chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr4	3224443	G	A	999	11 11 11 11 11 11 11 11	27	0	1	15	22	0	0	5	22	0	0	9	19	0	0	13	16	0	0	17	21	0	0	6	25	0	1	13	30	0	0	18	14	merge_repeat					segmentDup
chr4	3224445	G	C	999	11 11 11 11 11 11 11 11	27	0	1	15	22	0	0	5	22	0	0	9	19	0	0	13	16	0	0	17	22	0	0	6	25	0	1	13	30	0	0	18	15	merge_repeat					segmentDup
chr4	5785177	T	C	999	11 11 11 11 11 11 11 11	65	0	0	33	32	0	0	42	32	0	0	37	46	0	0	47	39	0	0	38	32	0	0	36	36	0	0	36	37	0	0	50	33
chr4	6713163	G	A	999	11 11 11 11 11 11 11 11	51	0	0	35	36	0	0	49	22	0	0	54	30	0	0	44	41	0	0	27	30	0	0	31	20	0	0	45	27	0	0	38	24
chr4	7505426	A	G	999	11 11 11 11 11 11 11 11	45	0	0	27	35	0	0	25	37	0	0	27	32	0	0	28	26	0	0	36	29	0	0	22	23	0	0	35	24	0	0	25	28	merge_repeat		chromOut
chr4	10701713	A	G	999	11 11 11 11 11 11 11 11	51	0	0	31	23	0	0	35	30	1	0	33	24	0	0	37	29	0	0	28	25	0	0	30	21	0	0	40	32	0	0	50	28
chr4	13843142	A	C	999	11 11 11 11 11 11 11 11	35	0	0	33	22	0	0	27	15	0	0	37	16	0	0	37	23	0	0	31	21	0	0	30	18	0	0	20	15	0	0	35	15	merge_repeat		chromOut
chr4	14603300	A	T	999	11 11 11 11 11 11 11 11	35	0	0	21	24	0	0	24	24	0	0	9	29	0	0	27	25	0	0	25	24	0	0	10	25	0	0	21	23	0	0	19	19	merge_repeat		chromOut
chr4	15265028	A	G	999	11 11 11 11 11 11 11 11	57	0	0	27	30	0	0	37	34	0	0	29	31	0	0	39	34	0	0	35	27	0	0	38	24	0	0	39	40	0	0	35	39
chr4	19200781	G	A	999	11 11 11 11 11 11 11 11	43	0	0	35	29	0	0	43	33	0	0	24	36	0	0	23	32	0	0	37	26	0	0	20	23	0	0	31	27	0	0	21	24	merge_repeat		chromOut		nested
chr4	20582134	T	G	999	11 11 11 11 11 11 11 11	31	0	0	18	15	0	0	24	14	0	0	23	16	0	0	18	26	0	0	30	15	0	0	19	12	0	0	21	14	0	0	30	16	merge_repeat		chromOut
chr4	21637189	T	A	999	11 11 11 11 11 11 11 11	31	0	0	25	17	0	0	13	27	0	0	22	20	0	0	15	25	0	0	12	35	0	0	12	23	0	0	17	19	0	0	11	20	merge_repeat	trfMask	chromOut	simple	nested
chr4	23010035	A	G	999	11 11 11 11 11 11 11 11	46	0	0	27	26	0	0	30	41	0	0	18	28	0	0	31	27	0	0	39	36	0	0	24	27	0	0	34	28	0	0	28	29	merge_repeat		chromOut
chr4	23496604	A	G	999	11 11 11 11 11 11 11 11	51	0	0	43	35	0	0	34	34	0	0	27	24	0	0	36	33	0	0	35	24	0	0	43	38	0	0	41	38	0	0	26	34
chr4	29447822	A	G	999	11 11 11 11 11 11 11 11	59	0	0	45	41	0	0	36	33	0	0	26	33	0	0	28	33	0	0	31	30	0	0	40	21	0	0	39	31	0	0	38	32	merge_repeat		chromOut		nested
chr4	30414094	C	A	999	11 11 11 11 11 11 11 11	26	0	0	20	9	0	0	19	7	0	0	25	8	0	0	29	5	0	0	33	7	0	0	25	4	0	0	23	7	0	1	19	6	merge_repeat		chromOut		nested
chr4	30416851	A	G,C	999	12 12 12 12 12 12 12 12	21	0	0	18	6	0	0	16	7	0	0	22	10	0	0	19	5	0	0	33	9	0	0	21	9	0	0	20	9	0	0	12	9	merge_repeat	trfMask	chromOut	simple
chr4	33132901	A	C	999	11 11 11 11 11 11 11 11	29	0	0	16	35	0	0	13	31	0	0	16	34	0	0	29	17	0	0	7	25	0	0	19	28	0	0	9	20	0	0	22	28	merge_repeat		chromOut	simple
chr4	33920244	T	A	999	11 11 11 11 11 11 11 11	35	0	0	4	31	0	0	3	32	0	0	7	33	0	0	12	35	0	0	6	30	0	0	7	31	0	0	4	47	0	0	4	32
chr4	34266088	T	G	999	11 11 11 11 11 11 11 11	47	0	0	32	23	0	0	33	20	0	0	36	23	0	0	38	22	0	0	42	28	1	1	34	17	0	0	32	16	0	0	33	14	merge_repeat		chromOut
chr4	34266092	C	A	999	11 11 11 11 11 11 11 11	47	0	0	30	23	0	0	33	19	0	0	34	21	0	0	38	23	0	0	41	26	1	0	33	17	0	0	32	15	0	0	33	14	merge_repeat		chromOut
chr4	34266100	G	A	999	11 11 11 11 11 11 11 11	44	0	1	29	23	0	0	32	15	0	0	34	21	0	0	38	23	0	0	43	25	1	0	33	13	0	0	30	14	0	0	36	13	merge_repeat		chromOut
chr4	34266109	A	C	999	11 11 11 11 11 11 11 11	38	0	0	29	23	0	0	31	12	0	0	34	22	0	0	35	21	0	0	44	24	0	0	34	13	0	0	25	13	0	0	35	12	merge_repeat		chromOut
chr4	34266989	T	C	999	11 11 11 11 11 11 11 11	26	0	0	18	11	0	0	30	12	0	0	33	14	0	0	17	14	0	0	15	12	0	1	19	9	0	0	13	13	0	0	22	12	merge_repeat		chromOut
chr4	34283821	C	G	999	11 11 11 11 11 11 11 11	35	0	0	9	28	0	0	7	28	0	0	13	26	0	0	18	35	0	0	14	23	0	0	12	33	0	0	7	33	0	0	8	31	merge_repeat		chromOut		nested
chr4	34283823	C	T	999	11 11 11 11 11 11 11 11	35	0	0	9	28	0	0	7	28	0	0	13	26	0	0	18	34	0	0	14	23	0	0	12	32	0	0	7	33	0	0	8	31	merge_repeat		chromOut		nested
chr4	34283824	C	T	999	11 11 11 11 11 11 11 11	35	0	0	9	28	0	0	7	28	0	0	13	26	0	0	18	34	0	0	14	23	0	0	12	32	0	0	7	33	0	0	8	31	merge_repeat		chromOut		nested
chr4	34283826	C	A	999	11 11 11 11 11 11 11 11	35	0	0	9	28	0	0	7	28	0	0	13	26	0	0	18	34	0	0	14	23	0	0	12	32	0	0	7	33	0	0	8	32	merge_repeat		chromOut		nested
chr4	34283832	G	T	999	11 11 11 11 11 11 11 11	37	0	0	9	29	0	0	8	30	0	0	14	27	0	0	20	35	0	0	14	23	0	0	14	34	0	0	8	33	0	0	8	33	merge_repeat		chromOut		nested
chr4	34283833	C	T	999	11 11 11 11 11 11 11 11	37	0	0	9	29	0	0	8	30	0	0	14	27	0	0	20	35	0	0	14	23	0	0	14	34	0	0	8	33	0	0	8	33	merge_repeat		chromOut		nested
chr4	36104848	C	T	999	11 11 11 11 11 11 11 11	60	0	0	42	35	0	0	49	35	0	0	33	31	0	0	31	40	0	0	31	32	0	0	42	30	0	0	36	37	0	0	35	25
