	merge_repeat		chromOut			segmentDup
chr5	14987539	T	G	942	11 11 11 11 11 11 11 11	22	0	1	12	17	0	0	20	15	0	0	7	16	0	0	10	12	0	0	9	21	0	0	9	14	0	0	6	16	0	0	17	12	merge_repeat		chromOut			segmentDup
chr5	14988102	C	A	409	11 11 11 11 11 11 11 11	168	0	0	162	62	0	0	156	60	0	0	129	71	1	0	104	78	0	0	97	71	0	0	102	76	2	0	129	76	0	0	128	56	merge_repeat					segmentDup
chr5	14990372	C	G	497	11 11 11 11 11 11 11 11	103	3	3	47	89	5	1	38	76	1	3	30	103	3	2	26	105	0	2	31	129	1	4	13	85	2	3	32	103	3	1	38	90	merge_repeat					segmentDup
chr5	15007839	G	C	999	11 11 11 11 11 11 11 11	144	0	0	179	76	0	4	163	58	1	2	90	63	0	2	110	88	0	1	70	73	0	2	87	60	0	0	131	74	1	2	130	50	merge_repeat		chromOut			segmentDup
chr5	15035088	T	C	263	11 11 11 11 11 11 11 11	95	0	0	78	26	0	0	75	20	0	0	92	18	0	0	113	15	0	0	90	26	0	0	94	25	1	0	88	29	0	0	104	18	merge_repeat					segmentDup
chr5	15035097	G	C	90	11 11 11 11 11 11 11 11	94	1	0	78	25	0	0	69	25	1	0	91	18	0	0	108	16	0	0	87	24	0	0	90	26	2	0	87	28	0	0	104	18	merge_repeat					segmentDup
chr5	15038740	G	A	588	11 11 11 11 11 11 11 11	145	1	2	104	65	0	1	129	31	0	0	110	45	0	0	114	49	0	0	100	45	0	0	101	47	0	2	112	44	0	1	107	46	merge_repeat		chromOut		nested	segmentDup
chr5	15039206	T	C	800	11 11 11 11 11 11 11 11	122	2	2	8	138	4	1	10	127	2	1	3	124	1	4	3	134	1	0	4	117	1	1	6	132	3	0	6	140	1	2	8	138	merge_repeat		chromOut		nested	segmentDup
chr5	15039999	T	G	999	11 11 11 11 11 11 11 11	36	0	0	27	9	0	0	40	10	0	0	51	11	0	0	67	5	0	0	63	8	0	0	56	4	0	1	29	12	0	0	48	21	merge_repeat		chromOut			segmentDup
chr5	15041122	T	G	999	11 11 11 11 11 11 11 11	166	0	1	166	28	2	0	159	25	1	1	147	17	0	1	178	32	0	0	180	12	2	0	165	16	0	0	167	14	0	1	167	12	merge_repeat					segmentDup
chr5	15042215	C	A	999	11 11 11 11 11 11 11 11	131	0	0	49	99	0	0	67	99	0	0	65	87	1	0	44	101	0	0	55	85	0	0	40	91	0	0	50	82	0	0	48	91	merge_repeat					segmentDup
chr5	15054003	A	G	999	11 11 11 11 11 11 11 11	55	1	2	30	45	1	0	28	59	0	3	17	47	2	2	19	64	1	4	16	71	2	2	25	50	1	2	11	41	1	1	21	49	merge_repeat					segmentDup
chr5	15479107	A	G	255	11 11 11 11 11 11 11 11	120	1	1	42	103	2	1	49	113	3	1	23	131	1	1	30	126	3	2	14	120	2	0	16	110	2	0	22	96	0	0	28	103	merge_repeat		chromOut		nested	segmentDup
chr5	15510380	T	C	999	11 11 11 11 11 11 11 11	177	0	2	128	65	2	0	115	64	2	2	139	51	1	4	120	85	2	4	108	78	1	1	99	78	1	2	119	55	3	3	103	77	merge_repeat		chromOut			segmentDup
chr5	15572414	T	G	999	11 11 11 11 11 11 11 11	33	0	0	24	30	0	0	18	18	0	0	17	16	0	0	17	24	0	0	20	22	0	0	16	25	0	0	17	28	0	0	23	22	merge_repeat					segmentDup
chr5	15592089	C	T	999	11 11 11 11 11 11 11 11	112	1	0	39	93	0	0	48	108	0	0	56	97	0	0	45	109	0	1	51	94	0	0	42	70	0	1	51	103	0	0	43	90	merge_repeat					segmentDup
chr5	15592090	T	A	999	11 11 11 11 11 11 11 11	112	1	0	39	93	0	0	48	108	0	0	55	97	0	0	45	108	0	1	51	94	0	0	42	70	0	1	51	103	0	0	43	90	merge_repeat					segmentDup
chr5	15615765	T	C	757	11 11 11 11 11 11 11 11	236	0	3	28	237	1	2	28	205	0	1	13	256	0	0	12	242	0	1	5	243	1	0	4	256	0	2	17	228	0	2	21	225	merge_repeat		chromOut		nested	segmentDup
chr5	15624185	C	T	62	11 11 11 11 11 11 11 11	20	0	0	2	26	0	0	4	35	0	1	3	25	0	0	5	22	1	0	3	27	0	0	1	19	0	0	1	20	0	0	2	34	merge_repeat					segmentDup
chr5	15624284	T	C	469	11 11 11 11 11 11 11 11	202	0	0	169	56	0	0	153	49	0	1	201	31	0	1	205	46	0	0	215	36	0	0	204	32	0	0	208	37	1	0	169	56	merge_repeat					segmentDup
chr5	15629783	A	G	999	11 11 11 11 11 11 11 11	85	0	0	68	53	0	0	59	58	0	0	55	40	0	0	48	37	0	0	33	67	0	0	42	47	0	0	52	56	0	0	50	48	merge_repeat					segmentDup
chr5	15630652	G	T	999	11 11 11 11 11 11 11 11	171	0	0	182	11	2	0	210	8	0	0	203	14	0	0	175	9	0	0	177	8	0	0	162	9	1	0	164	9	0	1	234	17	merge_repeat					segmentDup
chr5	15641158	G	A	535	11 11 11 11 11 11 11 11	43	0	0	39	13	1	0	32	14	0	0	32	11	0	0	47	17	0	0	40	10	0	0	35	13	0	0	38	14	0	0	39	7	merge_repeat					segmentDup
chr5	15645496	C	A	943	11 11 11 11 11 11 11 11	43	1	0	34	15	0	0	21	22	0	0	25	36	0	0	38	41	0	0	43	30	0	0	36	36	0	0	30	16	0	0	29	22	merge_repeat					segmentDup
chr5	15647129	A	C	810	11 11 11 11 11 11 11 11	32	0	0	12	25	0	0	7	25	0	0	15	28	0	0	16	20	0	0	10	26	0	0	19	34	0	0	14	24	0	2	14	30	merge_repeat		chromOut			segmentDup
chr5	15648961	C	A	999	11 11 11 11 11 11 11 11	53	0	0	8	52	0	1	5	47	0	0	10	69	0	0	12	95	0	1	12	85	0	0	12	78	0	0	10	84	0	0	11	58	merge_repeat					segmentDup
chr5	15649886	A	T	378	11 11 11 11 11 11 11 11	104	2	0	40	94	1	1	34	80	1	0	20	86	2	1	37	74	0	2	31	79	2	3	21	78	0	1	37	94	0	0	29	86	merge_repeat		chromOut			segmentDup
chr5	15650214	T	C	435	11 11 11 11 11 11 11 11	60	0	0	6	55	1	1	6	62	0	1	16	50	0	0	15	64	0	1	6	70	0	0	9	51	2	1	7	63	1	0	11	51	merge_repeat					segmentDup
chr5	15655575	T	G	611	11 11 11 11 11 11 11 11	248	2	2	38	230	0	2	56	235	1	2	42	234	0	0	44	236	0	0	38	224	1	1	40	208	0	2	40	206	0	2	45	214	merge_repeat					segmentDup
chr5	15678240	A	T	999	11 11 11 11 11 11 11 11	121	0	1	92	81	0	1	98	69	0	0	63	65	0	0	72	79	0	0	73	62	0	0	62	59	0	0	83	84	1	0	70	95	merge_repeat					segmentDup
chr5	15704339	A	C	335	11 11 11 11 11 11 11 11	26	1	0	31	9	0	0	25	9	0	0	19	7	0	0	39	5	0	1	32	5	0	0	35	6	0	0	26	11	0	0	26	5	merge_repeat		chromOut			segmentDup
chr5	15705283	G	A	967	11 11 11 11 11 11 11 11	141	0	0	123	24	0	0	135	37	0	0	106	44	0	2	121	62	0	0	118	57	0	0	103	51	0	0	116	48	1	1	109	30	merge_repeat		chromOut			segmentDup
