chr position ref alt quality samtools_GT_RAW min_depth 1RF 1RR 1AF 1AR 2RF 2RR 2AF 2AR 3RF 3RR 3AF 3AR 4RF 4RR 4AF 4AR 5RF 5RR 5AF 5AR 6RF 6RR 6AF 6AR 7RF 7RR 7AF 7AR 8RF 8RR 8AF 8AR merge_repeat trfMask chromOut simple nested segmentDup
chr3 3001059 G T 999 11 11 11 11 11 11 11 11 46 0 0 26 20 0 0 39 39 0 0 26 30 0 0 40 23 0 0 30 25 0 0 27 28 0 0 35 28 0 0 29 29 merge_repeat simple
chr3 3003991 G T 999 11 11 11 11 11 11 11 11 37 0 2 31 31 0 0 32 32 0 0 29 26 0 0 29 23 0 0 20 30 0 0 28 27 0 0 22 15 0 1 26 19 merge_repeat simple
chr3 3003993 C T 999 11 11 11 11 11 11 11 11 35 0 2 31 31 0 0 32 32 0 0 29 26 0 0 29 23 0 0 19 29 0 0 28 28 0 0 21 14 0 0 26 21 merge_repeat simple
chr3 3003995 G C 999 11 11 11 11 11 11 11 11 35 0 2 31 31 0 0 32 32 0 0 28 26 0 0 29 23 0 0 18 29 0 0 28 28 0 0 21 14 0 0 26 21 merge_repeat simple
chr3 3003997 C A 999 11 11 11 11 11 11 11 11 34 0 2 31 31 0 0 32 32 0 0 28 25 0 0 29 23 0 0 18 29 0 0 28 28 0 0 21 13 0 0 26 21 merge_repeat simple
chr3 3004001 T A 999 11 11 11 11 11 11 11 11 35 0 2 31 31 0 0 32 32 0 0 28 26 0 0 29 23 0 0 18 29 0 0 28 28 0 0 21 14 0 1 26 20 merge_repeat simple
chr3 3004078 C T 999 11 11 11 11 11 11 11 11 46 0 0 30 29 0 0 44 36 0 0 32 36 0 0 23 38 0 0 28 34 0 0 26 22 0 2 28 19 0 0 23 23 merge_repeat simple
chr3 3004080 C T 999 11 11 11 11 11 11 11 11 46 0 0 30 29 0 0 44 37 0 0 32 36 1 0 24 38 0 0 28 34 0 0 26 22 0 1 28 20 1 0 22 23 merge_repeat simple
chr3 3004081 A C 999 11 11 11 11 11 11 11 11 45 0 0 30 29 0 0 44 37 0 0 32 36 1 0 24 38 0 0 28 34 0 0 26 22 0 2 28 19 1 0 22 22 merge_repeat simple
chr3 3004120 C T 999 11 11 11 11 11 11 11 11 48 0 0 26 40 0 0 33 39 0 0 28 36 1 0 24 42 0 0 36 31 0 0 29 24 0 0 36 30 0 0 20 28 merge_repeat simple
chr3 3004123 A T 999 11 11 11 11 11 11 11 11 49 0 0 27 44 0 0 33 39 0 0 29 37 1 0 26 43 0 0 36 31 0 0 29 24 0 0 38 31 0 0 20 29 merge_repeat simple
chr3 3004166 G C 999 11 11 11 11 11 11 11 11 52 0 1 34 42 0 0 30 37 0 0 24 39 0 0 29 37 0 0 31 30 0 0 23 29 0 0 40 33 0 0 26 28 merge_repeat simple
chr3 3007317 T A 999 11 11 11 11 11 11 11 11 50 0 0 35 34 0 0 37 49 0 0 27 35 0 0 40 31 0 0 24 38 0 0 35 24 0 0 31 34 0 0 26 24 merge_repeat simple
chr3 3009912 T A 999 11 11 11 11 11 11 11 11 49 0 0 36 36 0 0 35 39 0 0 33 30 0 1 20 30 0 0 39 22 0 0 27 29 0 0 33 45 0 0 28 21 merge_repeat chromOut simple
chr3 3009922 C T 999 11 11 11 11 11 11 11 11 47 0 0 35 34 0 1 34 37 0 0 36 31 0 1 23 28 0 0 37 20 0 0 28 30 0 1 32 46 0 0 28 19 merge_repeat chromOut simple
chr3 3009939 G T 999 11 11 11 11 11 11 11 11 53 0 0 38 34 0 1 32 43 0 0 36 28 0 0 28 27 0 0 33 23 0 0 28 25 0 1 32 40 0 0 28 25 merge_repeat chromOut simple
chr3 3009941 G T 999 11 11 11 11 11 11 11 11 53 0 0 38 35 0 2 32 41 0 0 36 28 0 0 28 28 0 0 32 23 0 0 28 25 0 1 32 41 0 0 28 25 merge_repeat chromOut simple
chr3 3009994 G C 999 11 11 11 11 11 11 11 11 51 0 0 39 27 0 2 26 37 0 0 36 30 0 0 35 34 0 0 27 24 0 1 29 32 0 0 28 32 0 0 23 28 merge_repeat simple
chr3 3009995 G T 999 11 11 11 11 11 11 11 11 51 0 0 39 27 0 0 26 37 0 0 37 30 0 1 35 33 0 0 27 24 0 1 29 32 0 0 28 32 0 0 23 28 merge_repeat simple
chr3 3010053 C T 999 11 11 11 11 11 11 11 11 55 0 0 39 25 0 0 25 32 0 0 35 27 0 0 38 28 0 0 27 31 0 0 31 28 0 0 30 25 0 0 28 32 merge_repeat simple