chr4	36654027	T	C	999	11 11 11 11 11 11 11 11	29	0	0	10	19	0	0	7	24	0	0	12	34	0	0	12	26	0	0	13	30	0	0	14	28	0	0	14	24	0	0	9	23	merge_repeat		chromOut		nested
chr4	37130958	T	C	999	11 11 11 11 11 11 11 11	66	0	0	53	43	0	0	43	37	0	0	43	40	0	0	43	39	0	0	47	32	0	0	37	29	0	1	42	33	0	0	40	46	merge_repeat		chromOut
chr4	37534414	T	C	999	11 11 11 11 11 11 11 11	33	0	0	16	32	0	0	17	36	0	0	20	24	0	0	21	31	0	0	22	24	0	0	16	17	0	0	25	26	0	0	18	16	merge_repeat		chromOut		nested
chr4	38248996	A	C	999	11 11 11 11 11 11 11 11	23	0	0	13	16	0	0	10	13	0	0	13	15	0	0	12	21	0	0	18	21	0	0	17	13	0	0	11	14	0	0	7	16	merge_repeat	trfMask	chromOut	simple	nested
chr4	43900414	T	G	999	11 11 11 11 11 11 11 11	55	0	0	38	36	0	0	32	40	0	0	44	36	0	0	32	36	0	0	32	27	0	0	26	29	0	0	48	36	0	0	27	29
chr4	45580120	T	C	999	11 11 11 11 11 11 11 11	39	0	0	22	26	0	0	15	29	0	0	21	31	0	0	29	42	0	0	24	30	0	0	24	35	0	0	16	23	0	0	14	38	merge_repeat		chromOut		nested
chr4	46140999	C	A	999	11 11 11 11 11 11 11 11	24	0	0	12	15	0	0	13	18	0	0	7	19	0	0	20	23	0	0	11	20	0	0	19	22	0	0	13	21	0	0	10	14	merge_repeat		chromOut
chr4	46609487	T	C	999	11 11 11 11 11 11 11 11	37	0	0	16	21	0	0	20	20	0	0	28	30	0	0	25	27	0	0	27	23	0	0	19	30	0	0	25	25	0	0	21	23
chr4	48865674	C	T	999	11 11 11 11 11 11 11 11	53	0	0	26	31	0	0	44	41	0	0	36	31	0	0	27	39	0	0	30	43	0	0	20	33	0	0	40	31	0	0	30	31	merge_repeat		chromOut		nested
chr4	49934261	T	C	999	11 11 11 11 11 11 11 11	33	0	0	19	28	0	0	17	37	0	0	17	25	0	0	13	29	0	0	19	32	0	0	17	16	0	0	17	28	0	0	18	31
chr4	51176711	T	G	999	11 11 11 11 11 11 11 11	44	0	0	37	19	0	0	50	17	0	0	35	27	0	0	48	22	0	0	33	28	0	0	31	13	0	0	44	24	0	0	33	20	merge_repeat	trfMask	chromOut	simple
chr4	55631527	T	C	999	11 11 11 11 11 11 11 11	33	0	0	20	18	0	0	21	24	0	0	11	22	0	0	23	23	0	0	26	34	0	0	17	24	0	1	27	19	0	0	16	31
chr4	57981217	T	G	530	11 11 11 11 11 11 11 11	24	0	0	18	16	0	0	11	13	0	0	24	13	0	0	25	12	0	0	20	17	0	0	25	11	0	0	17	18	0	0	30	20	merge_repeat		chromOut		nested
chr4	58929957	A	C	999	11 11 11 11 11 11 11 11	36	0	0	22	14	0	0	21	20	0	0	23	23	0	0	33	21	0	0	27	24	0	0	33	25	0	0	30	28	0	0	25	21	merge_repeat		chromOut		nested
chr4	60583522	A	T	999	11 11 11 11 11 11 11 11	27	0	0	14	19	0	0	10	17	0	0	14	24	0	0	21	24	0	0	19	26	0	0	17	19	0	0	16	22	0	0	14	26	merge_repeat	trfMask	chromOut	simple		segmentDup
chr4	60583525	A	T	999	11 11 11 11 11 11 11 11	27	0	0	14	19	0	0	10	17	0	0	14	23	0	0	20	21	0	0	19	27	0	0	16	19	0	0	16	22	0	0	14	25	merge_repeat	trfMask	chromOut	simple		segmentDup
chr4	61981547	A	C	999	11 11 11 11 11 11 11 11	40	0	0	23	17	0	0	28	20	0	0	23	27	0	0	20	37	0	0	24	33	0	0	28	20	0	0	14	30	0	0	19	28	merge_repeat		chromOut		nested
chr4	62427515	A	G	999	11 11 11 11 11 11 11 11	29	0	1	24	17	1	1	21	26	0	0	19	23	0	0	19	28	0	0	17	19	0	0	11	18	0	0	21	15	0	0	17	14
chr4	64003995	A	G	999	11 11 11 11 11 11 11 11	21	0	0	17	6	0	0	18	6	0	0	19	4	0	0	19	8	0	0	19	5	0	0	21	7	0	0	20	1	0	0	21	8
chr4	65480221	A	C	999	11 11 11 11 11 11 11 11	23	0	0	26	9	0	0	21	7	0	0	26	12	0	0	14	9	0	0	31	13	0	0	24	9	0	0	31	6	0	0	25	7	merge_repeat	trfMask	chromOut	simple
chr4	66851552	T	G	999	11 11 11 11 11 11 11 11	30	0	0	18	23	0	0	33	27	0	0	15	22	0	0	25	27	0	0	25	31	0	0	29	23	0	0	16	14	0	0	21	15
chr4	67157079	A	G	999	11 11 11 11 11 11 11 11	25	0	0	11	16	0	0	9	18	0	0	11	18	0	0	23	32	0	0	18	19	0	0	14	19	0	0	13	12	0	0	14	18	merge_repeat		chromOut		nested
chr4	69113163	A	C	999	11 11 11 11 11 11 11 11	46	0	0	24	43	0	0	32	34	0	0	32	28	0	0	23	23	0	0	31	35	0	0	22	48	0	0	26	39	0	0	27	30	merge_repeat		chromOut
chr4	69122217	A	T	999	11 11 11 11 11 11 11 11	51	0	0	28	38	0	0	41	36	0	0	29	22	0	0	43	31	0	0	29	27	0	0	35	37	0	0	26	37	0	0	37	24
chr4	69911643	A	C	999	11 11 11 11 11 11 11 11	29	0	0	18	27	0	0	11	18	0	0	16	24	0	0	21	20	0	0	19	20	0	0	10	24	0	0	20	23	0	0	15	17	merge_repeat		chromOut
chr4	72356063	C	A	999	11 11 11 11 11 11 11 11	49	1	0	29	31	0	0	22	35	0	0	24	30	0	0	24	36	0	0	26	23	0	0	28	21	0	0	26	25	0	0	27	26	merge_repeat		chromOut		nested
chr4	72356102	A	T	999	11 11 11 11 11 11 11 11	39	0	0	22	28	0	0	21	39	0	0	17	22	0	0	18	24	0	0	21	21	0	0	25	24	0	0	26	25	0	0	21	26	merge_repeat		chromOut		nested
chr4	72965575	G	T	999	11 11 11 11 11 11 11 11	25	0	0	20	17	0	0	19	13	0	0	14	16	0	0	16	12	0	0	8	21	1	0	18	17	0	0	18	14	0	0	11	14	merge_repeat		chromOut	simple
chr4	75499117	T	G	999	11 11 11 11 11 11 11 11	35	0	0	19	27	0	0	27	29	0	0	28	23	0	0	25	17	0	0	19	29	1	0	17	17	0	0	24	24	0	0	20	33	merge_repeat		chromOut
chr4	76694149	T	C	999	11 11 11 11 11 11 11 11	50	0	0	35	29	0	0	31	36	0	0	43	28	0	0	33	28	0	0	31	38	0	0	22	28	0	0	31	29	0	0	29	28
chr4	77712400	A	G	999	11 11 11 11 11 11 11 11	25	1	0	17	15	1	0	13	19	1	0	4	26	1	0	5	24	0	0	7	22	1	0	9	15	1	0	7	17	0	0	12	17	merge_repeat		chromOut