chr5	15705353	C	T	999	11 11 11 11 11 11 11 11	84	1	0	79	4	0	0	85	8	0	0	101	6	0	0	121	13	0	0	113	8	0	1	111	10	0	0	76	10	0	0	78	6	merge_repeat		chromOut			segmentDup
chr5	15705431	T	C	999	11 11 11 11 11 11 11 11	35	0	0	34	2	1	0	32	4	0	0	48	2	0	0	62	4	0	0	59	3	0	0	63	3	0	0	32	3	0	0	36	2	merge_repeat		chromOut			segmentDup
chr5	15707097	A	T	253	11 11 11 11 11 11 11 11	120	2	3	44	93	2	0	56	62	3	2	51	83	0	1	50	89	2	0	59	90	2	1	42	83	3	1	49	70	2	1	59	71	merge_repeat		chromOut			segmentDup
chr5	15709081	A	G	999	11 11 11 11 11 11 11 11	124	0	0	197	42	0	0	225	32	1	0	134	30	0	1	114	21	0	0	104	20	0	0	106	27	1	1	168	27	1	0	156	35	merge_repeat					segmentDup
chr5	15709180	G	A	249	11 11 11 11 11 11 11 11	63	0	0	57	8	0	0	52	12	0	0	54	13	0	0	63	17	0	0	75	16	0	0	56	8	1	0	55	7	0	0	54	12	merge_repeat					segmentDup
chr5	15709195	A	G	251	11 11 11 11 11 11 11 11	57	0	0	50	8	0	0	45	12	0	0	49	13	0	0	61	18	0	0	75	16	0	0	55	7	0	0	50	7	0	0	51	13	merge_repeat					segmentDup
chr5	15712760	T	G	548	11 11 11 11 11 11 11 11	121	0	1	30	123	1	1	35	129	1	1	20	132	0	2	16	118	0	0	14	149	1	0	17	103	1	2	26	124	0	0	20	140	merge_repeat					segmentDup
chr5	15714331	A	G	999	11 11 11 11 11 11 11 11	193	3	0	77	122	5	1	78	121	3	2	82	147	3	3	81	176	3	1	82	157	3	1	94	137	2	3	67	121	2	2	77	123	merge_repeat					segmentDup
chr5	17088998	A	G	999	11 11 11 11 11 11 11 11	25	0	0	16	9	0	0	28	7	0	0	28	11	0	0	30	6	0	0	23	4	0	0	23	10	0	0	30	10	0	0	26	10	merge_repeat		chromOut
chr5	17089005	G	T	999	11 11 11 11 11 11 11 11	22	0	0	16	6	0	0	26	5	0	0	29	8	0	0	33	7	0	0	23	4	0	0	22	6	0	0	29	7	0	0	25	7	merge_repeat		chromOut
chr5	17299490	C	A	999	11 11 11 11 11 11 11 11	26	0	0	16	24	0	0	14	16	0	0	14	23	0	0	23	28	0	0	13	27	0	0	16	20	0	0	11	15	0	1	18	25	merge_repeat		chromOut		nested
chr5	17299501	C	A	999	11 11 11 11 11 11 11 11	32	0	0	16	28	0	0	17	20	0	0	15	22	0	0	22	26	0	0	14	23	0	0	16	23	0	0	14	18	0	0	19	27	merge_repeat		chromOut		nested
chr5	17451868	G	T	999	11 11 11 11 11 11 11 11	62	0	0	34	29	0	0	40	27	0	0	42	33	0	0	52	30	0	0	49	35	0	0	44	29	0	0	42	20	0	0	43	22
chr5	17492620	G	T	999	11 11 11 11 11 11 11 11	46	0	0	23	37	0	0	19	30	0	0	26	34	0	0	32	32	0	0	38	28	0	0	23	23	0	0	27	35	0	0	19	37	merge_repeat		chromOut
chr5	18240584	A	G	999	11 11 11 11 11 11 11 11	53	0	0	31	28	0	0	26	36	0	0	30	23	0	0	27	35	0	0	25	29	0	0	34	32	0	0	38	30	0	0	31	26
chr5	18240599	A	G	999	11 11 11 11 11 11 11 11	51	0	0	30	32	0	0	27	34	0	0	33	23	0	0	23	35	0	0	24	30	0	0	34	30	0	0	43	31	0	0	30	21
chr5	18240641	T	G	999	11 11 11 11 11 11 11 11	45	0	0	24	34	0	0	28	30	0	0	32	26	0	0	36	38	0	0	20	25	0	0	32	35	0	0	40	34	0	0	26	26
chr5	18240663	A	G	999	11 11 11 11 11 11 11 11	44	0	0	24	31	0	0	28	29	0	0	32	26	0	0	37	36	0	0	18	26	0	0	27	31	0	0	37	34	0	0	29	26
chr5	19122639	C	A	999	11 11 11 11 11 11 11 11	49	0	0	31	31	0	0	28	21	0	0	39	24	0	0	34	30	0	0	46	30	0	0	30	22	0	0	35	32	0	0	34	33
chr5	20869714	T	G	999	11 11 11 11 11 11 11 11	34	0	0	18	24	0	0	15	19	0	0	21	22	0	0	25	30	0	0	40	30	0	0	20	21	0	0	19	23	0	0	23	14	merge_repeat		chromOut	simple
chr5	21058709	C	G	999	11 11 11 11 11 11 11 11	53	0	0	33	28	0	0	45	27	0	0	37	32	0	0	44	32	0	0	35	18	0	0	38	29	0	0	51	30	0	0	34	39
chr5	21606879	G	A	999	11 11 11 11 11 11 11 11	44	0	0	20	31	0	0	29	26	0	0	22	22	0	0	23	37	0	1	38	29	0	0	31	19	0	0	24	31	0	0	27	42	merge_repeat		chromOut
chr5	21944034	A	G	999	11 11 11 11 11 11 11 11	47	0	0	35	18	0	0	33	27	0	0	37	19	0	0	32	25	0	0	46	24	0	0	32	24	0	0	27	20	0	0	39	23	merge_repeat		chromOut
chr5	25106645	G	T	999	11 11 11 11 11 11 11 11	20	1	0	15	16	0	0	17	11	0	0	10	20	1	0	13	15	0	0	16	17	0	0	16	18	0	0	10	10	1	0	11	14	merge_repeat		chromOut		nested
chr5	25813288	T	G	999	11 11 11 11 11 11 11 11	31	0	0	25	21	0	0	25	23	0	0	31	12	0	0	20	12	0	0	26	17	0	0	26	14	0	0	30	16	0	0	23	8
chr5	25843094	C	G	999	11 11 11 11 11 11 11 11	35	0	0	27	25	0	0	18	21	0	0	29	33	0	0	32	17	0	0	23	35	0	0	14	27	0	0	17	18	0	0	24	27	merge_repeat		chromOut		nested
chr5	25843095	G	C	999	11 11 11 11 11 11 11 11	35	0	0	27	25	0	0	18	21	0	0	29	33	0	0	32	17	0	0	23	35	0	0	15	27	0	0	17	18	0	0	24	27	merge_repeat		chromOut		nested
chr5	26098074	C	T	596	11 11 11 11 11 11 11 11	20	0	0	18	2	0	0	28	6	0	0	18	4	0	0	25	6	0	0	29	7	0	0	25	7	0	0	15	5	0	0	15	7	merge_repeat					segmentDup
chr5	30623399	T	C	999	11 11 11 11 11 11 11 11	24	0	0	24	9	0	0	26	14	0	0	16	9	0	0	23	16	0	0	18	25	0	0	12	15	0	0	16	8	0	0	23	12
chr5	30664498	G	T	999	11 11 11 11 11 11 11 11	38	0	0	19	37	0	0	16	27	0	0	16	29	1	0	18	19	0	0	24	19	0	0	25	23	0	0	21	27	0	0	27	17
chr5	30781104	T	G	999	11 11 11 11 11 11 11 11	23	0	0	10	13	0	0	14	20	0	0	7	21	0	0	20	29	0	0	10	29	0	0	10	21	0	0	8	16	0	0	4	23
chr5	30881651	G	A	999	11 11 11 11 11 11 11 11	42	0	0	17	30	0	0	18	40	0	0	33	26	0	0	24	27	0	0	14	28	0	0	20	28	0	0	18	24	0	0	30	26
chr5	30881658	C	A	999	11 11 11 11 11 11 11 11	41	0	0	21	30	0	0	19	37	0	0	32	24	0	0	26	26	0	0	15	26	0	0	19	26	0	0	18	25	0	0	26	28
chr5	30881675	T	A	999	11 11 11 11 11 11 11 11	42	0	0	20	26	0	0	19	27	0	0	32	22	0	0	23	27	0	0	19	23	0	0	24	31	0	0	18	30	0	0	29	18
chr5	30881710	C	G	999	11 11 11 11 11 11 11 11	56	0	0	21	41	0	0	23	33	0	0	41	33	0	0	31	30	0	0	30	30	0	0	25	33	0	0	28	45	0	0	31	25	merge_repeat		chromOut