chr3 3010166 A T 999 11 11 11 11 11 11 11 11 52 0 0 25 35 0 0 34 32 0 0 32 30 0 0 32 20 0 0 35 37 0 0 28 27 1 0 37 24 0 0 35 22 merge_repeat simple
chr3 3010167 C A 999 11 11 11 11 11 11 11 11 52 0 0 25 35 0 0 34 32 0 0 32 29 0 0 32 20 0 0 35 36 0 0 28 27 1 0 37 25 0 0 35 22 merge_repeat simple
chr3 3011826 T G,A 999 12 12 12 12 12 12 12 12 35 0 0 35 21 0 0 18 37 0 0 21 26 0 0 24 29 0 0 19 16 0 0 17 20 0 0 26 32 0 0 24 21 merge_repeat chromOut simple
chr3 4404406 T G 999 11 11 11 11 11 11 11 11 39 0 0 22 30 0 0 28 29 0 0 31 31 0 0 27 26 0 0 37 29 0 0 19 20 0 0 29 34 0 0 22 25 @
chr3 5584160 A T 999 11 11 11 11 11 11 11 11 54 0 0 32 39 0 0 38 33 0 0 34 33 0 0 26 36 0 0 38 37 0 0 25 29 0 0 42 40 0 0 34 32 merge_repeat chromOut
chr3 6392284 C A 999 11 11 11 11 11 11 11 11 21 0 0 24 5 0 0 22 3 0 0 23 9 0 0 21 7 0 0 25 3 0 0 15 7 0 0 15 6 0 0 18 3 merge_repeat chromOut
chr3 6783150 T A 999 11 11 11 11 11 11 11 11 44 0 0 20 39 0 0 25 37 0 0 16 28 0 0 20 27 0 0 28 39 0 0 21 35 0 0 15 35 0 0 20 31 merge_repeat trfMask chromOut simple nested
chr3 9325238 A G 999 11 11 11 11 11 11 11 11 33 0 0 25 17 0 0 30 15 0 0 25 27 0 0 27 19 0 0 23 13 0 0 27 13 0 0 19 17 0 0 23 10 @
chr3 9788274 G A 999 11 11 11 11 11 11 11 11 41 0 0 26 16 0 0 21 20 0 0 20 22 0 0 30 12 0 0 27 17 0 0 30 25 0 0 21 21 0 0 28 16 @
chr3 10151925 T C 999 11 11 11 11 11 11 11 11 20 0 0 12 22 0 0 16 19 0 0 15 24 0 0 16 17 0 0 16 18 0 0 12 20 0 0 12 18 0 0 6 14 @
chr3 10322192 T A 999 11 11 11 11 11 11 11 11 41 0 0 28 31 0 1 21 19 0 0 17 25 0 0 26 33 0 0 25 43 0 1 18 23 0 0 22 22 0 0 20 24 merge_repeat trfMask chromOut simple
chr3 11866284 T C 999 11 11 11 11 11 11 11 11 52 0 0 26 26 0 0 27 39 0 0 22 34 0 0 15 38 0 0 33 35 0 0 21 36 0 0 25 29 0 0 22 37 @
chr3 12784644 A C 999 11 11 11 11 11 11 11 11 22 0 0 16 18 0 0 9 13 0 0 18 24 0 0 15 18 0 0 17 18 0 0 14 14 0 0 16 17 0 0 11 11 merge_repeat trfMask chromOut simple
chr3 15847067 T G,A 999 12 12 12 12 12 12 12 11 34 0 0 17 17 0 0 22 18 0 0 20 17 0 0 20 32 0 0 11 29 0 0 27 16 0 0 20 19 0 0 21 20 merge_repeat trfMask chromOut simple nested segmentDup
chr3 16764819 A T 999 11 11 11 11 11 11 11 11 25 0 0 13 20 0 0 10 15 0 0 13 21 0 0 19 28 0 0 18 22 1 1 15 28 0 0 13 24 1 0 12 17 merge_repeat chromOut nested
chr3 18035360 G A 999 11 11 11 11 11 11 11 11 44 0 0 24 32 0 0 42 22 0 0 31 32 0 0 33 28 0 1 29 44 0 0 30 31 0 0 19 25 0 0 40 30 merge_repeat chromOut nested
chr3 19572626 C A 999 11 11 11 11 11 11 11 11 32 0 0 29 6 0 0 26 7 0 0 30 10 0 0 39 11 0 0 30 2 0 1 31 7 0 0 24 8 0 0 26 6 merge_repeat nested
chr3 19747594 T C 999 11 11 11 11 11 11 11 11 41 0 0 23 26 0 0 28 31 0 0 22 25 0 0 28 27 0 0 20 31 0 0 25 24 0 0 18 23 0 0 28 26 @
chr3 19753314 A G 999 11 11 11 11 11 11 11 11 60 0 0 38 26 0 0 42 29 0 0 51 46 0 0 40 37 0 0 40 28 0 0 24 36 0 0 44 30 0 0 39 31 @
chr3 19767484 C A 999 11 11 11 11 11 11 11 11 55 0 0 39 28 0 0 33 42 0 0 35 41 0 0 35 33 0 0 34 32 0 0 32 23 0 0 39 46 0 0 33 28 @
chr3 19866126 T C 999 11 11 11 11 11 11 11 11 41 0 0 31 19 0 0 24 17 0 0 26 19 0 0 23 18 0 0 25 25 0 0 34 23 0 0 31 20 0 0 23 21 @
chr3 21312447 A G 999 11 11 11 11 11 11 11 11 52 0 0 39 37 0 0 24 41 0 0 24 33 0 0 35 40 0 0 25 31 0 0 17 35 0 0 33 28 0 0 27 33 @
chr3 21568097 T C 999 11 11 11 11 11 11 11 11 52 0 0 32 30 0 0 25 27 0 0 33 35 0 0 39 29 0 0 37 31 0 0 34 27 0 0 37 29 0 0 34 29 merge_repeat nested