chr4	77732422	G	A	999	11 11 11 11 11 11 11 11	34	0	0	33	1	0	0	32	10	0	0	39	6	0	0	31	9	0	0	36	11	0	0	34	8	0	0	34	17	0	0	27	8	merge_repeat		chromOut		nested
chr4	77732423	A	G	999	11 11 11 11 11 11 11 11	33	0	0	32	1	0	0	32	10	0	0	39	6	0	0	31	9	0	0	36	11	0	0	34	8	0	0	34	17	0	0	26	8	merge_repeat		chromOut		nested
chr4	77732424	A	G	999	11 11 11 11 11 11 11 11	34	0	0	33	1	0	0	32	10	0	0	39	6	0	0	31	9	0	0	36	11	0	0	34	8	0	0	34	17	0	0	27	8	merge_repeat		chromOut		nested
chr4	78619733	C	T	999	11 11 11 11 11 11 11 11	31	0	0	22	18	0	0	21	23	0	0	20	13	0	0	27	18	0	0	20	11	0	1	30	20	0	2	18	24	1	1	12	17	merge_repeat	trfMask	chromOut	simple
chr4	79062837	T	C	999	11 11 11 11 11 11 11 11	46	0	0	30	25	0	0	29	43	0	0	23	23	0	0	30	31	0	0	31	25	0	0	28	33	0	0	23	32	0	0	28	30	merge_repeat		chromOut
chr4	79143173	C	T	999	11 11 11 11 11 11 11 11	24	0	0	22	7	0	0	20	12	0	0	22	13	1	0	22	10	0	0	17	9	0	0	20	7	0	0	20	4	1	0	12	12	merge_repeat		chromOut	simple	nested
chr4	79143181	G	T	999	11 11 11 11 11 11 11 11	24	1	0	22	8	0	0	17	9	0	1	23	13	0	0	20	8	0	0	17	10	1	1	19	7	0	0	20	4	1	0	13	10	merge_repeat		chromOut	simple	nested
chr4	80135438	A	G	999	11 11 11 11 11 11 11 11	33	0	0	17	24	0	0	18	24	0	0	17	29	0	0	18	22	0	0	19	14	0	0	21	27	0	0	29	18	0	0	18	19	merge_repeat		chromOut
chr4	81250738	A	C	999	11 11 11 11 11 11 11 11	51	0	0	31	21	0	0	35	28	0	0	22	36	0	0	37	29	0	0	34	40	0	0	28	35	0	0	31	31	0	0	26	25
chr4	81763556	T	G	999	11 11 11 11 11 11 11 11	42	0	0	25	44	0	0	19	27	0	0	27	26	0	0	24	32	0	1	25	25	0	0	19	35	0	0	18	24	0	0	27	26	merge_repeat		chromOut
chr4	85910730	T	C	999	11 11 11 11 11 11 11 11	49	0	0	30	19	0	0	45	25	0	0	49	28	0	0	42	24	0	0	38	31	0	0	41	24	0	0	36	25	0	0	41	24
chr4	87153342	C	T	999	11 11 11 11 11 11 11 11	39	0	0	18	21	0	0	25	25	0	0	17	29	0	0	28	27	0	0	21	35	0	0	23	30	0	0	19	23	0	0	21	28	merge_repeat		chromOut		nested
chr4	87214617	T	G	999	11 11 11 11 11 11 11 11	31	0	0	21	13	0	0	27	15	0	0	27	12	0	0	32	12	0	0	30	19	0	0	26	16	0	0	16	15	0	0	20	15	merge_repeat	trfMask	chromOut	simple
chr4	88304317	C	T	999	11 11 11 11 11 11 11 11	56	0	0	30	26	1	0	40	43	0	0	28	28	0	0	39	42	0	0	32	36	0	0	31	37	0	0	34	36	0	0	34	32	merge_repeat		chromOut		nested
chr4	89312097	T	G	999	11 11 11 11 11 11 11 11	48	0	0	33	19	0	0	24	33	0	0	31	26	0	0	32	32	0	0	36	35	0	0	22	31	0	0	32	16	0	0	32	27
chr4	89349982	G	C	999	11 11 11 11 11 11 11 11	52	0	0	34	46	0	0	19	40	0	0	29	28	0	0	27	29	0	0	33	21	0	0	24	29	0	0	26	31	0	0	20	32
chr4	89365481	C	G	999	11 11 11 11 11 11 11 11	38	0	0	20	18	0	0	31	21	0	0	19	22	0	0	24	18	0	0	20	18	0	0	20	24	0	0	28	28	0	0	28	26
chr4	93224101	A	T	999	11 11 11 11 11 11 11 11	35	0	0	19	25	0	0	24	29	0	0	30	27	0	0	25	45	0	0	38	29	0	0	21	31	0	0	18	27	0	0	13	22	merge_repeat	trfMask	chromOut	simple	nested
chr4	96206971	C	A	999	11 11 11 11 11 11 11 11	45	0	0	32	20	0	0	32	17	0	0	26	25	1	0	27	21	0	1	24	25	0	0	24	22	0	0	39	25	0	0	31	14	merge_repeat		chromOut		nested
chr4	99877142	T	A	999	11 11 11 11 11 11 11 11	48	0	0	32	30	0	1	44	34	0	0	41	34	0	0	42	29	0	0	29	28	0	0	27	21	0	0	36	29	0	0	41	34	merge_repeat			simple
chr4	99884265	T	G	999	11 11 11 11 11 11 11 11	40	0	0	21	25	0	0	27	31	0	0	23	17	0	0	34	29	0	0	45	29	0	0	25	26	0	0	24	38	0	0	23	30	merge_repeat		chromOut
chr4	99884276	T	G	999	11 11 11 11 11 11 11 11	36	0	0	16	26	0	0	27	29	0	0	21	15	0	0	34	28	0	0	44	31	0	0	28	27	0	0	27	38	0	0	23	30	merge_repeat		chromOut
chr4	101559369	A	C	999	11 11 11 11 11 11 11 11	32	0	0	16	16	0	0	12	20	0	0	18	23	0	0	22	21	0	0	21	32	0	0	13	21	0	0	16	21	1	0	16	22	merge_repeat	trfMask	chromOut	simple
chr4	103597857	T	C	999	11 11 11 11 11 11 11 11	37	0	0	20	17	0	0	22	22	0	0	27	22	0	0	25	24	0	0	29	24	0	0	31	27	1	0	24	20	0	0	26	20	merge_repeat		chromOut		nested
chr4	106476929	C	A	999	11 11 11 11 11 11 11 11	32	0	0	26	6	0	0	32	14	0	0	40	22	0	0	30	18	0	0	31	20	0	0	32	15	0	0	30	14	0	0	37	11
chr4	106714038	T	A	999	11 11 11 11 11 11 11 11	21	0	0	22	7	0	0	22	4	0	0	20	3	0	0	30	10	0	0	21	9	0	0	26	4	0	0	17	4	0	0	28	1
chr4	106907412	A	G	999	11 11 11 11 11 11 11 11	29	0	0	17	16	0	0	16	22	0	0	12	22	0	0	23	27	0	0	18	16	0	0	17	17	0	0	21	17	0	0	12	17
chr4	108554658	G	C	999	11 11 11 11 11 11 11 11	71	0	0	46	27	0	0	34	37	0	0	59	36	0	0	45	29	0	0	52	45	0	0	38	44	0	0	36	37	0	0	43	39	merge_repeat	trfMask	chromOut	simple
chr4	109285545	G	A	999	11 11 11 11 11 11 11 11	51	0	0	41	26	0	0	48	30	1	0	31	30	0	0	30	38	0	0	31	20	0	0	37	18	0	0	44	29	0	0	26	37	merge_repeat		chromOut
chr4	109874495	A	G	999	11 11 11 11 11 11 11 11	53	0	0	32	36	0	0	45	43	0	0	49	34	0	0	42	27	0	0	31	22	0	0	47	35	0	0	43	34	0	0	32	43
chr4	110871642	C	A	999	11 11 11 11 11 11 11 11	20	0	0	22	9	0	0	16	8	0	0	14	11	0	0	16	8	0	0	21	11	0	0	14	11	0	0	14	8	0	0	12	8	merge_repeat		chromOut