chr5	30881712	C	A	999	11 11 11 11 11 11 11 11	55	0	0	21	40	0	0	23	32	0	0	41	33	0	0	31	29	0	0	30	29	0	0	25	33	0	0	27	44	0	0	31	25	merge_repeat		chromOut
chr5	30932184	C	A	999	11 11 11 11 11 11 11 11	28	0	0	16	12	0	0	13	19	0	0	14	19	0	0	17	29	0	0	16	20	0	0	20	16	0	0	21	10	0	0	14	16	merge_repeat		chromOut
chr5	32716317	C	A	999	11 11 11 11 11 11 11 11	40	0	0	19	21	0	0	30	17	0	0	29	28	0	0	28	29	0	0	31	24	0	0	27	26	0	0	30	20	0	0	27	14
chr5	33504627	A	T	999	11 11 11 11 11 11 11 11	23	0	0	12	13	0	0	16	8	0	0	22	5	0	0	14	17	0	0	10	18	0	0	8	21	0	0	15	8	0	0	13	13
chr5	33504647	T	C	999	11 11 11 11 11 11 11 11	31	0	0	18	14	0	0	24	10	0	0	24	7	0	0	16	16	0	0	17	18	0	0	13	21	0	0	21	11	0	0	16	15
chr5	34041993	G	C	999	11 11 11 11 11 11 11 11	20	0	0	14	15	0	0	21	16	0	0	23	9	0	0	10	13	0	0	14	12	0	0	19	10	0	0	14	6	0	0	22	4	merge_repeat		chromOut
chr5	35466904	A	T	999	11 11 11 11 11 11 11 11	28	0	0	21	17	0	0	15	14	0	0	19	15	0	0	27	30	0	0	27	24	0	0	13	15	0	0	19	14	0	0	23	13	merge_repeat	trfMask	chromOut	simple
chr5	37602014	C	T	999	11 11 11 11 11 11 11 11	32	0	0	17	31	0	0	12	20	0	0	21	17	0	0	22	29	0	0	24	19	0	0	24	18	0	0	25	18	0	0	20	17	merge_repeat		chromOut
chr5	37602062	G	T	999	11 11 11 11 11 11 11 11	21	0	0	16	27	0	0	7	15	0	0	14	14	0	0	10	11	0	0	14	15	0	0	16	15	0	0	14	16	0	0	12	19	merge_repeat	trfMask	chromOut	simple
chr5	38260635	C	A	999	11 11 11 11 11 11 11 11	52	0	0	31	23	0	1	34	21	0	0	30	29	0	0	29	45	0	0	25	37	0	0	27	25	0	0	28	35	0	0	37	22
chr5	38262310	C	A	999	11 11 11 11 11 11 11 11	26	0	0	13	14	0	0	10	18	0	0	9	22	0	0	13	26	0	0	14	12	0	0	13	20	0	0	9	18	0	0	11	15	merge_repeat		chromOut
chr5	38277285	C	G	999	11 11 11 11 11 11 11 11	42	0	0	24	31	0	0	20	26	0	0	17	29	0	0	30	38	0	0	33	26	0	0	21	22	0	0	23	22	0	0	18	24
chr5	38300085	G	C	999	11 11 11 11 11 11 11 11	46	0	0	30	35	0	0	21	25	0	0	34	30	0	0	26	39	0	0	31	38	0	0	23	27	0	0	22	32	0	0	27	31
chr5	38376779	G	T	999	11 11 11 11 11 11 11 11	27	0	0	24	7	0	0	22	12	0	0	20	11	0	0	16	11	0	0	29	20	0	0	24	4	0	0	35	12	0	0	21	7	merge_repeat		chromOut		nested
chr5	38391012	C	A	999	11 11 11 11 11 11 11 11	22	0	0	24	7	0	0	14	8	0	0	14	8	0	0	27	9	0	1	19	17	0	1	14	9	0	0	24	8	0	0	10	12
chr5	38500577	G	C	999	11 11 11 11 11 11 11 11	52	0	0	24	28	0	0	32	26	0	0	27	27	0	0	40	36	0	0	32	29	0	0	41	25	0	0	36	24	0	0	36	30
chr5	38728900	A	G	999	11 11 11 11 11 11 11 11	44	0	0	24	20	0	1	33	22	0	0	31	16	0	0	24	29	0	1	32	26	0	1	26	23	0	0	28	20	0	0	26	19
chr5	39611846	C	T	999	11 11 11 11 11 11 11 11	40	0	0	29	17	0	0	22	41	0	0	22	26	0	0	20	20	0	0	33	25	0	0	26	19	0	0	24	28	0	0	33	28
chr5	40313917	T	A	999	11 11 11 11 11 11 11 11	27	0	0	14	13	0	0	16	16	0	0	24	14	0	0	19	21	0	0	34	25	0	0	12	15	0	0	11	20	0	0	19	17
chr5	41953442	C	A	999	11 11 11 11 11 11 11 11	42	0	0	26	28	1	0	23	19	0	0	23	19	1	0	29	28	0	0	25	31	0	0	28	26	2	0	29	38	1	1	31	31
chr5	42872599	G	T	999	11 11 11 11 11 11 11 11	53	0	0	27	37	0	0	25	28	0	0	29	36	0	0	49	33	0	0	41	30	0	0	36	28	0	0	41	43	0	0	33	38	merge_repeat		chromOut	simple
chr5	43557921	T	C	999	11 11 11 11 11 11 11 11	60	0	0	32	32	0	0	34	31	0	0	29	36	0	0	36	37	0	0	37	24	0	0	36	32	0	0	25	35	0	0	26	37	merge_repeat	trfMask	chromOut	simple
chr5	44500991	A	G	999	11 11 11 11 11 11 11 11	36	0	0	32	32	0	0	25	11	0	0	21	26	0	0	21	23	0	0	33	27	0	0	21	22	0	0	15	26	0	0	31	20	merge_repeat		chromOut
chr5	46193132	T	A	999	11 11 11 11 11 11 11 11	47	0	0	30	37	0	0	20	30	0	0	16	31	0	0	24	33	0	0	16	38	0	0	25	36	0	0	25	33	0	0	23	39	merge_repeat		chromOut		nested
chr5	46193224	T	A	999	11 11 11 11 11 11 11 11	53	0	0	38	37	0	0	21	35	0	0	34	37	0	0	30	38	0	0	34	35	0	0	25	28	0	0	19	37	0	0	31	48	merge_repeat		chromOut		nested
chr5	47376663	A	G	999	11 11 11 11 11 11 11 11	53	0	0	24	35	0	0	26	38	0	0	25	36	0	0	31	29	0	0	27	30	0	0	26	27	0	0	25	30	0	0	31	26	merge_repeat		chromOut		nested
chr5	47802361	G	A	999	11 11 11 11 11 11 11 11	44	0	0	14	30	0	0	22	29	0	0	17	36	0	0	26	33	0	0	25	32	0	0	17	29	0	0	32	32	0	0	26	36
chr5	49110558	T	C	999	11 11 11 11 11 11 11 11	64	0	0	31	41	0	0	28	36	0	0	37	34	0	0	42	25	0	0	41	35	0	0	38	32	0	0	30	41	0	0	43	34
chr5	49934786	G	T	999	11 11 11 11 11 11 11 11	34	0	0	33	19	0	0	33	15	0	0	16	19	0	0	24	15	0	0	34	14	0	0	27	15	0	0	24	12	0	0	19	15	merge_repeat		chromOut
chr5	50389015	T	A	999	11 11 11 11 11 11 11 11	58	0	0	29	29	0	0	36	47	0	0	28	43	0	0	28	38	0	0	33	40	0	0	38	43	0	0	28	39	0	0	23	36
chr5	50612152	C	T	999	11 11 11 11 11 11 11 11	71	0	0	39	48	0	0	41	33	0	0	32	39	0	0	32	40	0	0	36	40	1	0	44	44	0	0	39	44	0	0	45	34	merge_repeat				nested
chr5	50953631	C	G	999	11 11 11 11 11 11 11 11	49	0	0	19	30	0	0	19	37	0	0	16	35	0	0	31	20	0	0	28	23	0	0	20	36	0	0	15	35	0	0	23	36	merge_repeat		chromOut		nested
chr5	51545903	T	C	999	11 11 11 11 11 11 11 11	38	0	0	24	25	0	0	31	24	0	0	32	22	0	0	28	33	0	0	38	17	0	0	32	28	0	0	24	14	0	0	18	22
chr5	52720692	C	T	999	11 11 11 11 11 11 11 11	33	0	0	17	24	0	0	29	27	0	0	17	28	0	0	29	27	0	0	26	20	0	0	31	27	1	0	15	29	0	0	11	22	merge_repeat		chromOut
chr5	52720725	C	G	999	11 11 11 11 11 11 11 11	38	0	0	14	24	0	0	28	24	0	0	18	22	0	0	24	28	0	0	19	25	0	0	24	24	0	0	14	27	0	0	18	20	merge_repeat		chromOut
chr5	52740952	G	C	999	11 11 11 11 11 11 11 11	56	0	0	31	32	0	0	29	36	0	0	36	31	0	0	29	35	0	0	48	34	0	0	29	38	0	0	35	31	0	0	23	33	merge_repeat		chromOut		nested
chr5	53032157	T	C	999	11 11 11 11 11 11 11 11	46	0	0	29	47	0	0	20	26	0	0	24	32	0	0	26	29	0	0	31	33	0	0	24	35	0	0	22	30	0	0	19	33