chr3 23510739 C A 999 11 11 11 11 11 11 11 11 50 0 0 29 39 0 0 38 23 0 0 34 37 0 0 35 33 0 0 17 33 0 0 33 30 0 0 26 33 0 0 31 28 merge_repeat simple
chr3 23824920 T A 999 11 11 11 11 11 11 11 11 59 0 0 44 40 0 0 52 37 0 0 40 49 0 0 33 47 0 0 44 39 0 0 26 33 0 0 43 37 0 0 49 38 @
chr3 25941218 A G 999 11 11 11 11 11 11 11 11 49 0 0 38 36 0 0 20 42 0 0 22 45 0 0 20 30 0 0 34 35 0 0 31 39 0 0 32 32 0 0 25 24 @
chr3 25999892 C T 999 11 11 11 11 11 11 11 11 45 0 0 26 31 0 0 21 24 0 0 23 26 0 0 31 27 0 0 26 28 0 0 25 40 0 0 30 27 0 0 36 20 @
chr3 26492124 G T 999 11 11 11 11 11 11 11 11 31 0 0 19 26 1 0 11 26 0 0 15 16 1 0 16 22 1 0 18 20 1 0 17 13 0 0 17 18 1 0 21 16 merge_repeat trfMask chromOut simple
chr3 27482858 A G 999 11 11 11 11 11 11 11 11 27 0 0 16 16 0 0 15 17 0 0 12 24 0 0 12 26 0 0 13 16 0 0 15 12 0 0 15 14 0 0 8 19 @
chr3 27482888 A G 999 11 11 11 11 11 11 11 11 32 0 0 19 20 0 0 22 12 0 0 13 23 0 0 20 24 0 0 19 18 0 0 19 13 0 0 16 18 0 0 15 22 @
chr3 27965782 T C 999 11 11 11 11 11 11 11 11 45 0 0 27 22 0 0 24 36 0 0 24 30 0 0 32 36 0 0 35 30 0 0 16 30 0 0 20 31 0 0 13 32 @
chr3 28161116 T C 999 11 11 11 11 11 11 11 11 37 0 0 35 25 0 0 32 26 0 0 35 17 0 0 22 28 0 0 42 40 0 0 38 31 0 0 33 26 0 0 21 16 merge_repeat chromOut nested
chr3 29822410 A G 999 11 11 11 11 11 11 11 11 41 0 0 27 21 0 0 27 28 0 0 27 19 0 0 38 29 0 0 22 37 0 0 21 20 0 0 29 38 0 0 31 24 @
chr3 30584431 T A 999 11 11 11 11 11 11 11 11 26 0 0 14 15 0 0 19 19 0 0 19 7 0 0 16 19 0 0 17 21 0 0 25 22 0 0 17 16 0 0 15 21 merge_repeat trfMask chromOut simple nested
chr3 30593440 A C 999 11 11 11 11 11 11 11 11 35 0 0 25 23 0 0 15 22 0 0 15 25 0 0 20 23 0 0 19 34 0 0 18 27 0 0 14 21 0 0 17 21 merge_repeat chromOut
chr3 30594202 A G 999 11 11 11 11 11 11 11 11 31 0 0 19 15 0 0 20 20 0 0 23 17 0 0 21 20 0 0 20 14 0 0 17 20 0 0 19 22 0 0 19 12 @
chr3 34599047 T G 999 11 11 11 11 11 11 11 11 31 0 0 20 21 0 0 20 21 0 0 25 15 0 0 28 18 0 0 32 22 0 0 20 27 0 0 26 20 0 0 18 13 merge_repeat trfMask chromOut simple
chr3 35229097 A T 999 11 11 11 11 11 11 11 11 45 0 0 20 34 0 0 23 31 0 0 20 43 0 0 20 43 0 0 24 41 0 0 21 38 0 0 19 26 0 0 23 38 @
chr3 36031229 C A 999 11 11 11 11 11 11 11 11 26 0 0 30 9 0 0 28 7 0 0 29 10 0 0 22 7 0 0 20 6 0 0 26 5 0 0 26 9 0 0 21 7 merge_repeat chromOut nested
chr3 36191099 G A 999 11 11 11 11 11 11 11 11 49 0 0 35 39 0 0 32 30 0 0 24 31 0 0 42 39 0 0 36 34 0 0 24 25 0 0 34 27 0 0 25 30 merge_repeat chromOut nested
chr3 36347315 G T 999 11 11 11 11 11 11 11 11 39 0 0 19 26 0 0 17 35 0 0 14 25 0 0 20 33 0 0 22 29 0 0 19 29 0 0 22 45 0 0 20 27 @
chr3 37366429 C A 999 11 11 11 11 11 11 11 11 51 0 0 28 23 0 0 24 32 0 0 26 34 0 0 48 31 0 0 29 27 0 0 24 37 0 0 41 30 0 0 30 23 merge_repeat chromOut
chr3 38024458 A C 999 11 11 11 11 11 11 11 11 34 0 0 23 18 0 0 24 15 0 0 19 15 0 0 28 16 0 0 32 14 0 0 21 16 0 0 31 7 0 0 17 19 merge_repeat chromOut
chr3 38024459 A C 999 11 11 11 11 11 11 11 11 35 0 0 24 18 0 0 24 15 0 0 20 15 0 0 28 16 0 0 32 14 0 0 21 16 0 0 32 7 0 0 17 19 merge_repeat chromOut
chr3 38730709 G C 999 11 11 11 11 11 11 11 11 47 0 0 40 22 0 0 27 23 0 0 29 18 0 0 35 25 0 0 30 31 0 0 33 29 0 0 35 16 0 0 37 22 merge_repeat chromOut
chr3 40672009 C A 999 11 11 11 11 11 11 11 11 39 0 0 32 23 0 0 31 25 0 0 27 24 0 0 22 17 0 0 22 19 0 0 25 26 0 0 29 18 0 0 30 24 @