chr4	111999649	T	A	999	11 11 11 11 11 11 11 11	43	0	0	23	21	0	0	32	29	0	0	16	27	0	0	30	31	0	0	24	25	0	0	17	27	0	0	26	28	0	0	24	26	merge_repeat		chromOut		nested
chr4	115635335	T	G	999	11 11 11 11 11 11 11 11	22	0	0	19	10	0	0	20	15	0	0	12	10	0	0	17	10	0	0	24	13	0	0	16	12	0	0	21	5	0	0	23	9	merge_repeat	trfMask	chromOut	simple
chr4	118759784	A	C	999	11 11 11 11 11 11 11 11	26	0	0	22	11	0	0	30	11	0	0	16	10	0	0	27	14	0	0	21	15	0	0	23	12	0	0	20	13	0	0	19	8	merge_repeat	trfMask	chromOut	simple	nested
chr4	119557835	A	C	999	11 11 11 11 11 11 11 11	47	0	0	33	15	0	0	30	17	0	0	37	11	0	0	53	30	0	0	40	27	0	0	41	30	0	0	38	31	0	0	37	26
chr4	124296070	T	A	999	11 11 11 11 11 11 11 11	22	0	0	28	3	0	0	31	5	0	0	18	4	0	0	31	5	0	0	35	10	0	0	25	3	0	0	39	7	0	0	31	2	merge_repeat		chromOut
chr4	124654566	T	G	999	11 11 11 11 11 11 11 11	46	0	0	19	27	0	0	46	40	0	0	35	26	0	0	47	30	0	0	36	34	0	0	27	28	0	0	42	35	0	0	26	24
chr4	126225905	C	A	999	11 11 11 11 11 11 11 11	38	0	0	20	19	0	0	21	17	0	0	23	24	0	0	19	28	0	0	23	29	0	0	30	25	0	0	21	30	0	0	18	26	merge_repeat		chromOut
chr4	126225910	C	A	999	11 11 11 11 11 11 11 11	39	0	0	19	20	0	0	23	16	0	0	24	23	0	0	19	26	0	0	23	29	0	0	30	26	0	0	21	29	0	0	18	23	merge_repeat		chromOut
chr4	127398974	T	C	999	11 11 11 11 11 11 11 11	50	0	0	22	30	0	0	27	23	0	0	24	32	0	0	26	28	0	0	26	37	0	0	27	32	0	0	29	24	0	0	25	39
chr4	128231191	A	C	999	11 11 11 11 11 11 11 11	35	0	0	20	24	0	0	18	39	0	0	22	27	0	0	23	25	0	0	19	31	0	0	17	30	0	0	19	16	0	0	21	19
chr4	129003123	T	C	999	11 11 11 11 11 11 11 11	44	0	0	21	24	0	0	24	23	0	0	23	28	0	0	36	30	0	0	28	27	0	0	22	30	0	0	20	28	0	0	18	26	merge_repeat		chromOut
chr4	130125537	T	G	999	11 11 11 11 11 11 11 11	38	0	0	24	18	0	0	21	28	0	0	32	28	0	0	35	28	0	0	35	29	0	0	20	18	0	0	31	24	0	0	23	21
chr4	130570853	T	C	999	11 11 11 11 11 11 11 11	21	0	0	4	27	0	0	12	17	0	0	12	16	0	0	13	19	0	0	8	17	0	0	11	13	0	0	16	18	0	0	7	14
chr4	130577765	G	A	999	11 11 11 11 11 11 11 11	25	0	0	34	7	0	0	21	12	0	0	25	9	0	0	23	7	0	0	30	11	0	0	34	5	0	0	27	6	0	0	19	6
chr4	130577783	G	T	999	11 11 11 11 11 11 11 11	29	0	0	30	4	0	0	22	14	0	0	22	7	0	0	30	10	0	0	30	14	0	0	35	7	0	0	25	9	0	0	26	10
chr4	130577817	T	G	999	11 11 11 11 11 11 11 11	29	0	0	22	10	0	0	22	23	0	0	22	7	0	0	26	14	0	0	36	16	0	0	33	14	0	0	21	18	0	0	25	20	merge_repeat		chromOut
chr4	130577861	G	A	999	11 11 11 11 11 11 11 11	23	0	0	17	10	0	0	22	21	0	0	18	5	0	0	24	16	0	0	37	20	0	0	29	15	0	1	17	22	0	0	26	16	merge_repeat		chromOut
chr4	131581477	G	A	999	11 11 11 11 11 11 11 11	42	0	0	16	31	0	0	16	26	0	0	21	33	0	0	27	35	0	0	28	38	0	0	27	31	0	0	16	29	0	0	20	34	merge_repeat	trfMask	chromOut	simple	nested
chr4	132452045	A	G	999	11 11 11 11 11 11 11 11	49	0	0	32	34	0	0	36	32	0	0	19	30	0	0	38	28	0	0	34	34	0	0	22	29	0	0	32	19	0	0	26	23
chr4	133943571	C	A	999	11 11 11 11 11 11 11 11	20	0	0	15	12	0	0	19	7	0	0	15	8	0	0	12	8	0	0	17	13	0	0	11	11	0	0	10	12	0	0	14	12	merge_repeat		chromOut		nested
chr4	134599447	A	C	999	11 11 11 11 11 11 11 11	32	0	0	21	22	0	0	18	14	0	0	24	23	0	0	26	24	0	0	31	26	0	0	23	15	0	0	20	21	0	0	18	22
chr4	138652073	G	T	999	11 11 11 11 11 11 11 11	31	0	0	23	22	0	0	27	27	0	0	31	23	0	0	32	26	0	0	27	21	0	0	21	10	0	0	27	15	0	0	21	19
chr4	139143546	T	A	999	11 11 11 11 11 11 11 11	40	0	0	17	24	0	0	21	24	0	0	27	20	0	0	26	22	0	0	14	26	0	0	33	20	0	0	19	23	0	0	20	24	merge_repeat	trfMask	chromOut	simple
chr4	139189636	A	C	999	11 11 11 11 11 11 11 11	34	0	0	18	34	0	0	10	24	0	0	19	29	0	0	23	25	0	0	31	25	0	0	16	29	0	0	17	28	0	0	20	20	merge_repeat		chromOut
chr4	140484674	T	A	999	11 11 11 11 11 11 11 11	39	0	0	23	16	0	0	33	16	0	0	21	23	0	0	26	28	0	0	47	30	0	0	32	21	0	0	29	16	0	0	25	23	merge_repeat	trfMask	chromOut	simple
chr4	140982175	T	C	999	11 11 11 11 11 11 11 11	38	0	0	31	24	0	0	43	28	0	0	20	21	0	0	31	29	0	0	26	30	0	0	31	22	0	0	24	14	0	0	32	28
chr4	142003021	A	C	999	11 11 11 11 11 11 11 11	36	0	0	26	11	0	0	21	15	0	0	21	17	0	0	23	14	0	0	27	14	0	0	33	15	0	0	27	15	0	0	23	17	merge_repeat		chromOut
chr4	142397828	T	A	999	11 11 11 11 11 11 11 11	21	0	0	22	4	0	0	26	5	0	0	18	5	0	0	31	5	0	0	19	6	0	0	22	2	0	0	16	5	0	0	26	12	merge_repeat		chromOut	simple
chr4	144637122	A	G	999	11 11 11 11 11 11 11 11	42	0	0	25	17	0	0	28	23	0	0	25	18	0	0	16	29	0	0	35	15	0	0	27	15	0	0	24	19	0	0	33	17	merge_repeat		chromOut		nested
chr4	145294217	C	G	999	11 11 11 11 11 11 11 11	29	0	1	20	27	0	0	17	31	0	0	17	24	0	0	22	37	0	1	16	31	0	0	10	19	0	0	13	27	0	0	19	22	merge_repeat	trfMask	chromOut	simple	nested
chr4	145777518	A	G	389	11 11 11 11 11 11 11 11	26	0	0	13	19	0	0	11	17	0	0	11	25	1	0	7	31	0	0	7	33	0	1	6	20	0	0	6	20	1	0	16	22	merge_repeat					segmentDup
chr4	145808676	A	G	241	11 11 11 11 11 11 11 11	49	0	0	36	30	0	1	32	21	0	0	21	44	0	0	23	26	0	0	27	34	0	0	25	29	0	0	28	41	0	0	20	31	merge_repeat					segmentDup