chr5	54940424	T	A	999	11 11 11 11 11 11 11 11	44	0	0	31	30	0	0	32	33	0	0	37	26	0	0	32	26	0	0	19	25	0	0	22	37	0	0	30	31	0	0	22	39	merge_repeat		chromOut		nested
chr5	55323600	T	C	999	11 11 11 11 11 11 11 11	35	0	0	17	30	0	0	13	32	0	0	16	29	0	0	14	27	0	0	16	37	0	0	9	26	0	0	10	27	0	0	15	27	merge_repeat				nested
chr5	55323624	T	C	999	11 11 11 11 11 11 11 11	32	0	0	15	26	0	0	13	30	0	0	10	22	0	0	17	23	0	0	15	33	0	0	10	26	0	0	10	23	0	0	15	26	merge_repeat				nested
chr5	55536068	A	G	999	11 11 11 11 11 11 11 11	58	0	0	33	41	0	0	52	30	0	0	34	46	0	0	26	40	0	0	35	29	0	0	32	26	0	0	27	38	0	0	27	38
chr5	55774848	C	G	999	11 11 11 11 11 11 11 11	37	0	0	26	30	0	0	24	20	0	0	16	26	0	0	22	28	0	0	27	20	0	0	15	22	0	0	32	25	0	0	31	19	merge_repeat		chromOut
chr5	57504570	C	A	999	11 11 11 11 11 11 11 11	62	0	0	39	23	0	0	45	26	0	0	47	24	0	0	46	34	0	0	50	23	0	0	34	31	0	0	43	28	0	0	40	28
chr5	57504586	G	T	999	11 11 11 11 11 11 11 11	59	0	0	35	24	0	0	42	22	0	0	42	22	0	0	42	28	0	0	48	21	0	0	36	28	0	0	45	30	0	0	46	24
chr5	57559426	A	C	705	11 11 11 11 11 11 11 11	43	1	0	28	23	0	0	24	28	0	0	23	20	0	0	22	40	0	0	29	35	0	0	21	29	0	0	45	32	0	0	23	23	merge_repeat		chromOut		nested
chr5	57598562	A	G	999	11 11 11 11 11 11 11 11	66	0	0	35	32	0	0	43	33	0	0	38	39	0	0	37	29	0	0	42	27	0	0	43	25	0	0	45	29	0	0	42	29
chr5	57661651	C	G	999	11 11 11 11 11 11 11 11	55	0	0	33	38	0	0	32	29	0	0	30	25	0	0	24	32	0	0	37	26	0	0	29	26	0	0	33	23	0	0	23	43
chr5	57663404	T	G	999	11 11 11 11 11 11 11 11	32	0	0	18	22	0	0	16	16	1	0	17	23	2	1	20	24	0	0	24	18	1	0	19	21	1	0	18	17	0	0	23	27	merge_repeat		chromOut
chr5	58105142	A	G	999	11 11 11 11 11 11 11 11	24	0	0	9	17	0	0	9	19	0	0	6	18	0	0	6	26	0	0	6	18	0	0	7	22	0	0	5	25	0	0	7	21	merge_repeat		chromOut
chr5	58488087	T	G	999	11 11 11 11 11 11 11 11	42	0	0	23	22	0	0	20	32	0	0	24	31	0	0	26	28	0	0	19	40	0	0	18	24	0	0	21	21	0	0	23	26	merge_repeat		chromOut		nested
chr5	60841525	A	T	999	11 11 11 11 11 11 11 11	33	0	0	13	27	0	0	6	32	0	0	8	25	0	0	13	33	0	0	18	33	0	0	14	19	0	0	9	24	0	0	19	33
chr5	63152374	C	A	999	11 11 11 11 11 11 11 11	37	0	0	15	27	0	0	20	34	0	0	15	23	0	0	17	20	0	0	17	24	0	0	21	34	0	0	22	20	0	0	21	18	merge_repeat		chromOut		nested
chr5	64737069	T	C	999	11 11 11 11 11 11 11 11	26	0	0	18	16	0	0	16	10	0	0	19	18	0	0	26	14	0	0	27	32	0	0	18	10	0	0	16	15	0	0	15	13
chr5	66686044	T	C	999	11 11 11 11 11 11 11 11	45	0	0	16	29	0	0	29	41	0	0	22	35	0	0	29	45	0	0	18	36	0	0	31	29	0	0	12	36	0	0	22	33
chr5	68753309	T	C	999	11 11 11 11 11 11 11 11	24	0	0	13	15	0	0	13	11	0	0	16	15	0	0	22	19	0	0	16	16	0	0	17	14	0	0	17	17	0	0	18	13	merge_repeat	trfMask	chromOut	simple	nested
chr5	68796342	G	T	999	11 11 11 11 11 11 11 11	30	0	0	17	31	0	0	15	30	0	0	18	16	0	0	19	37	0	0	25	38	0	0	12	34	0	0	11	19	0	0	13	23
chr5	69357018	T	G	999	11 11 11 11 11 11 11 11	22	0	0	12	10	0	1	24	10	0	0	17	13	0	0	19	21	0	0	22	25	0	0	27	19	0	0	11	11	0	1	14	14
chr5	70493297	A	G	999	11 11 11 11 11 11 11 11	59	0	0	33	30	0	0	46	33	0	0	36	29	0	0	31	28	0	0	42	36	0	0	35	30	0	0	37	29	0	0	36	30	merge_repeat		chromOut
chr5	71143078	T	C	999	11 11 11 11 11 11 11 11	45	0	0	27	25	0	0	30	15	0	0	37	27	0	0	35	27	0	0	30	31	0	0	25	27	0	0	28	28	0	0	21	29	merge_repeat		chromOut		nested
chr5	75364723	A	C	999	11 11 11 11 11 11 11 11	48	0	0	34	20	0	0	34	20	0	0	40	22	0	0	44	32	0	0	38	25	0	0	38	18	0	0	28	20	0	0	31	17
chr5	75397327	A	G	999	11 11 11 11 11 11 11 11	25	0	0	17	22	0	0	26	19	0	0	16	9	0	0	26	12	0	0	19	15	0	0	25	17	0	0	30	13	0	0	19	7
chr5	75465016	C	G	999	11 11 11 11 11 11 11 11	47	0	0	20	27	0	0	29	31	0	0	18	39	0	0	19	31	0	0	26	27	0	0	30	28	0	0	20	27	0	0	21	27	merge_repeat		chromOut
chr5	76107246	C	T	999	11 11 11 11 11 11 11 11	27	0	0	27	8	0	0	26	8	0	0	15	12	0	0	31	8	0	0	23	7	0	0	27	17	0	0	30	6	0	0	26	11	merge_repeat		chromOut
chr5	76107294	G	C	999	11 11 11 11 11 11 11 11	31	0	0	20	12	0	0	24	17	0	0	14	17	0	0	36	15	0	0	24	11	0	0	23	24	0	0	24	15	0	0	19	17	merge_repeat		chromOut
chr5	76315310	A	G	999	11 11 11 11 11 11 11 11	49	0	0	20	29	0	0	36	41	0	0	33	26	0	0	37	22	0	0	40	29	0	0	32	29	0	0	32	33	0	0	27	34	merge_repeat		chromOut
chr5	76467972	C	G	999	11 11 11 11 11 11 11 11	44	0	0	20	35	0	0	21	46	0	0	18	31	0	0	22	29	0	0	26	22	0	0	18	27	0	1	14	29	0	0	16	29	merge_repeat	trfMask	chromOut	simple	nested
chr5	78148398	A	C	999	11 11 11 11 11 11 11 11	39	0	0	20	22	0	0	23	23	0	0	31	15	0	0	22	27	0	0	22	29	0	0	24	33	0	0	24	19	0	0	21	18
chr5	78343662	C	A	999	11 11 11 11 11 11 11 11	32	0	0	21	11	0	0	18	17	0	0	18	24	1	1	25	19	1	1	18	19	1	1	18	18	0	0	15	25	0	1	25	19	merge_repeat	trfMask	chromOut	simple
chr5	78614048	G	T	999	11 11 11 11 11 11 11 11	55	0	0	32	28	0	0	30	25	0	0	38	27	0	0	37	29	0	0	30	32	0	0	21	36	0	0	34	25	0	0	44	28	merge_repeat		chromOut
chr5	78713767	T	G	999	11 11 11 11 11 11 11 11	57	0	0	31	34	0	0	29	36	0	0	30	38	0	0	43	38	0	0	22	35	0	0	29	36	0	0	25	39	0	0	34	28	merge_repeat		chromOut
chr5	80767381	A	T	999	11 11 11 11 11 11 11 11	22	0	0	12	17	0	0	10	12	0	0	8	14	0	0	10	17	0	0	9	14	0	0	14	11	0	0	7	15	0	0	9	14	merge_repeat		chromOut		nested
chr5	81679998	T	C	999	11 11 11 11 11 11 11 11	45	0	0	37	29	0	0	38	20	0	0	44	28	0	0	32	45	0	0	33	33	0	0	35	38	0	0	25	20	0	0	33	24	merge_repeat		chromOut