chr3 40672540 C A 999 11 11 11 11 11 11 11 11 39 0 0 25 22 0 0 20 29 0 0 23 20 0 0 21 25 0 0 24 28 0 0 20 25 0 0 23 23 0 0 15 24 @
chr3 40681611 G A 999 11 11 11 11 11 11 11 11 57 0 0 34 23 0 0 34 31 0 0 40 34 0 0 38 42 0 0 31 31 0 0 35 40 0 0 50 28 0 0 40 35 @
chr3 40787138 C A 999 11 11 11 11 11 11 11 11 48 0 0 29 50 0 0 26 48 0 0 27 32 0 0 31 37 0 0 36 30 0 0 23 38 0 0 25 23 0 0 30 36 @
chr3 41159763 C A 999 11 11 11 11 11 11 11 11 28 0 0 30 7 0 0 30 6 0 0 19 9 0 0 23 9 0 0 20 11 0 0 22 9 0 0 21 8 0 0 19 9 @
chr3 41313315 A C 999 11 11 11 11 11 11 11 11 50 0 0 9 41 0 0 25 41 0 0 24 49 0 0 24 40 0 0 36 44 0 0 18 45 0 0 19 44 0 0 29 41 merge_repeat nested
chr3 41365542 C G 999 11 11 11 11 11 11 11 11 49 0 0 24 25 0 0 36 24 0 0 31 29 0 0 49 24 0 0 45 20 0 0 32 20 0 0 31 21 0 0 36 32 @
chr3 42139868 C T 999 11 11 11 11 11 11 11 11 55 0 0 24 41 0 0 40 38 0 0 30 31 0 0 29 28 0 0 29 34 0 0 35 38 0 0 21 34 0 0 37 43 @
chr3 42139884 C A 999 11 11 11 11 11 11 11 11 53 0 0 24 45 0 0 37 39 0 0 29 36 0 0 28 27 0 0 28 31 0 0 32 40 0 0 23 30 0 0 39 42 @
chr3 42141388 G A 999 11 11 11 11 11 11 11 11 29 0 0 29 19 0 0 28 12 0 0 29 17 0 0 39 15 0 0 25 22 0 0 27 14 0 0 30 12 0 0 19 10 @
chr3 42179054 A T 999 11 11 11 11 11 11 11 11 43 0 0 22 31 0 0 36 15 0 0 24 25 0 0 22 31 0 0 23 21 0 0 24 19 0 0 38 27 0 0 22 23 merge_repeat chromOut nested
chr3 44976908 T G 999 11 11 11 11 11 11 11 11 43 0 0 24 36 0 0 14 29 0 0 21 28 0 0 25 40 0 0 27 29 0 0 21 27 0 0 22 28 0 0 27 20 merge_repeat chromOut nested
chr3 45258901 A T 999 11 11 11 11 11 11 11 11 31 0 0 16 18 0 0 19 25 0 0 12 21 0 0 22 23 1 0 15 22 0 0 18 13 0 0 16 17 0 0 19 16 merge_repeat chromOut nested
chr3 45548292 G A 999 11 11 11 11 11 11 11 11 27 0 0 19 25 0 0 19 15 0 0 22 21 0 0 21 17 0 0 16 17 0 0 11 16 0 0 18 19 0 0 25 19 merge_repeat trfMask chromOut simple
chr3 48671154 T C 999 11 11 11 11 11 11 11 11 37 0 0 27 21 0 0 20 17 0 0 24 26 0 0 26 33 0 0 30 29 0 0 23 21 0 0 34 19 0 0 23 20 merge_repeat chromOut
chr3 49297172 T C 999 11 11 11 11 11 11 11 11 38 0 0 23 35 0 0 18 36 0 0 26 35 0 0 20 24 0 0 21 27 0 0 21 17 0 0 21 25 0 0 27 27 @
chr3 50461067 G A 999 11 11 11 11 11 11 11 11 39 0 0 25 21 0 0 35 17 0 0 26 19 0 0 25 28 0 0 34 26 0 0 24 15 0 0 31 19 0 0 28 18 merge_repeat chromOut nested
chr3 52213818 A G 999 11 11 11 11 11 11 11 11 25 0 0 19 6 0 0 23 16 0 0 22 13 0 0 24 14 0 0 26 15 0 0 21 12 0 0 21 10 0 0 17 13 @
chr3 54224519 A T 999 11 11 11 11 11 11 11 11 23 0 0 3 21 0 0 6 18 0 0 5 18 0 0 3 23 0 0 8 21 0 0 5 20 0 0 8 19 0 0 6 18 @
chr3 54573999 C T 999 11 11 11 11 11 11 11 11 37 0 0 26 20 0 0 23 17 0 0 22 21 0 0 31 25 0 0 32 28 0 0 35 13 0 0 28 22 0 0 21 16 merge_repeat trfMask chromOut simple
chr3 54815461 A G 999 11 11 11 11 11 11 11 11 60 0 0 31 34 0 0 35 35 0 0 27 44 0 0 41 29 0 0 30 34 0 1 32 30 0 0 32 28 0 0 34 27 merge_repeat chromOut
chr3 54914906 A G 999 11 11 11 11 11 11 11 11 44 0 0 30 14 0 0 23 25 0 0 40 26 0 0 28 25 0 0 28 27 0 0 28 23 0 0 31 20 0 0 24 26 @
chr3 55764730 A G 999 11 11 11 11 11 11 11 11 53 0 0 37 34 0 0 32 25 0 0 29 27 0 0 35 40 0 0 32 27 0 0 30 31 0 0 18 35 0 0 32 22 @
chr3 58264279 C G 999 11 11 11 11 11 11 11 11 36 0 0 18 22 0 0 18 18 0 0 24 15 0 0 18 23 0 0 16 29 0 0 21 25 0 0 26 24 0 0 25 19 merge_repeat chromOut