chr4	145847496	T	G	916	11 11 11 11 11 11 11 11	22	0	0	4	32	0	0	6	16	0	0	7	24	0	0	8	28	0	1	1	23	0	0	2	25	0	1	7	22	0	1	5	22	merge_repeat		chromOut			segmentDup
chr4	145847501	A	G	904	11 11 11 11 11 11 11 11	22	0	0	4	31	0	0	6	16	0	0	6	25	0	0	8	24	0	1	1	23	0	0	2	24	0	1	7	22	0	1	5	22	merge_repeat		chromOut			segmentDup
chr4	145848706	T	G	999	11 11 11 11 11 11 11 11	39	0	0	26	37	1	2	21	31	0	1	26	18	0	1	28	21	0	0	23	16	1	1	25	16	1	1	23	19	0	2	26	26	merge_repeat					segmentDup
chr4	145848707	A	C	999	11 11 11 11 11 11 11 11	39	0	0	26	37	0	0	21	31	0	0	26	18	0	1	28	21	0	0	23	16	1	1	25	16	1	0	23	19	0	2	26	26	merge_repeat					segmentDup
chr4	145848721	G	C	999	11 11 11 11 11 11 11 11	35	0	0	26	33	0	0	22	29	0	0	26	15	0	0	28	16	0	0	23	15	0	0	23	12	0	0	23	20	0	1	24	24	merge_repeat					segmentDup
chr4	145848822	T	C	999	11 11 11 11 11 11 11 11	22	0	0	7	15	0	1	14	14	0	0	14	12	0	0	18	16	0	0	17	10	0	0	12	16	0	0	12	12	0	0	7	18	merge_repeat					segmentDup
chr4	145848883	G	C	999	11 11 11 11 11 11 11 11	33	0	0	18	20	0	1	26	20	1	0	20	16	0	1	29	20	0	0	19	19	0	0	12	21	0	0	21	20	0	0	16	25	merge_repeat					segmentDup
chr4	145848885	T	C	999	11 11 11 11 11 11 11 11	33	0	0	18	20	0	1	26	19	1	0	20	16	0	1	29	20	0	0	20	19	0	0	12	21	0	0	21	20	0	0	16	25	merge_repeat					segmentDup
chr4	145848894	T	C	999	11 11 11 11 11 11 11 11	39	0	0	20	25	0	0	31	27	1	0	28	20	1	0	37	21	0	0	25	23	0	0	13	26	0	0	27	25	0	0	22	28	merge_repeat					segmentDup
chr4	145848905	G	A	999	11 11 11 11 11 11 11 11	41	0	0	21	28	0	1	33	29	1	0	28	22	1	0	38	24	0	0	30	23	0	0	13	28	0	0	26	30	0	0	25	28	merge_repeat					segmentDup
chr4	145848952	C	T	999	11 11 11 11 11 11 11 11	39	0	0	22	28	0	1	34	27	1	0	27	20	1	0	47	24	0	0	30	20	0	0	14	25	0	0	27	27	0	0	31	29	merge_repeat					segmentDup
chr4	145849702	C	T	480	11 11 11 11 11 11 11 11	28	0	0	23	12	0	0	22	19	0	1	21	7	0	0	20	8	0	0	19	16	0	0	28	8	0	0	18	10	0	0	22	12	merge_repeat					segmentDup
chr4	145849713	G	T	286	11 11 11 11 11 11 11 11	24	0	0	20	11	0	0	22	15	0	1	18	6	0	0	23	6	0	0	17	15	0	0	28	8	0	0	16	8	0	0	22	7	merge_repeat					segmentDup
chr4	145849714	C	T	300	11 11 11 11 11 11 11 11	24	0	0	20	11	0	0	21	15	0	0	18	6	0	0	23	6	0	0	17	15	0	0	28	8	0	0	16	8	0	0	22	7	merge_repeat					segmentDup
chr4	145849720	C	T	283	11 11 11 11 11 11 11 11	24	0	0	21	11	0	0	24	15	0	0	19	6	0	0	24	6	0	0	17	15	0	0	29	8	0	1	16	7	0	0	22	7	merge_repeat					segmentDup
chr4	146096744	G	C	426	11 11 11 11 11 11 11 11	22	0	1	9	20	1	0	8	13	0	0	8	19	0	0	16	18	0	0	9	18	0	0	10	16	0	0	7	20	0	0	10	14	merge_repeat					segmentDup
chr4	146118115	A	G	68	11 11 11 11 11 11 11 11	56	0	0	53	11	0	0	52	15	0	1	48	20	0	0	52	15	0	0	42	14	0	0	35	21	0	1	49	10	0	0	40	21	merge_repeat					segmentDup
chr4	146119974	A	G	317	11 11 11 11 11 11 11 11	21	0	0	11	14	0	0	7	14	0	0	9	20	0	0	5	19	0	0	6	22	0	0	7	21	0	0	5	23	0	0	7	17	merge_repeat					segmentDup
chr4	146120000	C	A	363	11 11 11 11 11 11 11 11	38	0	0	19	21	0	0	13	25	0	0	11	29	0	0	12	28	0	0	9	39	0	0	7	33	0	0	11	36	0	0	11	30	merge_repeat					segmentDup
chr4	146120039	T	A	348	11 11 11 11 11 11 11 11	40	0	0	19	21	0	1	15	26	0	0	12	29	0	1	12	27	0	0	9	39	0	0	7	34	0	0	11	33	0	0	12	29	merge_repeat					segmentDup
chr4	146122137	T	G	766	11 11 11 11 11 11 11 11	22	0	1	16	26	0	0	4	18	1	1	17	15	0	0	13	21	1	0	22	17	0	1	16	21	1	1	9	19	1	0	11	30	merge_repeat					segmentDup
chr4	146139601	C	T	249	11 11 11 11 11 11 11 11	31	0	0	20	15	1	0	14	17	0	0	16	23	1	0	25	37	0	0	17	31	0	0	15	28	0	0	15	16	0	0	24	17	merge_repeat		chromOut			segmentDup
chr4	146150808	A	T	999	11 11 11 11 11 11 11 11	45	1	0	19	34	1	0	13	37	0	0	25	36	0	0	13	35	0	0	7	52	0	1	19	41	0	2	16	29	0	0	14	31	merge_repeat					segmentDup
chr4	146150836	A	C	999	11 11 11 11 11 11 11 11	56	1	1	24	45	0	1	19	42	0	0	30	41	0	0	24	41	0	0	12	57	0	1	27	47	0	2	19	35	0	0	18	42	merge_repeat					segmentDup
chr4	146161691	T	C	86	11 11 11 11 11 11 11 11	22	1	0	15	8	0	0	28	5	1	0	42	2	0	0	40	10	0	0	35	8	0	2	52	8	0	0	45	3	0	0	14	8	merge_repeat					segmentDup
chr4	146161699	A	T	85	11 11 11 11 11 11 11 11	23	1	0	16	8	0	0	29	5	0	0	42	2	0	0	39	10	0	0	34	9	0	1	53	8	0	0	45	3	0	0	15	8	merge_repeat					segmentDup
chr4	146164082	T	C	241	11 11 11 11 11 11 11 11	23	1	0	16	22	1	2	13	35	1	1	27	19	0	0	19	21	0	0	13	16	0	0	18	22	1	0	18	17	0	1	12	10	merge_repeat		chromOut		nested	segmentDup
chr4	146165314	G	A	35.5135	11 11 11 11 11 11 11 11	78	2	1	82	3	3	1	76	9	2	1	94	8	1	4	89	8	1	0	74	6	0	3	70	6	1	2	69	13	0	2	68	8	merge_repeat					segmentDup
chr4	146176641	T	C	282	11 11 11 11 11 11 11 11	33	0	0	22	11	0	0	27	19	0	0	34	14	0	0	29	25	0	0	30	23	0	0	35	23	0	0	30	20	0	0	31	16	merge_repeat		chromOut			segmentDup
chr4	146177099	C	G	999	11 11 11 11 11 11 11 11	32	0	0	1	36	1	0	4	28	0	2	5	44	0	0	7	38	0	1	7	32	1	1	4	37	0	0	2	30	0	1	1	40	merge_repeat					segmentDup