chr5	82506412	A	T	999	11 11 11 11 11 11 11 11	43	0	0	29	51	0	0	19	41	0	0	28	25	0	0	43	30	0	0	18	25	0	0	27	31	0	0	24	34	0	0	22	44	merge_repeat		chromOut		nested
chr5	83333345	C	T	999	11 11 11 11 11 11 11 11	55	0	0	27	36	0	0	32	37	0	0	26	31	0	0	31	31	0	0	37	24	0	0	28	32	0	0	27	28	0	0	26	30
chr5	83884952	T	A	999	11 11 11 11 11 11 11 11	56	0	0	35	31	0	0	37	33	0	0	26	30	0	0	32	33	0	0	40	28	0	0	37	38	0	0	41	23	0	0	34	29
chr5	83964351	G	T	999	11 11 11 11 11 11 11 11	41	0	0	27	29	0	0	18	25	0	0	27	14	0	0	30	32	0	0	35	15	0	0	26	28	0	0	24	26	0	0	32	30	merge_repeat		chromOut		nested
chr5	83964390	A	T	999	11 11 11 11 11 11 11 11	48	0	0	23	44	0	0	15	33	0	0	28	28	0	0	33	38	0	0	32	21	0	0	27	33	0	0	23	32	0	0	31	31	merge_repeat		chromOut		nested
chr5	84026893	T	A	999	11 11 11 11 11 11 11 11	58	0	0	27	33	0	0	29	29	0	0	21	48	0	0	31	30	0	0	25	35	0	0	34	38	0	0	38	33	0	0	23	41
chr5	85362919	T	G	999	11 11 11 11 11 11 11 11	56	0	0	29	29	0	0	46	26	0	0	36	30	0	0	35	21	0	0	33	32	0	0	30	28	0	0	38	38	0	0	43	31	merge_repeat		chromOut
chr5	85363986	A	G	999	11 11 11 11 11 11 11 11	25	0	0	24	18	0	0	15	20	0	0	23	18	0	0	20	17	0	0	23	14	0	0	22	17	0	0	18	7	0	0	16	20
chr5	85364116	A	G	999	11 11 11 11 11 11 11 11	35	0	0	32	21	1	0	31	19	0	0	30	11	0	0	26	22	0	0	20	15	0	0	30	23	0	0	21	24	1	0	27	22
chr5	85364208	C	A	999	11 11 11 11 11 11 11 11	46	0	0	30	24	0	0	32	26	0	0	29	17	0	0	29	35	0	0	30	25	0	0	29	26	0	0	33	31	0	0	21	28
chr5	85364244	T	A	999	11 11 11 11 11 11 11 11	51	0	0	27	24	0	0	28	23	0	0	24	27	0	0	34	34	0	0	31	31	0	0	24	31	0	0	28	28	0	0	18	33
chr5	85364347	C	T	999	11 11 11 11 11 11 11 11	48	0	0	29	35	0	0	29	28	0	0	36	36	0	0	38	27	0	0	30	26	0	0	27	27	0	0	26	22	0	0	21	34
chr5	85465628	C	A	999	11 11 11 11 11 11 11 11	25	0	0	12	13	0	1	15	17	0	0	24	21	0	0	12	17	0	0	23	27	0	0	12	17	0	0	15	22	0	0	14	21	merge_repeat		chromOut		nested
chr5	85717955	G	A	999	11 11 11 11 11 11 11 11	43	0	0	24	26	0	0	40	21	0	0	25	18	0	0	30	36	0	0	27	40	0	0	32	25	0	0	19	25	0	0	23	28	merge_repeat		chromOut		nested
chr5	85791300	C	T	999	11 11 11 11 11 11 11 11	47	0	0	32	15	0	0	42	26	0	0	33	25	0	0	40	36	0	0	30	18	0	0	29	26	0	0	30	27	0	0	23	24	merge_repeat		chromOut		nested
chr5	86703601	A	G	999	11 11 11 11 11 11 11 11	26	0	0	20	13	0	0	11	17	0	0	20	16	0	0	16	15	0	0	20	15	0	0	22	20	0	0	17	9	0	0	17	12	merge_repeat		chromOut
chr5	88381307	A	G	999	11 11 11 11 11 11 11 11	45	0	0	40	24	0	0	27	29	0	0	24	35	0	0	35	27	0	0	24	21	0	0	22	24	0	0	34	32	0	0	35	27
chr5	89282777	A	C	999	11 11 11 11 11 11 11 11	47	0	0	21	36	0	0	28	22	0	0	23	24	0	0	37	26	0	0	21	40	0	0	18	29	0	0	30	34	0	0	27	22	merge_repeat	trfMask	chromOut	simple
chr5	90886573	T	G	999	11 11 11 11 11 11 11 11	47	0	0	28	19	0	0	40	24	0	0	38	34	0	0	33	22	0	0	33	31	0	0	25	36	0	0	36	22	0	0	38	18
chr5	92944673	A	G	999	11 11 11 11 11 11 11 11	26	0	0	20	6	0	0	23	13	0	0	27	15	0	0	28	22	0	0	28	14	0	0	20	10	0	0	28	15	0	0	22	13
chr5	94344617	A	G	999	11 11 11 11 11 11 11 11	60	0	0	42	40	0	0	38	32	0	0	35	31	0	0	50	32	0	0	50	41	0	0	30	30	0	0	35	31	0	0	33	32	merge_repeat		chromOut		nested	segmentDup
chr5	100102653	T	C	999	11 11 11 11 11 11 11 11	48	0	0	20	36	0	0	25	23	0	0	24	28	0	0	32	30	0	0	27	40	0	0	23	27	0	0	35	42	0	0	32	30	merge_repeat		chromOut
chr5	100467719	G	A	999	11 11 11 11 11 11 11 11	24	0	0	9	15	0	0	11	21	0	0	10	16	0	0	12	22	0	0	7	22	0	0	5	20	0	0	4	21	0	0	4	23	merge_repeat		chromOut
chr5	100634984	C	A	999	11 11 11 11 11 11 11 11	22	0	0	12	14	0	0	6	16	0	0	12	19	0	0	15	18	0	0	6	16	0	0	6	16	0	0	10	19	0	0	1	23	merge_repeat		chromOut
chr5	101330678	A	G	999	11 11 11 11 11 11 11 11	40	0	0	22	27	0	0	30	35	0	0	31	35	0	0	41	31	0	0	32	28	0	0	26	24	0	0	17	23	0	0	29	18
chr5	103445196	A	C	999	11 11 11 11 11 11 11 11	22	0	0	23	5	0	0	19	3	0	0	26	7	0	0	35	10	0	0	13	11	0	0	27	12	0	0	23	7	0	0	14	8	merge_repeat		chromOut
chr5	105054159	A	G	999	11 11 11 11 11 11 11 11	26	0	0	8	25	0	0	12	17	0	0	6	23	0	0	9	22	0	0	8	24	0	0	13	24	0	0	13	21	0	0	6	20	merge_repeat		chromOut
chr5	105230836	T	C	999	11 11 11 11 11 11 11 11	33	0	0	23	15	0	0	22	13	0	0	25	24	0	0	17	16	0	0	28	21	0	0	20	23	0	0	25	17	0	0	20	13	merge_repeat		chromOut		nested	segmentDup
chr5	105230837	C	T	999	11 11 11 11 11 11 11 11	33	0	0	23	15	0	0	22	13	0	0	25	24	0	0	17	16	0	0	28	20	0	0	20	23	0	0	25	17	0	0	20	13	merge_repeat		chromOut		nested	segmentDup
chr5	111071628	A	G	999	11 11 11 11 11 11 11 11	42	0	0	30	18	0	0	35	19	0	0	32	23	0	0	38	13	0	0	38	29	0	0	36	18	0	0	25	17	0	0	20	28
chr5	112084211	C	A	999	11 11 11 11 11 11 11 11	71	0	0	34	37	0	0	39	56	0	0	37	42	0	0	27	60	0	0	27	44	0	0	31	44	0	0	28	48	0	0	38	50	merge_repeat	trfMask	chromOut	simple
chr5	112444205	C	A	999	11 11 11 11 11 11 11 11	39	0	0	39	23	0	0	39	22	0	0	25	14	0	0	33	22	0	0	33	37	0	0	37	21	0	0	33	21	0	0	33	24	merge_repeat		chromOut		nested
chr5	113536402	T	A	999	11 11 11 11 11 11 11 11	50	0	0	24	26	0	0	31	24	0	0	29	27	0	0	36	22	0	0	33	18	0	0	34	20	0	0	29	23	0	0	28	22	merge_repeat		chromOut
chr5	114965643	A	C	999	11 11 11 11 11 11 11 11	36	0	0	16	28	0	0	18	18	0	0	16	26	0	0	23	23	0	0	19	19	0	0	21	23	0	0	25	17	0	0	29	10	merge_repeat		chromOut
chr5	115186510	T	C	999	11 11 11 11 11 11 11 11	23	0	0	14	14	0	0	20	13	0	0	15	14	0	0	23	27	0	0	13	20	0	0	21	14	0	0	10	17	0	0	17	6
chr5	115202063	A	T	999	11 11 11 11 11 11 11 11	52	0	0	32	39	0	0	28	27	0	0	43	36	0	0	38	31	0	0	34	29	0	0	21	33	0	0	28	24	0	0	28	31