chr3 58869288 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 1 10 12 0 0 14 19 0 0 12 10 0 0 11 17 0 1 17 8 0 0 12 15 @
chr3 58869290 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 17 0 0 17 8 0 0 12 15 @
chr3 58869292 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 17 0 0 17 8 0 0 12 15 @
chr3 58869294 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 17 0 0 17 8 0 0 12 15 @
chr3 58869296 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 16 0 0 17 8 0 0 12 15 @
chr3 58869298 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 17 0 0 17 8 0 0 12 15 @
chr3 58869300 G C 999 11 11 11 11 11 11 11 11 20 0 0 11 9 0 0 10 11 0 0 10 12 0 0 14 19 0 0 12 10 0 0 11 18 0 0 17 8 0 0 12 15 @
chr3 59610844 T C 999 11 11 11 11 11 11 11 11 55 0 0 29 37 0 0 33 30 1 0 38 35 0 0 33 26 1 2 25 44 1 0 22 32 0 0 25 34 1 0 40 38 merge_repeat chromOut nested
chr3 59612331 T A 999 11 11 11 11 11 11 11 11 43 0 0 33 22 0 0 32 27 0 0 36 25 0 0 25 30 0 0 37 26 0 0 22 21 0 0 48 24 1 0 26 19 merge_repeat chromOut nested
chr3 61903569 G T 999 11 11 11 11 11 11 11 11 49 0 0 31 25 0 0 37 21 0 0 30 20 0 0 34 34 0 0 34 25 0 0 32 17 0 0 22 27 0 0 39 29 merge_repeat chromOut
chr3 62098337 C T 999 11 11 11 11 11 11 11 11 41 0 0 24 21 0 0 20 24 0 0 37 30 0 0 40 34 0 0 36 24 0 0 32 29 0 0 28 21 0 0 23 18 @
chr3 62733710 G T 999 11 11 11 11 11 11 11 11 36 0 0 33 29 0 0 23 20 0 0 26 24 0 0 29 23 0 0 22 24 0 0 29 22 0 0 22 14 0 0 32 23 @
chr3 63248770 T C 999 11 11 11 11 11 11 11 11 53 0 0 39 19 0 0 43 23 0 0 25 29 0 0 34 36 0 0 28 27 0 0 28 29 0 0 34 19 0 0 43 30 merge_repeat chromOut nested
chr3 64069615 C T 999 11 11 11 11 11 11 11 11 51 0 0 19 39 0 0 25 40 0 0 39 33 0 0 23 28 0 0 34 30 0 0 37 36 0 0 27 33 0 0 41 25 merge_repeat chromOut nested
chr3 64292324 A C 999 11 11 11 11 11 11 11 11 48 0 0 30 37 0 0 27 33 0 0 30 31 0 0 27 33 0 0 31 33 0 0 24 24 0 0 40 29 0 0 27 28 merge_repeat chromOut
chr3 65573508 A T 999 11 11 11 11 11 11 11 11 20 0 0 7 13 0 0 7 17 0 0 6 14 0 0 14 14 0 0 3 25 0 0 4 17 0 0 1 20 0 0 7 17 merge_repeat chromOut simple
chr3 66154431 T G 999 11 11 11 11 11 11 11 11 32 0 0 19 29 0 0 22 27 0 0 17 21 0 0 21 23 0 0 20 26 0 0 14 18 0 0 15 24 0 0 17 20 merge_repeat chromOut
chr3 66154433 G T 999 11 11 11 11 11 11 11 11 32 0 0 17 28 0 0 22 27 0 0 16 21 0 0 21 23 0 0 18 26 0 0 14 18 0 0 15 24 0 0 17 21 merge_repeat chromOut
chr3 66799970 G T 999 11 11 11 11 11 11 11 11 37 0 0 23 18 0 0 29 29 0 0 21 24 0 0 24 20 0 0 20 36 0 0 19 18 0 0 18 21 0 0 28 24 merge_repeat chromOut nested
chr3 67483256 T C 999 11 11 11 11 11 11 11 11 53 0 0 26 31 0 0 32 24 0 0 33 22 0 0 40 35 0 0 31 28 0 0 44 32 0 0 30 29 0 0 25 28 @
chr3 67845813 T A 999 11 11 11 11 11 11 11 11 33 0 0 13 31 0 0 27 29 0 0 14 24 0 0 20 29 0 0 12 23 0 0 15 28 0 0 18 33 0 0 17 16 merge_repeat chromOut
chr3 69205919 A C 999 11 11 11 11 11 11 11 11 39 0 0 28 29 0 0 29 21 0 0 25 30 0 0 24 15 0 0 34 37 0 0 32 27 0 0 35 19 0 0 22 22 @
chr3 71296597 G C 999 11 11 11 11 11 11 11 11 50 0 0 36 22 0 0 32 21 0 0 28 36 0 0 32 38 0 0 26 32 0 0 26 24 0 0 35 31 0 0 35 37 merge_repeat chromOut nested
chr3 71313781 A G 999 11 11 11 11 11 11 11 11 43 0 0 19 31 0 0 29 31 0 0 18 31 0 0 33 32 0 0 28 25 0 0 20 23 0 0 35 31 0 0 29 28 merge_repeat chromOut nested