chr4	146178402	T	A	175	11 11 11 11 11 11 11 11	36	0	2	1	57	0	0	3	54	0	0	4	32	0	1	4	44	0	2	2	51	0	1	2	38	2	1	2	44	0	1	2	33	merge_repeat					segmentDup
chr4	146193585	G	A	293	11 11 11 11 11 11 11 11	41	0	0	22	28	0	1	21	39	0	0	17	32	0	0	13	28	0	1	14	27	0	1	13	28	1	0	29	32	1	1	19	33	merge_repeat					segmentDup
chr4	146195969	G	C	513	11 11 11 11 11 11 11 11	75	0	0	4	76	0	0	4	101	0	0	3	72	0	0	8	83	0	0	7	73	0	0	7	85	0	0	5	86	0	0	6	90	merge_repeat		chromOut	simple		segmentDup
chr4	146255267	A	T	735	11 11 11 11 11 11 11 11	28	0	0	13	16	0	0	22	21	0	0	12	26	0	0	11	29	0	0	10	18	0	0	13	30	0	0	21	24	0	0	17	28	merge_repeat					segmentDup
chr4	146260034	C	T	363	11 11 11 11 11 11 11 11	44	0	0	13	31	0	0	8	41	0	0	14	40	0	0	21	26	0	0	23	42	0	0	16	36	0	0	15	34	0	0	12	36	merge_repeat		chromOut			segmentDup
chr4	146270943	T	G	179	11 11 11 11 11 11 11 11	23	0	0	23	13	0	0	15	13	1	0	18	12	0	0	12	11	0	0	15	19	1	0	17	8	0	0	17	10	1	0	15	14	merge_repeat					segmentDup
chr4	146272329	A	T	44.3803	11 11 11 00 00 11 11 11	72	1	0	93	20	0	0	102	12	0	0	81	9	2	2	91	8	3	2	80	13	1	1	64	6	1	0	97	16	1	1	69	10	merge_repeat					segmentDup
chr4	146272578	T	G	999	11 11 11 11 11 11 11 11	39	0	0	23	18	0	0	30	24	0	0	25	14	0	0	32	14	0	0	26	24	0	0	29	34	0	1	30	24	2	0	33	18	merge_repeat					segmentDup
chr4	146282943	C	A	537	11 11 11 11 11 11 11 11	25	0	0	26	6	0	0	22	7	0	0	27	9	1	0	18	6	0	0	23	8	0	0	21	10	0	0	19	8	0	0	21	6	merge_repeat		chromOut		nested	segmentDup
chr4	146442951	A	G	999	11 11 11 11 11 11 11 11	25	0	0	19	6	1	0	20	8	0	0	32	3	0	0	24	3	1	0	31	2	0	0	21	5	0	0	21	7	0	0	25	3	merge_repeat					segmentDup
chr4	146474945	T	G	999	11 11 11 11 11 11 11 11	33	0	0	24	18	0	0	22	24	0	0	22	11	0	0	28	13	0	0	33	17	0	0	20	21	0	0	27	15	0	0	20	20	merge_repeat					segmentDup
chr4	146474957	A	G	999	11 11 11 11 11 11 11 11	33	0	0	29	16	0	0	23	19	0	0	23	10	0	0	30	12	0	0	37	16	0	0	19	17	0	0	27	11	0	0	18	19	merge_repeat					segmentDup
chr4	146474960	T	C	999	11 11 11 11 11 11 11 11	32	0	0	29	16	0	0	23	19	0	0	23	10	0	0	30	11	0	0	37	16	0	0	19	13	0	0	28	10	0	0	18	19	merge_repeat					segmentDup
chr4	146581585	G	A	999	11 11 11 11 11 11 11 11	39	0	0	31	23	0	0	20	19	0	0	21	21	0	0	24	19	0	0	21	22	0	0	23	25	0	0	32	31	0	0	21	22	merge_repeat					segmentDup
chr4	146638368	A	G	260	11 11 11 11 11 11 11 11	45	0	0	18	32	0	0	30	27	0	0	30	36	2	0	20	35	0	0	26	27	0	0	19	33	0	0	22	34	0	0	19	26	merge_repeat					segmentDup
chr4	146811702	A	G	179	11 11 11 11 11 11 11 11	32	1	0	23	14	0	0	20	15	0	0	28	16	0	0	18	27	0	0	24	23	0	0	17	23	0	0	20	12	0	1	26	13	merge_repeat		chromOut		nested	segmentDup
chr4	146827635	C	T	285	11 11 11 11 11 11 11 11	38	0	0	17	31	0	0	18	22	0	0	16	29	0	0	21	30	0	0	18	34	0	0	14	28	0	1	16	21	0	1	24	25	merge_repeat					segmentDup
chr4	146973054	T	C	999	11 11 11 11 11 11 11 11	41	0	0	24	27	0	1	16	24	0	1	27	33	0	0	26	52	0	0	38	49	0	0	26	35	0	0	25	44	0	0	18	30	merge_repeat					segmentDup
chr4	146973130	G	T	999	11 11 11 11 11 11 11 11	42	0	0	4	43	0	0	8	35	0	0	11	46	0	0	16	52	0	0	16	46	0	0	8	37	0	0	12	46	0	0	8	34	merge_repeat					segmentDup
chr4	146991738	G	A	137	11 11 11 11 11 11 11 11	34	0	0	25	23	0	0	25	15	0	0	29	13	0	0	30	15	0	0	25	19	0	0	35	17	0	0	19	15	1	0	31	21	merge_repeat					segmentDup
chr4	147007625	T	C	268	11 11 11 11 11 11 11 11	29	0	0	9	20	0	1	15	25	0	0	20	19	0	0	15	27	0	0	15	18	0	0	18	22	0	0	12	21	0	0	25	20	merge_repeat		chromOut		nested	segmentDup
chr4	147030311	T	A	60	11 11 11 11 11 11 11 11	69	0	0	84	2	0	0	63	6	0	0	81	6	0	0	68	9	0	0	71	5	0	0	83	10	0	0	67	4	0	0	74	5	merge_repeat					segmentDup
chr4	147030313	G	A	60	11 11 11 11 11 11 11 11	69	0	0	84	2	0	0	63	6	0	0	81	6	0	0	68	9	0	0	71	5	0	0	83	10	0	0	67	4	0	0	74	5	merge_repeat					segmentDup
chr4	147034984	G	A	99	11 11 11 11 11 11 11 11	31	0	0	32	12	2	0	21	22	0	0	26	17	0	0	30	12	0	0	35	12	0	0	28	3	0	0	39	17	0	0	23	11	merge_repeat		chromOut		nested	segmentDup
chr4	147041464	G	A	999	11 11 11 11 11 11 11 11	75	0	1	66	18	0	1	77	20	0	0	79	6	0	0	92	8	0	0	69	7	1	0	69	6	0	0	63	12	0	1	76	5	merge_repeat					segmentDup
chr4	147055877	G	A	240	11 11 11 11 11 11 11 11	32	1	0	20	22	0	0	26	20	0	0	10	22	0	0	20	19	0	0	18	23	0	0	23	29	0	0	24	23	1	0	16	27	merge_repeat					segmentDup
chr4	147058262	G	C	699	11 11 11 11 11 11 11 11	42	0	1	14	44	0	1	11	44	0	0	14	36	0	2	11	54	0	0	15	27	0	1	13	40	2	0	9	39	0	1	9	36	merge_repeat		chromOut	simple		segmentDup
chr4	147117635	G	A	999	11 11 11 11 11 11 11 11	63	0	0	61	23	2	0	44	24	2	1	44	22	0	2	44	26	0	1	49	31	1	1	29	32	2	1	45	21	1	1	48	29	merge_repeat					segmentDup
chr4	147117739	C	A	999	11 11 11 11 11 11 11 11	219	1	0	153	106	4	2	117	96	0	0	143	91	2	1	161	73	1	0	145	81	1	1	134	104	1	2	144	89	2	0	122	97	merge_repeat					segmentDup