chr5	115202077	C	T	999	11 11 11 11 11 11 11 11	52	0	0	33	36	0	0	33	24	0	0	41	36	0	0	39	28	0	0	39	27	0	0	25	31	0	0	26	26	0	0	30	32
chr5	115210777	A	G	999	11 11 11 11 11 11 11 11	24	0	0	9	25	0	0	7	17	0	0	10	18	0	0	11	35	0	0	7	27	0	0	11	30	0	0	13	27	0	0	9	15
chr5	115213747	A	C	999	11 11 11 11 11 11 11 11	25	0	0	10	18	0	0	6	19	0	0	10	18	0	0	16	32	0	0	20	25	0	0	11	30	0	0	9	17	0	0	14	20	merge_repeat	trfMask	chromOut	simple
chr5	115217386	A	G	999	11 11 11 11 11 11 11 11	41	0	0	22	37	0	0	12	30	0	0	19	34	0	0	18	36	0	0	25	31	0	0	30	22	0	0	20	21	0	0	27	27	merge_repeat		chromOut		nested
chr5	116765766	A	T	999	11 11 11 11 11 11 11 11	25	0	0	10	15	0	0	14	27	0	0	12	24	0	0	11	27	0	0	14	28	0	0	21	14	0	0	12	18	0	0	19	18	merge_repeat	trfMask	chromOut	simple
chr5	117024408	A	G	999	11 11 11 11 11 11 11 11	38	0	0	27	11	0	0	25	17	0	0	32	19	0	0	32	27	0	0	31	31	0	0	27	17	0	0	30	16	0	0	38	22	merge_repeat				nested
chr5	118337464	G	T	999	11 11 11 11 11 11 11 11	38	0	0	32	20	0	0	20	21	0	0	16	24	0	0	28	20	0	0	21	21	0	0	18	20	0	0	15	25	0	0	24	21	merge_repeat	trfMask	chromOut	simple	nested
chr5	118351747	A	C	999	11 11 11 11 11 11 11 11	22	0	0	4	21	0	0	10	17	0	0	7	19	0	0	10	37	0	0	11	21	0	0	5	17	0	0	6	24	0	0	7	26	merge_repeat	trfMask	chromOut	simple	nested
chr5	118432150	A	T	999	11 11 11 11 11 11 11 11	20	0	0	17	10	0	0	13	13	0	0	8	21	0	0	20	14	0	0	10	10	0	0	14	17	0	0	20	9	0	0	13	20	merge_repeat	trfMask	chromOut	simple
chr5	118432187	A	T	999	11 11 11 11 11 11 11 11	23	0	0	16	14	0	0	13	14	0	0	9	21	0	0	21	13	0	0	12	11	0	0	17	14	0	0	21	6	0	0	14	15	merge_repeat	trfMask	chromOut	simple
chr5	118432201	A	T	999	11 11 11 11 11 11 11 11	20	0	0	16	12	0	0	13	10	0	0	9	19	0	0	18	10	0	0	10	10	0	0	14	9	0	0	17	3	0	1	16	10	merge_repeat	trfMask	chromOut	simple
chr5	118620370	G	C	999	11 11 11 11 11 11 11 11	42	0	0	30	28	0	0	29	21	0	0	40	25	0	0	33	22	0	0	34	21	0	0	29	30	0	0	31	30	0	0	27	15	merge_repeat		chromOut
chr5	118911122	G	T	999	11 11 11 11 11 11 11 11	80	0	0	45	55	0	0	46	49	0	0	46	55	0	0	44	41	0	0	47	46	0	0	39	46	0	0	41	39	0	0	42	45	merge_repeat	trfMask	chromOut	simple
chr5	118911204	G	T	999	11 11 11 11 11 11 11 11	71	0	0	37	53	0	0	55	44	0	0	37	47	0	0	38	36	0	0	35	36	0	0	35	37	0	0	39	37	0	0	48	43	merge_repeat		chromOut	simple
chr5	118911233	T	G	999	11 11 11 11 11 11 11 11	55	0	0	30	51	0	0	44	37	0	0	40	41	0	0	39	34	0	0	28	27	0	0	30	29	0	0	37	34	0	0	42	37	merge_repeat		chromOut	simple
chr5	118911236	G	T	999	11 11 11 11 11 11 11 11	55	0	0	30	51	0	0	44	37	0	0	40	41	0	0	39	34	0	0	28	27	0	0	30	29	0	0	37	34	0	0	41	37	merge_repeat		chromOut	simple
chr5	118911240	G	T	999	11 11 11 11 11 11 11 11	55	0	0	30	51	0	0	44	37	0	0	40	41	0	0	38	34	0	0	28	27	0	0	30	29	0	0	37	34	0	0	41	37	merge_repeat		chromOut	simple
chr5	118911245	G	T	999	11 11 11 11 11 11 11 11	55	0	0	30	51	0	0	44	37	0	0	40	41	0	0	39	34	0	0	28	27	0	0	30	29	0	0	37	34	0	0	42	37	merge_repeat		chromOut	simple
chr5	118911271	G	T	999	11 11 11 11 11 11 11 11	31	0	0	18	31	0	0	24	23	0	0	19	24	0	0	20	25	0	0	14	17	0	0	20	17	0	0	19	23	0	0	24	25	merge_repeat			simple
chr5	118911273	G	T	999	11 11 11 11 11 11 11 11	31	1	0	18	31	0	0	24	23	0	0	19	24	0	0	20	25	0	0	14	17	0	0	20	17	0	0	19	23	0	0	24	25	merge_repeat			simple
chr5	118911274	T	G	999	11 11 11 11 11 11 11 11	31	1	0	18	31	0	0	24	23	0	0	19	24	0	0	20	25	0	0	14	17	0	0	21	17	0	0	19	23	0	0	24	25	merge_repeat			simple
chr5	118911275	A	T	999	11 11 11 11 11 11 11 11	31	0	0	18	31	0	0	24	23	0	0	19	24	0	0	20	25	0	0	14	17	0	0	21	17	0	0	19	23	0	0	24	25	merge_repeat			simple
chr5	118911279	G	T	999	11 11 11 11 11 11 11 11	36	0	0	22	32	0	0	25	24	0	0	21	25	0	0	22	29	0	0	15	21	0	0	23	20	0	0	20	25	0	0	24	26	merge_repeat		chromOut
chr5	119141291	G	A	999	11 11 11 11 11 11 11 11	36	0	0	25	20	0	0	25	17	0	0	21	26	0	0	20	21	0	0	27	29	0	0	16	23	0	0	20	16	0	0	23	30	merge_repeat		chromOut
chr5	120023982	A	G	999	11 11 11 11 11 11 11 11	36	0	0	30	17	0	0	25	15	0	0	28	27	0	0	22	21	0	0	31	18	0	0	20	25	0	0	22	14	0	0	22	18
chr5	120398010	G	A	999	11 11 11 11 11 11 11 11	33	0	0	46	2	0	0	35	5	0	0	27	10	0	0	32	8	0	0	39	10	0	0	32	6	0	0	32	6	0	0	29	4	merge_repeat	trfMask	chromOut	simple
chr5	120830912	T	C	999	11 11 11 11 11 11 11 11	49	0	0	34	21	0	0	36	28	0	0	28	22	0	0	44	34	0	0	29	27	0	0	26	29	0	0	29	34	0	0	26	23
chr5	121044017	A	C	999	11 11 11 11 11 11 11 11	37	0	0	13	25	0	0	15	35	0	0	16	24	0	0	27	29	0	0	18	30	0	0	21	20	0	0	13	24	0	0	17	28
chr5	121157239	A	G	999	11 11 11 11 11 11 11 11	29	0	0	18	11	0	0	19	17	0	0	23	9	0	0	28	10	0	0	26	9	0	0	28	8	0	0	16	13	0	0	24	12
chr5	122674491	G	T	999	11 11 11 11 11 11 11 11	37	0	0	28	22	0	0	22	18	0	0	26	31	0	0	22	23	0	0	23	27	0	0	17	20	0	0	29	23	1	0	18	27
chr5	122704076	A	G	999	11 11 11 11 11 11 11 11	38	0	0	18	34	0	0	21	33	0	0	17	37	0	0	14	33	0	0	16	30	0	0	12	26	0	0	17	27	0	0	13	28	merge_repeat		chromOut		nested
chr5	122704100	G	A	999	11 11 11 11 11 11 11 11	41	0	0	34	28	0	0	28	33	0	0	24	39	0	0	24	36	0	0	26	30	0	0	18	23	0	0	25	32	0	0	17	27	merge_repeat		chromOut		nested
chr5	122772909	T	C	999	11 11 11 11 11 11 11 11	44	0	0	27	22	0	0	39	25	0	0	23	28	0	0	29	30	0	0	33	33	0	0	21	23	0	0	39	25	0	0	26	20
chr5	124631595	T	C	999	11 11 11 11 11 11 11 11	21	0	0	14	21	0	0	17	16	0	0	13	22	0	0	17	22	0	0	10	17	0	0	12	9	0	0	18	25	0	0	11	18
chr5	124631596	A	C	999	11 11 11 11 11 11 11 11	21	0	0	15	21	0	0	17	16	0	0	13	22	0	0	17	22	0	0	10	17	0	0	12	9	0	0	18	25	0	0	11	18