chr3 72445789 A C 999 11 11 11 11 11 11 11 11 23 0 1 4 18 0 0 7 19 0 0 6 17 0 0 10 19 0 0 16 27 0 1 16 18 0 0 9 23 0 0 13 24 merge_repeat trfMask chromOut simple
chr3 74177912 A C 999 11 11 11 11 11 11 11 11 55 0 0 21 34 0 0 23 34 0 0 30 26 0 0 21 37 0 0 25 36 0 0 27 36 0 0 19 42 0 0 27 35 @
chr3 76280569 G C 999 11 11 11 11 11 11 11 11 54 0 0 38 24 0 0 40 24 0 0 35 19 0 0 33 32 0 0 29 34 0 0 36 33 0 0 29 34 0 0 43 26 @
chr3 76614294 G A 999 11 11 11 11 11 11 11 11 63 0 0 27 36 0 0 31 51 0 0 26 39 0 0 26 50 0 0 34 43 0 0 33 30 0 0 30 33 0 0 22 51 merge_repeat nested
chr3 84626662 A C 999 11 11 11 11 11 11 11 11 25 0 0 18 21 0 0 12 16 0 0 15 10 0 0 22 20 0 0 24 30 0 0 25 22 0 0 16 28 0 0 23 15 merge_repeat trfMask chromOut simple
chr3 84627487 G A 999 11 11 11 11 11 11 11 11 38 0 0 38 17 0 0 26 12 0 0 32 29 0 0 28 23 0 0 31 21 0 0 23 18 0 0 25 13 0 0 26 14 merge_repeat chromOut
chr3 86394356 G A 999 11 11 11 11 11 11 11 11 61 0 0 41 46 0 0 36 37 0 0 43 41 0 0 42 36 0 0 29 32 0 0 31 34 0 0 42 42 0 0 42 45 @
chr3 87245508 C A 999 11 11 11 11 11 11 11 11 25 0 0 26 7 0 0 14 14 0 0 20 7 0 0 28 10 0 0 18 7 0 0 22 12 0 0 20 6 0 0 23 6 @
chr3 87902598 T C 999 11 11 11 11 11 11 11 11 23 0 0 24 4 0 0 20 6 1 0 19 3 0 0 26 6 0 0 22 4 0 0 22 2 0 0 21 6 1 0 19 4 merge_repeat chromOut nested
chr3 87952013 A C 999 11 11 11 11 11 11 11 11 22 0 0 10 13 0 0 18 20 0 0 15 18 0 0 14 19 1 0 13 15 1 0 21 19 0 0 9 13 0 0 20 17 merge_repeat chromOut
chr3 88362841 C A 999 11 11 11 11 11 11 11 11 51 0 0 34 32 0 0 33 19 0 0 35 26 0 0 37 22 0 0 26 25 0 0 31 31 0 0 38 29 0 0 44 26 @
chr3 88512566 T C 999 11 11 11 11 11 11 11 11 36 0 0 22 14 0 0 22 27 0 0 25 21 0 0 18 26 0 0 20 30 0 0 21 20 0 0 29 28 0 0 22 24 @
chr3 88967081 T C 999 11 11 11 11 11 11 11 11 44 0 0 29 34 0 0 40 28 0 0 31 23 0 0 34 34 0 0 32 45 0 0 26 26 0 0 31 32 0 0 21 23 merge_repeat chromOut
chr3 89918690 C A 999 11 11 11 11 11 11 11 11 28 0 0 18 17 0 0 23 23 0 0 21 21 0 1 27 21 0 0 25 25 0 1 16 21 1 0 15 12 0 0 18 15 @
chr3 90783315 G A 999 11 11 11 11 11 11 11 11 35 0 0 25 32 0 0 21 33 0 0 25 24 0 0 29 29 0 0 21 31 0 0 21 30 0 0 31 34 0 0 19 16 merge_repeat chromOut nested segmentDup
chr3 94701606 T C 999 11 11 11 11 11 11 11 11 24 0 0 15 22 0 0 13 20 0 0 12 13 0 0 20 18 0 0 16 13 0 0 13 15 0 0 15 9 0 0 18 18 merge_repeat chromOut nested segmentDup
chr3 94895707 A C 999 11 11 11 11 11 11 11 11 26 0 0 20 9 0 0 18 20 0 0 19 19 0 0 22 17 0 0 20 24 0 0 11 15 0 0 22 11 0 0 18 9 @
chr3 94895710 A G 999 11 11 11 11 11 11 11 11 22 0 0 15 7 0 0 16 19 0 0 17 17 0 0 20 17 0 0 17 24 0 0 10 15 0 0 19 11 0 0 16 9 @
chr3 94895713 A G 999 11 11 11 11 11 11 11 11 22 0 0 15 7 0 0 16 19 0 0 17 17 0 0 20 17 0 0 17 24 0 0 10 15 0 0 19 11 0 0 16 9 @
chr3 94895714 A C 999 11 11 11 11 11 11 11 11 22 0 0 15 7 0 0 16 19 0 0 17 17 0 0 20 17 0 0 17 24 0 0 10 15 0 0 19 11 0 0 16 9 @
chr3 94895722 T G 999 11 11 11 11 11 11 11 11 20 0 0 13 7 0 0 14 19 0 0 15 17 0 0 18 17 0 0 14 24 0 0 6 15 0 0 19 11 0 0 13 9 @
chr3 94895772 C A 999 11 11 11 11 11 11 11 11 43 0 0 27 21 0 0 22 36 0 0 25 30 0 0 33 34 0 0 27 44 0 0 15 28 0 0 20 34 0 0 26 27 @
chr3 95345876 C A 999 11 11 11 11 11 11 11 11 22 0 0 17 8 0 0 16 19 0 0 15 13 0 0 17 24 0 0 18 21 0 0 11 16 0 0 17 21 0 0 13 9 merge_repeat chromOut simple