chr4	147117779	T	A	999	11 11 11 11 11 11 11 11	206	0	1	122	120	0	1	109	112	0	0	137	100	1	1	161	72	1	0	139	76	0	1	134	96	1	0	132	98	2	1	108	95	merge_repeat					segmentDup
chr4	147118218	T	A	999	11 11 11 11 11 11 11 11	100	2	0	8	90	0	0	10	95	0	0	7	99	0	1	6	107	0	0	8	122	0	0	7	117	0	0	7	97	1	1	8	95	merge_repeat		chromOut			segmentDup
chr4	147121314	G	A	999	11 11 11 11 11 11 11 11	178	1	0	30	168	2	0	15	173	2	0	17	173	0	0	20	159	0	0	26	172	2	2	23	164	2	1	15	195	0	2	20	156	merge_repeat		chromOut		nested	segmentDup
chr4	147121893	G	T	999	11 11 11 11 11 11 11 11	38	0	0	44	4	0	0	33	5	0	0	54	7	0	0	46	16	0	0	60	18	0	0	41	8	0	0	58	9	0	1	41	13	merge_repeat					segmentDup
chr4	147130129	T	C	999	11 11 11 11 11 11 11 11	25	0	0	8	20	0	1	14	18	0	1	9	15	0	1	5	22	1	0	14	16	1	0	6	21	0	0	11	18	0	0	17	10	merge_repeat		chromOut			segmentDup
chr4	147130192	C	T	999	11 11 11 11 11 11 11 11	24	1	0	9	27	0	1	11	31	0	1	12	17	0	1	7	22	1	0	18	14	1	0	6	17	0	0	12	24	0	0	12	20	merge_repeat		chromOut			segmentDup
chr4	147132720	T	C	999	11 11 11 11 11 11 11 11	40	0	1	36	10	0	0	37	8	0	0	35	7	0	1	69	7	0	1	50	8	1	0	39	9	0	0	50	7	0	1	34	5	merge_repeat					segmentDup
chr4	147132897	T	C	999	11 11 11 11 11 11 11 11	54	1	0	16	37	1	1	21	41	0	0	15	41	1	0	6	49	0	0	11	49	0	0	13	46	0	0	15	39	0	1	24	33	merge_repeat		chromOut			segmentDup
chr4	147132934	C	T	999	11 11 11 11 11 11 11 11	46	1	0	15	36	1	1	19	33	0	0	15	31	0	0	6	46	1	0	13	50	1	1	11	39	0	1	15	36	1	0	20	33	merge_repeat		chromOut			segmentDup
chr4	147132958	A	C	999	11 11 11 11 11 11 11 11	25	1	0	10	22	1	0	12	19	0	0	10	15	0	0	5	33	1	0	14	23	1	1	7	20	0	1	11	22	1	0	11	19	merge_repeat		chromOut			segmentDup
chr4	147137951	C	T	680	11 11 11 11 11 11 11 11	34	0	0	22	16	0	0	33	6	0	0	38	5	1	0	23	13	0	0	39	10	0	0	38	9	0	0	28	6	0	1	38	8	merge_repeat					segmentDup
chr4	147138233	A	G	999	11 11 11 11 11 11 11 11	28	1	1	7	21	2	0	9	38	1	0	10	31	2	1	18	29	0	1	9	22	2	1	13	30	1	1	8	18	1	1	5	32	merge_repeat					segmentDup
chr4	147140825	A	C	999	11 11 11 11 11 11 11 11	27	0	0	27	7	0	0	22	10	0	0	23	10	0	0	22	5	0	0	34	14	0	0	33	6	0	0	21	8	0	0	19	10	merge_repeat		chromOut		nested	segmentDup
chr4	147140826	A	C	999	11 11 11 11 11 11 11 11	27	0	0	27	7	0	0	22	10	0	0	23	10	0	0	22	5	0	0	34	14	0	0	33	6	0	0	21	8	0	0	19	10	merge_repeat		chromOut		nested	segmentDup
chr4	147195806	G	C	999	11 11 11 11 11 11 11 11	41	0	0	74	12	0	0	52	8	0	0	64	1	0	0	58	6	0	0	70	2	0	0	40	1	0	0	64	4	0	0	51	6	merge_repeat		chromOut			segmentDup
chr4	147195826	A	G	999	11 11 11 11 11 11 11 11	65	0	0	86	10	0	0	63	13	0	0	82	3	1	0	73	9	0	0	85	7	0	0	57	8	0	0	79	12	0	0	59	10	merge_repeat		chromOut			segmentDup
chr4	147195832	C	G	999	11 11 11 11 11 11 11 11	66	1	0	87	8	0	0	64	12	0	0	84	3	1	0	77	7	0	0	86	7	0	0	58	8	0	0	81	11	0	0	62	7	merge_repeat		chromOut			segmentDup
chr4	147195840	C	G	999	11 11 11 11 11 11 11 11	65	0	0	88	8	0	0	63	11	0	0	85	3	2	0	76	6	0	0	86	7	0	0	57	8	0	0	78	11	0	0	60	7	merge_repeat		chromOut			segmentDup
chr4	147195873	T	C	999	11 11 11 11 11 11 11 11	63	3	0	82	3	2	0	60	9	0	0	78	4	3	0	72	3	0	1	77	7	0	1	55	7	1	0	71	9	1	0	56	10	merge_repeat		chromOut			segmentDup
chr4	147314527	A	G	425	11 11 11 11 11 11 11 11	45	1	0	30	14	0	0	31	15	1	1	43	9	0	1	52	14	0	1	44	16	1	1	42	12	0	1	36	12	1	1	39	13	merge_repeat		chromOut		nested	segmentDup
chr4	147316258	A	G	312	11 11 11 11 11 11 11 11	23	0	0	5	18	1	0	10	19	1	0	5	18	0	0	18	25	1	0	8	21	1	0	1	22	0	1	10	19	0	0	8	18	merge_repeat					segmentDup
chr4	147367128	T	C	233	11 11 11 11 11 11 11 11	67	0	0	37	37	0	0	29	39	0	0	36	52	1	0	53	48	0	0	39	40	0	0	41	40	0	0	27	40	0	0	28	39	merge_repeat					segmentDup
chr4	147373222	G	A	99	11 11 11 11 11 11 11 11	27	0	0	26	13	0	0	35	19	0	0	30	15	0	0	33	7	0	0	28	10	0	0	21	6	0	0	24	22	0	0	25	7	merge_repeat		chromOut		nested	segmentDup
chr4	147377126	T	G	447	11 11 11 11 11 11 11 11	65	0	0	5	60	0	0	18	70	1	0	20	63	0	0	21	66	0	0	16	63	0	0	17	54	0	0	19	53	0	0	14	52	merge_repeat					segmentDup
chr4	147377449	G	T	312	11 11 11 11 11 11 11 11	25	0	0	13	12	0	0	11	20	0	0	20	19	0	0	11	23	0	0	9	29	0	0	9	25	0	0	12	20	0	0	9	27	merge_repeat		chromOut			segmentDup
chr4	147377720	A	G	93	11 11 11 11 11 11 11 11	20	0	0	17	10	0	0	24	5	0	0	31	12	0	0	20	10	0	0	21	2	0	0	18	8	0	0	22	7	0	0	18	2	merge_repeat					segmentDup
chr4	147379138	C	T	95	11 11 11 11 11 11 11 11	57	0	0	43	21	0	1	50	13	0	0	49	21	0	0	50	28	0	0	43	27	1	0	51	22	1	0	53	30	0	1	33	23	merge_repeat					segmentDup
chr4	147380201	A	G	226	11 11 11 11 11 11 11 11	78	0	0	36	45	0	0	39	39	0	0	49	45	0	0	43	58	0	0	45	55	0	0	44	50	1	0	43	46	0	0	37	41	merge_repeat					segmentDup
chr4	147393775	G	C,T	999	12 12 12 12 12 12 12 12	43	0	0	39	16	0	0	47	7	1	1	30	11	0	2	43	12	0	0	42	12	0	0	45	9	0	0	39	16	1	0	42	13	merge_repeat					segmentDup