chr5	124631601	G	C	999	11 11 11 11 11 11 11 11	20	0	0	14	21	0	0	15	15	0	0	11	22	0	0	15	21	0	0	10	17	0	0	11	9	0	0	17	25	0	0	11	18
chr5	124631762	G	A	999	11 11 11 11 11 11 11 11	30	0	0	20	23	0	0	20	15	0	0	23	25	0	0	21	33	0	0	33	18	0	0	12	18	0	0	20	24	0	0	19	23
chr5	124638248	A	G	999	11 11 11 11 11 11 11 11	20	0	0	20	9	0	0	13	13	0	0	11	9	0	0	16	10	0	0	20	10	0	0	23	5	0	0	21	8	0	0	17	7	merge_repeat		chromOut
chr5	124638290	G	C	999	11 11 11 11 11 11 11 11	30	0	0	25	15	0	0	17	25	0	0	15	20	0	0	23	19	0	0	25	17	0	0	26	23	0	0	29	21	0	0	17	13	merge_repeat		chromOut
chr5	124638339	G	T	999	11 11 11 11 11 11 11 11	38	0	0	23	15	0	0	22	20	0	0	28	18	0	0	30	19	0	0	25	15	0	0	26	21	0	0	35	15	0	0	27	16	merge_repeat		chromOut
chr5	125753204	A	T	999	11 11 11 11 11 11 11 11	25	0	0	20	25	0	0	8	17	0	0	13	25	0	0	8	30	0	0	20	16	0	0	12	32	0	0	13	23	0	0	23	14	merge_repeat	trfMask	chromOut	simple
chr5	126292944	A	T	999	11 11 11 11 11 11 11 11	34	0	0	28	22	0	0	23	17	0	0	25	19	0	0	23	15	1	0	16	21	0	0	18	16	0	0	19	20	0	0	20	20	merge_repeat	trfMask	chromOut	simple
chr5	129106607	A	T	999	11 11 11 11 11 11 11 11	33	0	0	13	20	0	0	18	19	0	0	25	20	0	0	23	23	0	0	18	26	0	0	23	20	0	0	22	19	0	0	19	16	merge_repeat	trfMask	chromOut	simple
chr5	129791088	G	T	999	11 11 11 11 11 11 11 11	39	0	0	17	22	0	0	16	31	0	0	18	25	0	0	16	34	0	0	16	31	0	0	16	27	0	0	9	32	0	0	14	25
chr5	130874269	G	T	999	11 11 11 11 11 11 11 11	31	0	0	16	15	0	0	18	25	0	0	14	21	0	0	16	28	0	0	23	20	0	0	12	22	0	0	13	19	0	0	21	26
chr5	131032898	A	C	999	11 11 11 11 11 11 11 11	48	0	0	31	17	0	0	26	22	0	0	19	37	0	0	24	36	0	0	26	33	0	0	33	20	0	0	24	27	0	0	27	25
chr5	132564209	G	C	999	11 11 11 11 11 11 11 11	27	0	0	28	11	0	0	25	7	0	0	19	8	0	0	26	16	0	0	17	13	0	0	22	8	0	0	21	10	0	0	30	14	merge_repeat				nested
chr5	133497905	C	T	999	11 11 11 11 11 11 11 11	50	0	0	21	29	0	0	42	24	0	0	25	38	0	0	28	34	0	0	25	26	0	0	22	40	0	0	24	27	0	0	30	35	merge_repeat		chromOut		nested
chr5	134156421	A	G	999	11 11 11 11 11 11 11 11	20	0	0	19	21	0	0	21	15	0	0	18	18	0	0	10	11	1	0	17	27	0	0	21	19	0	0	18	9	0	0	10	10	merge_repeat		chromOut
chr5	136176119	G	T	999	11 11 11 11 11 11 11 11	55	0	0	41	35	0	0	43	42	0	0	38	39	0	0	41	42	0	0	40	30	0	0	25	30	0	0	35	32	0	0	31	24	merge_repeat		chromOut
chr5	136176687	T	C	999	11 11 11 11 11 11 11 11	38	0	0	11	29	0	0	25	14	0	0	18	27	0	0	23	28	0	0	27	24	0	0	27	15	0	0	17	25	0	0	20	18	merge_repeat		chromOut
chr5	136727439	A	C	999	11 11 11 11 11 11 11 11	44	0	0	18	34	0	0	26	43	1	0	24	42	0	0	24	38	0	0	18	33	0	0	18	43	0	0	15	29	0	0	17	36	merge_repeat		chromOut	simple
chr5	136727440	G	A	999	11 11 11 11 11 11 11 11	44	0	0	18	33	0	0	26	43	0	0	24	41	0	0	24	38	0	0	18	33	0	0	18	43	0	0	15	29	0	0	17	35	merge_repeat		chromOut	simple
chr5	136779329	T	C	999	11 11 11 11 11 11 11 11	32	0	0	23	24	0	0	17	23	0	0	19	16	0	0	27	16	0	0	24	25	0	0	16	16	0	0	22	20	0	0	25	17	merge_repeat		chromOut		nested
chr5	137132601	C	T	999	11 11 11 11 11 11 11 11	33	0	0	24	21	0	0	19	14	0	0	28	35	0	0	33	23	0	0	27	25	0	0	29	22	0	0	28	24	0	0	22	17	merge_repeat		chromOut
chr5	137132602	A	G	999	11 11 11 11 11 11 11 11	34	0	0	24	20	0	0	20	14	0	0	28	35	0	0	33	23	0	0	27	25	0	0	29	22	0	0	28	24	0	0	22	17	merge_repeat		chromOut
chr5	137132978	T	C	999	11 11 11 11 11 11 11 11	53	0	0	29	25	0	0	36	27	1	0	31	39	0	0	34	37	0	0	32	21	0	0	36	30	0	0	30	28	0	0	33	26	merge_repeat		chromOut	simple
chr5	137133141	A	C	999	11 11 11 11 11 11 11 11	43	0	0	28	15	0	0	36	28	0	0	33	32	0	0	30	35	0	0	32	22	0	0	44	23	0	0	28	20	0	0	33	27	merge_repeat		chromOut	simple
chr5	137152462	A	T	999	11 11 11 11 11 11 11 11	202	0	9	135	126	0	5	151	143	0	5	154	113	0	3	129	121	0	3	132	112	0	2	92	108	0	1	127	130	0	5	136	130	merge_repeat			simple
chr5	137152588	C	A	999	11 11 11 11 11 11 11 11	189	0	0	33	167	0	1	19	169	0	0	31	184	0	0	25	194	0	0	42	178	0	0	40	162	0	0	23	170	0	0	27	190	merge_repeat			simple
chr5	137152790	T	G	999	11 11 11 11 11 11 11 11	105	0	0	37	97	0	0	36	122	0	2	33	94	0	1	33	92	0	0	30	75	0	1	32	76	0	0	37	82	0	1	33	100	merge_repeat			simple
chr5	137162871	C	G	999	11 11 11 11 11 11 11 11	32	0	0	28	22	0	0	34	14	0	0	22	30	0	0	34	23	0	0	34	27	0	0	22	28	0	0	22	25	0	0	21	11
chr5	137162984	G	C	999	11 11 11 11 11 11 11 11	41	0	0	26	28	0	0	29	25	0	0	20	22	0	0	28	19	0	0	28	28	0	0	16	25	0	0	26	27	0	0	32	20
chr5	137162992	A	C	999	11 11 11 11 11 11 11 11	41	0	0	27	26	0	0	29	24	0	0	22	20	0	0	29	18	0	0	25	28	0	0	17	24	0	0	26	25	0	0	30	20
chr5	137177051	A	C	999	11 11 11 11 11 11 11 11	23	0	0	11	20	0	0	8	23	0	0	9	18	0	0	8	19	0	0	11	17	0	0	9	14	0	0	11	18	0	0	9	15
chr5	137177222	C	G	999	11 11 11 11 11 11 11 11	21	0	0	20	14	0	0	17	21	0	0	7	14	0	0	20	28	0	0	23	23	0	0	11	16	0	0	17	28	0	0	15	24
chr5	137177223	T	C	999	11 11 11 11 11 11 11 11	21	0	0	20	14	0	0	17	21	0	0	7	14	0	0	20	28	0	0	23	22	0	0	11	16	0	0	17	28	0	0	15	24
chr5	137177293	A	C	999	11 11 11 11 11 11 11 11	29	0	0	20	14	0	0	16	16	0	0	24	9	0	0	20	16	0	0	31	12	0	0	19	10	0	0	31	24	0	0	22	13
chr5	137177323	A	T	999	11 11 11 11 11 11 11 11	29	0	0	20	11	0	0	21	10	0	0	26	8	0	0	22	11	0	0	28	7	0	0	21	8	0	0	32	17	0	0	24	6
chr5	137187525	A	G	999	11 11 11 11 11 11 11 11	35	0	0	22	23	0	0	28	17	0	0	20	17	0	0	28	18	0	0	23	23	0	0	19	22	0	0	32	19	0	0	18	17