chr3 95533935 C G 999 11 11 11 11 11 11 11 11 49 0 0 32 27 0 0 32 29 0 0 29 20 0 0 27 42 0 0 32 28 0 0 34 25 0 0 30 26 0 0 25 25 merge_repeat chromOut nested
chr3 95533964 G T 999 11 11 11 11 11 11 11 11 46 0 0 33 34 0 0 30 36 0 0 25 21 0 0 24 40 0 0 28 34 0 0 32 27 0 0 24 32 0 0 26 32 merge_repeat chromOut nested
chr3 95533974 A G 999 11 11 11 11 11 11 11 11 44 0 0 30 35 0 0 33 39 0 0 24 20 0 0 25 40 0 0 25 36 0 0 33 28 0 0 23 33 0 0 28 32 merge_repeat chromOut nested
chr3 95534016 A G 999 11 11 11 11 11 11 11 11 49 0 0 36 43 0 0 28 46 0 0 28 21 0 0 23 38 0 0 23 36 0 0 37 22 0 0 29 34 0 0 29 33 merge_repeat chromOut nested
chr3 95534034 G T 999 11 11 11 11 11 11 11 11 54 0 0 30 46 0 0 29 45 0 0 31 23 0 0 21 38 0 0 27 32 0 0 35 23 0 0 26 36 0 0 24 33 merge_repeat chromOut nested
chr3 95674932 C G 999 11 11 11 11 11 11 11 11 40 0 0 19 29 0 0 24 25 0 0 29 18 0 0 30 26 0 0 24 19 0 0 32 25 0 0 20 20 0 0 24 20 merge_repeat chromOut
chr3 95674943 T G 999 11 11 11 11 11 11 11 11 43 0 0 22 28 0 0 20 25 0 0 25 22 0 0 33 26 0 0 26 20 0 0 32 21 0 0 23 21 0 0 23 20 merge_repeat chromOut
chr3 95678859 C G 999 11 11 11 11 11 11 11 11 47 0 0 32 15 0 0 21 29 0 0 36 20 0 0 32 34 0 0 42 32 0 0 33 20 0 0 33 25 0 0 23 25 @
chr3 95708919 C A 999 11 11 11 11 11 11 11 11 42 0 0 20 22 0 0 22 23 0 0 24 24 0 0 19 31 0 0 32 24 0 0 18 36 0 0 24 21 0 0 15 29 merge_repeat chromOut
chr3 95708944 C A 999 11 11 11 11 11 11 11 11 36 0 0 23 19 0 0 20 19 0 0 27 21 0 0 19 29 0 0 34 22 0 0 20 26 0 0 23 13 0 0 19 25 @
chr3 95708948 C A 999 11 11 11 11 11 11 11 11 37 0 0 23 19 0 0 20 19 0 0 26 21 0 0 19 29 0 0 34 22 0 0 20 26 0 0 23 14 0 0 19 25 @
chr3 95708953 C A 999 11 11 11 11 11 11 11 11 37 0 0 25 20 0 0 23 19 0 0 27 24 0 0 20 30 0 0 34 23 0 0 21 27 0 0 23 14 0 0 19 26 merge_repeat chromOut nested
chr3 95727241 A C 999 11 11 11 11 11 11 11 11 27 0 0 13 14 0 0 23 16 0 0 16 17 0 0 20 18 0 0 24 20 0 0 14 16 0 0 21 23 0 0 20 17 merge_repeat trfMask chromOut simple
chr3 95727243 A T 999 11 11 11 11 11 11 11 11 30 0 0 15 15 0 0 24 16 0 0 15 17 0 0 20 17 0 0 24 21 0 0 15 17 0 0 20 23 0 0 20 19 merge_repeat trfMask chromOut simple
chr3 95737980 C G 999 11 11 11 11 11 11 11 11 30 0 0 31 7 0 0 25 9 0 0 24 6 0 0 22 15 0 0 27 14 0 0 19 13 0 0 21 16 0 0 29 7 @
chr3 95737983 G T 999 11 11 11 11 11 11 11 11 27 0 0 28 7 0 0 25 10 0 0 21 6 0 0 21 15 0 0 27 14 0 0 18 14 0 0 21 16 0 0 27 7 @
chr3 95746478 C T 999 11 11 11 11 11 11 11 11 39 0 0 23 16 0 0 33 16 0 0 33 27 0 0 37 18 0 0 34 21 0 0 33 22 0 0 37 23 0 0 37 25 merge_repeat chromOut
chr3 95746509 G A 999 11 11 11 11 11 11 11 11 39 0 0 23 18 1 0 30 15 0 0 28 20 0 0 31 16 0 0 26 18 0 0 28 11 0 0 28 19 0 0 33 17 @
chr3 95746514 A T 999 11 11 11 11 11 11 11 11 41 0 0 22 19 0 0 32 18 0 0 29 20 0 0 29 16 0 0 28 20 0 0 32 14 0 0 26 20 0 0 32 21 @
chr3 95746524 G C 999 11 11 11 11 11 11 11 11 47 0 0 28 22 0 0 31 21 0 0 30 18 0 0 34 17 0 0 30 19 0 0 36 16 0 0 30 17 0 0 33 20 @
chr3 95777084 A T 999 11 11 11 11 11 11 11 11 41 0 0 31 12 0 0 34 16 0 0 24 17 0 0 24 21 0 0 28 26 0 0 30 29 0 0 28 20 0 0 26 18 merge_repeat chromOut
chr3 95797451 T C 999 11 11 11 11 11 11 11 11 35 0 1 18 26 0 0 12 30 0 0 13 37 0 0 15 37 0 0 24 36 0 0 25 42 0 0 24 29 0 0 11 24 @
chr3 95797476 C A 999 11 11 11 11 11 11 11 11 32 0 0 16 25 0 0 12 24 0 0 10 29 0 0 13 30 0 0 26 30 0 0 20 37 0 0 20 20 0 0 14 18 @