chr4	147623613	T	C	148	11 11 11 11 11 11 11 11	71	0	1	51	44	1	2	44	38	0	1	43	38	0	0	52	38	1	0	39	31	0	0	51	28	0	1	44	39	0	1	52	34	merge_repeat					segmentDup
chr4	147624676	G	A	341	11 11 11 11 11 11 11 11	46	0	0	17	55	0	0	19	45	1	0	21	53	0	0	26	48	0	0	24	52	0	2	26	43	2	2	20	46	0	0	17	29	merge_repeat					segmentDup
chr4	147626365	C	A	99	11 11 11 11 11 11 11 11	22	0	0	14	8	0	0	21	5	0	0	19	4	0	0	26	11	0	0	22	7	0	0	15	8	0	0	28	9	0	0	22	5	merge_repeat		chromOut			segmentDup
chr4	147626688	A	C	58	11 11 11 11 11 11 11 11	44	1	0	62	11	0	0	66	21	0	0	52	17	0	0	56	15	1	0	50	15	0	0	50	19	0	1	34	9	0	0	58	14	merge_repeat					segmentDup
chr4	147630592	C	T	329	11 11 11 11 11 11 11 11	36	0	0	13	25	0	0	11	37	0	1	17	25	0	0	11	25	0	0	5	40	0	0	15	25	0	1	16	33	0	0	20	26	merge_repeat		chromOut		nested	segmentDup
chr4	147632713	A	C	279	11 11 11 11 11 11 11 11	21	0	1	14	18	0	0	13	17	0	0	8	16	0	0	10	16	0	0	7	22	0	1	9	15	0	0	9	12	0	0	11	16	merge_repeat		chromOut		nested	segmentDup
chr4	147636686	A	G	187	11 11 11 11 11 11 11 11	65	0	0	37	38	0	0	41	38	0	0	29	49	0	0	45	39	0	0	49	36	0	0	39	26	0	0	35	38	0	0	42	27	merge_repeat					segmentDup
chr4	147647781	G	A	64	11 11 11 11 11 11 11 11	39	0	1	30	14	1	1	43	14	0	1	40	11	1	0	32	14	0	1	29	9	0	1	42	17	0	2	39	15	0	1	38	17	merge_repeat		chromOut		nested	segmentDup
chr4	147657422	A	G	167	11 11 11 11 11 11 11 11	33	0	0	25	15	0	0	22	14	0	0	26	23	1	0	26	25	0	0	23	19	0	0	15	18	0	1	26	13	0	0	26	14	merge_repeat		chromOut		nested	segmentDup
chr4	147673241	C	T	586	11 11 11 11 11 11 11 11	56	0	0	14	56	1	0	10	51	0	1	7	57	0	0	11	47	0	0	12	64	1	0	14	41	0	1	14	50	0	1	17	53	merge_repeat					segmentDup
chr4	147682061	T	C	429	11 11 11 11 11 11 11 11	38	0	0	8	55	0	2	16	46	0	0	13	46	0	0	12	42	0	0	11	45	0	0	12	46	0	0	15	47	0	0	8	30	merge_repeat					segmentDup
chr4	148661822	T	C	999	11 11 11 11 11 11 11 11	45	0	0	34	24	0	0	32	24	0	0	24	29	0	0	38	24	0	0	32	22	0	0	29	23	0	0	30	15	0	0	30	21
chr4	149097123	G	A	999	11 11 11 11 11 11 11 11	40	0	0	24	17	0	0	28	22	0	0	29	29	0	0	31	31	0	0	16	24	0	0	37	19	0	0	31	16	0	0	25	28	merge_repeat	trfMask	chromOut	simple
chr4	149440244	T	C	999	11 11 11 11 11 11 11 11	48	0	0	21	27	0	0	29	20	0	0	27	30	0	0	33	30	0	0	22	42	0	0	23	31	0	0	22	31	0	0	24	25	merge_repeat		chromOut
chr4	150511226	A	C	999	11 11 11 11 11 11 11 11	24	0	0	11	15	0	0	10	14	0	0	12	13	0	0	20	22	0	0	23	19	0	0	18	12	0	0	17	18	0	0	15	14
chr4	150586677	A	T	999	11 11 11 11 11 11 11 11	23	0	0	12	11	0	0	17	14	0	0	13	16	1	0	17	10	0	0	26	19	0	0	12	14	0	0	17	12	0	0	16	12	merge_repeat				nested
chr4	151560926	G	C	999	11 11 11 11 11 11 11 11	37	0	0	18	27	0	0	21	26	0	0	24	28	0	0	20	25	0	0	27	37	0	0	24	17	0	0	21	20	0	0	13	24	merge_repeat		chromOut
chr4	152176549	A	G	999	11 11 11 11 11 11 11 11	47	0	0	25	30	0	0	26	31	0	0	33	22	0	0	33	23	0	0	32	26	0	0	26	21	0	0	42	21	1	0	25	28	merge_repeat		chromOut		nested
chr4	153505697	A	G	999	11 11 11 11 11 11 11 11	33	0	0	19	14	0	0	27	24	0	0	33	20	0	0	27	17	0	0	28	29	0	0	20	19	0	0	23	19	0	0	19	34
chr4	153808371	A	C	999	11 11 11 11 11 11 11 11	36	0	0	18	22	0	0	23	30	0	0	19	28	0	0	27	37	0	0	29	32	0	0	16	20	0	0	23	26	0	0	20	22	merge_repeat	trfMask	chromOut	simple	nested
chr4	153928710	T	G	999	11 11 11 11 11 11 11 11	34	0	0	23	12	0	0	36	17	0	0	19	16	0	0	33	11	0	0	21	17	0	0	27	10	0	0	25	10	0	0	22	12	merge_repeat		chromOut	simple
chr4	154090137	A	T	999	11 11 11 11 11 11 11 11	20	0	0	8	15	0	0	7	13	0	0	9	22	0	0	10	20	0	0	15	12	0	0	8	18	0	0	9	18	0	0	15	18	merge_repeat		chromOut	simple
chr4	154995140	T	C	999	11 11 11 11 11 11 11 11	46	0	0	29	22	0	0	32	21	0	0	33	19	0	0	30	32	0	0	26	28	0	0	32	22	0	0	21	25	0	0	25	23
chr4	155644823	C	A	999	11 11 11 11 11 11 11 11	22	0	0	12	10	0	0	19	10	0	0	13	14	0	0	12	11	0	0	12	13	0	0	10	15	0	0	10	14	0	0	19	7	merge_repeat		chromOut		nested
chr4	156066013	A	G	999	11 11 11 11 11 11 11 11	41	0	0	35	16	0	0	29	23	0	0	21	20	0	0	38	29	0	0	36	30	0	0	33	29	0	0	29	24	0	0	22	23	merge_repeat		chromOut
chr4	156252711	C	A	999	11 11 11 11 11 11 11 11	42	0	0	28	20	0	1	37	22	0	0	28	19	0	0	32	30	0	0	29	21	0	0	26	19	0	0	20	22	0	0	32	22
chr4	156252712	A	C	999	11 11 11 11 11 11 11 11	42	0	0	28	20	0	0	37	22	0	0	28	19	0	0	32	29	0	0	29	21	0	0	26	19	0	0	20	22	0	0	32	22
chr4	156252717	A	T	999	11 11 11 11 11 11 11 11	40	0	0	24	23	0	0	36	23	0	0	26	19	0	0	30	28	0	0	30	21	0	0	25	17	0	0	18	22	0	0	31	24
chr4	156252718	T	A	999	11 11 11 11 11 11 11 11	40	0	0	24	23	0	0	35	24	0	0	26	19	0	0	30	28	0	0	30	21	0	0	25	17	0	0	18	22	0	0	31	24
chr4	156316159	A	G	999	11 11 11 11 11 11 11 11	45	0	0	25	35	0	0	19	31	0	0	32	26	0	0	24	25	0	0	27	21	0	0	21	26	0	0	22	23	0	0	33	27	merge_repeat		chromOut
chr4	156357723	A	C	999	11 11 11 11 11 11 11 11	49	0	0	26	26	0	1	39	32	0	0	25	24	0	0	28	29	0	0	30	37	0	0	35	28	0	1	33	24	0	0	31	37	merge_repeat			simple