chr5	138310512	A	G	999	11 11 11 11 11 11 11 11	55	0	0	33	30	0	0	24	32	0	0	20	40	0	0	32	32	0	0	27	29	0	0	29	29	0	0	19	41	0	0	16	39
chr5	138684234	C	A	999	11 11 11 11 11 11 11 11	40	0	0	43	13	0	0	36	11	0	0	30	24	0	0	29	22	0	0	22	18	0	0	28	18	0	0	38	12	0	0	25	17	merge_repeat	trfMask	chromOut	simple
chr5	138684238	C	A	999	11 11 11 11 11 11 11 11	40	0	0	44	12	0	0	39	12	0	0	31	22	0	0	29	20	0	0	21	19	0	0	28	18	0	0	42	13	0	0	27	17	merge_repeat	trfMask	chromOut	simple
chr5	138684242	C	A	999	11 11 11 11 11 11 11 11	40	0	0	45	12	0	0	41	11	0	0	30	23	0	0	30	21	0	0	21	19	0	0	28	19	0	0	43	15	0	0	28	18	merge_repeat	trfMask	chromOut	simple
chr5	141563082	C	A	999	11 11 11 11 11 11 11 11	39	0	0	18	25	0	0	27	17	0	0	25	14	0	0	26	14	0	0	24	23	0	0	28	21	0	0	15	24	0	0	24	24	merge_repeat	trfMask	chromOut	simple	nested
chr5	141604527	T	C	999	11 11 11 11 11 11 11 11	54	0	0	31	25	0	0	42	28	0	0	38	24	0	0	32	22	0	0	32	34	0	0	39	27	0	0	31	33	0	0	30	26	merge_repeat		chromOut
chr5	142827958	G	T	999	11 11 11 11 11 11 11 11	42	0	0	27	31	0	0	21	35	1	0	25	52	0	0	23	34	0	0	29	43	0	0	22	34	0	1	18	23	0	1	20	25	merge_repeat		chromOut	simple	nested
chr5	143573730	A	G	999	11 11 11 11 11 11 11 11	39	0	0	17	33	0	0	19	26	0	0	28	30	0	0	20	28	0	0	33	25	0	0	16	23	0	0	24	35	0	0	22	21	merge_repeat		chromOut
chr5	143576783	G	A	999	11 11 11 11 11 11 11 11	21	0	0	7	14	0	0	10	13	0	0	11	12	0	0	9	24	0	0	12	23	0	0	8	17	0	0	7	17	0	0	7	19
chr5	143576798	G	T	999	11 11 11 11 11 11 11 11	24	0	0	11	14	0	0	13	12	0	0	14	10	0	0	10	24	0	0	14	24	0	0	9	15	0	0	10	16	0	0	10	16	merge_repeat		chromOut		nested
chr5	144229063	A	T	999	11 11 11 11 11 11 11 11	28	0	0	15	19	0	0	15	16	0	0	10	18	0	0	13	16	0	0	18	13	0	0	19	12	0	0	14	14	0	0	15	16
chr5	144229085	G	T	999	11 11 11 11 11 11 11 11	28	0	0	17	18	0	0	17	13	0	0	19	16	0	0	15	16	0	0	23	11	0	0	22	12	0	0	16	12	0	0	18	13	merge_repeat		chromOut
chr5	144278887	G	T	999	11 11 11 11 11 11 11 11	20	0	0	11	10	0	0	10	10	1	0	14	12	0	1	17	9	0	0	19	12	0	0	15	11	0	0	15	12	0	0	11	10	merge_repeat		chromOut
chr5	147937592	A	G	999	11 11 11 11 11 11 11 11	39	0	1	20	18	0	1	21	18	0	0	23	20	1	0	29	18	0	0	27	27	1	0	22	18	0	0	32	18	0	0	23	19	merge_repeat	trfMask	chromOut	simple
chr5	148442567	A	C	999	11 11 11 11 11 11 11 11	49	0	0	25	33	0	0	21	42	0	0	32	32	0	0	15	36	0	0	14	35	0	0	31	39	0	0	27	28	0	0	19	34
chr5	148442596	A	T	999	11 11 11 11 11 11 11 11	31	0	0	18	18	0	0	13	23	0	0	21	20	0	0	15	22	0	0	9	24	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442597	A	C	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	24	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442598	A	T	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	24	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442600	C	T	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	23	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442602	A	T	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	24	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442603	C	T	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	24	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442604	G	T	999	11 11 11 11 11 11 11 11	31	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	24	0	0	9	25	0	0	26	23	0	0	14	17	0	0	13	21
chr5	148442606	C	G	999	11 11 11 11 11 11 11 11	32	0	0	18	20	0	0	13	24	0	0	21	20	0	0	15	23	0	0	9	24	0	0	26	23	0	0	14	18	0	0	13	22
chr5	148475495	G	T	999	11 11 11 11 11 11 11 11	30	0	0	11	19	0	0	27	18	0	0	21	27	0	0	28	18	0	0	14	33	0	0	21	24	0	0	34	22	0	0	19	11	merge_repeat		chromOut		nested
chr5	148475578	C	T	999	11 11 11 11 11 11 11 11	45	0	0	32	21	0	0	48	20	0	0	40	24	0	0	40	14	0	0	30	29	0	0	30	23	0	0	44	21	0	0	27	18	merge_repeat		chromOut		nested
chr5	148475745	C	T	999	11 11 11 11 11 11 11 11	36	0	0	18	19	0	0	24	19	0	0	20	16	0	0	11	31	0	0	27	17	0	0	30	20	0	0	27	25	0	0	19	17	merge_repeat			simple
chr5	148475753	G	C	999	11 11 11 11 11 11 11 11	35	0	0	20	17	0	0	24	22	0	0	21	19	0	0	11	31	0	0	24	16	0	0	31	20	0	0	29	28	0	0	19	16	merge_repeat			simple
chr5	148481961	A	G	999	11 11 11 11 11 11 11 11	41	0	0	26	29	0	0	32	28	0	0	33	23	0	0	35	31	0	0	36	26	0	0	19	22	0	0	27	30	0	0	26	36
chr5	149281786	A	T	999	11 11 11 11 11 11 11 11	22	0	0	11	14	0	0	28	19	0	0	13	19	0	0	25	17	0	0	17	19	0	0	14	8	0	0	16	14	0	0	17	14	merge_repeat	trfMask	chromOut	simple
chr5	149298348	G	A	999	11 11 11 11 11 11 11 11	56	0	0	43	35	0	0	37	29	0	0	32	24	0	0	63	27	0	0	48	26	0	0	48	34	0	0	51	23	0	0	46	24
chr5	149886415	T	C	999	11 11 11 11 11 11 11 11	44	0	0	21	31	0	0	20	24	0	0	23	28	0	0	22	28	0	0	23	31	0	0	30	23	0	0	27	26	0	0	27	27	merge_repeat		chromOut
chr5	150195669	C	A	999	11 11 11 11 11 11 11 11	26	0	0	24	10	0	0	21	8	0	0	26	9	0	0	22	17	0	0	19	17	0	0	15	11	0	0	19	10	0	0	21	13
chr5	150241191	G	T	999	11 11 11 11 11 11 11 11	43	0	0	29	27	0	0	30	22	1	0	21	23	0	0	27	24	0	0	18	25	1	0	26	28	0	0	22	22	0	0	26	35	merge_repeat	trfMask	chromOut	simple
chr5	150263388	A	G	999	11 11 11 11 11 11 11 11	32	0	0	18	16	0	0	12	22	0	0	15	28	0	0	23	23	0	0	17	25	0	0	17	19	0	0	14	18	0	0	16	19
chr5	150409877	A	G	999	11 11 11 11 11 11 11 11	44	0	0	35	20	0	0	42	18	0	0	28	16	0	0	47	27	0	0	44	21	0	0	42	14	0	0	30	17	0	0	32	22
chr5	151523261	C	T	999	11 11 11 11 11 11 11 11	37	0	1	20	16	0	0	32	21	0	0	29	17	0	0	21	28	0	0	24	27	0	0	25	22	0	0	25	19	0	0	25	22	merge_repeat		chromOut		nested