chr3 95821438 C A 999 11 11 11 11 11 11 11 11 48 0 0 42 31 0 0 45 33 0 0 38 35 0 0 39 24 0 0 53 25 0 0 42 22 0 0 38 23 0 0 30 18 @
chr3 95822210 C T 999 11 11 11 11 11 11 11 11 31 0 0 23 24 0 0 21 17 0 0 24 15 0 0 29 15 0 0 19 15 0 0 17 14 0 0 22 23 0 0 24 13 @
chr3 95822342 G T 999 11 11 11 11 11 11 11 11 34 0 0 14 26 0 0 12 24 0 0 18 32 0 0 16 19 0 0 19 33 0 0 13 33 0 0 15 19 0 0 13 28 merge_repeat chromOut
chr3 95826691 A G 999 11 11 11 11 11 11 11 11 35 0 0 29 6 0 0 33 2 0 0 36 16 0 0 43 20 0 0 29 17 0 0 34 8 0 0 36 10 0 0 31 5 merge_repeat chromOut
chr3 95831458 G T 999 11 11 11 11 11 11 11 11 33 0 0 21 27 0 0 17 22 0 0 21 30 0 1 23 23 0 0 24 27 0 0 16 17 1 0 27 31 0 0 20 31 merge_repeat chromOut
chr3 95831461 G T 999 11 11 11 11 11 11 11 11 34 0 0 21 27 0 0 19 23 0 0 25 30 0 0 25 24 0 0 28 27 0 0 17 17 0 0 28 31 0 0 22 32 merge_repeat chromOut
chr3 95831519 T C 999 11 11 11 11 11 11 11 11 38 0 0 23 24 0 0 21 17 0 0 24 25 0 0 26 21 0 0 23 17 0 0 22 16 0 0 23 23 0 0 20 25 merge_repeat chromOut
chr3 95831522 T C 999 11 11 11 11 11 11 11 11 38 0 0 23 24 0 0 21 18 0 0 25 25 0 0 26 21 0 0 23 17 0 0 22 16 0 0 22 22 0 0 19 25 merge_repeat chromOut
chr3 95831525 T C 999 11 11 11 11 11 11 11 11 39 0 0 23 25 0 0 21 19 0 0 25 25 0 0 26 21 0 0 23 18 1 0 22 16 0 1 22 23 0 0 19 25 merge_repeat chromOut
chr3 95935823 G A 999 11 11 11 11 11 11 11 11 47 0 0 40 31 0 0 18 31 0 0 23 24 0 0 26 37 0 0 24 30 0 0 26 24 0 0 27 28 0 0 16 31 merge_repeat chromOut
chr3 96075115 T C 999 11 11 11 11 11 11 11 11 46 0 0 25 32 0 0 29 49 0 0 25 22 0 0 16 30 0 0 33 32 0 0 22 32 0 0 25 36 0 0 20 33 merge_repeat chromOut
chr3 96123489 G T 999 11 11 11 11 11 11 11 11 54 0 0 34 30 0 0 33 31 0 0 36 29 0 0 42 43 0 0 27 34 0 0 28 26 0 0 43 37 0 0 38 31 @
chr3 96787719 C T 999 11 11 11 11 11 11 11 11 20 0 0 28 2 0 0 27 5 0 0 18 3 0 0 27 11 0 0 24 8 0 0 22 10 0 0 17 3 0 0 18 9 @
chr3 97372981 A G 999 11 11 11 11 11 11 11 11 51 0 0 38 13 0 0 31 23 0 0 34 20 0 0 40 24 0 0 35 31 0 0 31 20 0 0 37 20 0 0 34 20 merge_repeat chromOut
chr3 97495773 T G 999 11 11 11 11 11 11 11 11 42 0 0 38 21 0 0 32 18 0 0 31 21 0 0 23 21 0 0 34 17 0 0 35 23 0 0 35 16 0 0 23 19 merge_repeat chromOut nested
chr3 97532017 G T 999 11 11 11 11 11 11 11 11 38 0 0 20 23 0 0 19 27 0 0 24 14 0 0 33 27 0 0 21 32 0 0 23 24 0 0 30 24 0 0 27 23 @
chr3 98393243 T A 999 11 11 11 11 11 11 11 11 31 0 0 17 25 0 0 22 21 0 0 10 31 0 0 19 16 0 0 25 25 0 0 16 15 0 0 16 15 0 0 16 20 merge_repeat trfMask chromOut simple
chr3 100581546 T C 999 11 11 11 11 11 11 11 11 57 0 0 27 34 0 0 23 34 0 0 32 30 0 0 39 44 0 0 35 35 0 0 38 29 0 0 35 38 0 0 36 26 @
chr3 102030399 C A 999 11 11 11 11 11 11 11 11 44 0 0 33 16 0 0 21 23 0 0 38 22 0 0 37 20 0 0 32 24 0 0 31 18 1 1 30 22 0 0 37 25 merge_repeat trfMask chromOut simple
chr3 102030423 C A 999 11 11 11 11 11 11 11 11 32 1 0 34 15 0 1 15 16 0 0 40 15 0 0 34 19 1 0 40 22 1 0 32 11 0 0 27 16 2 0 34 23 merge_repeat trfMask chromOut simple
chr3 102030539 G A 999 11 11 11 11 11 11 11 11 36 0 0 25 12 0 0 33 12 0 0 37 14 0 1 36 14 0 0 36 17 0 0 34 14 0 0 27 9 0 0 38 14 merge_repeat trfMask chromOut simple
chr3 102030854 T C 999 11 11 11 11 11 11 11 11 61 0 0 37 38 0 0 43 34 0 0 29 38 0 0 48 43 0 0 45 39 0 0 24 37 0 0 35 39 0 0 36 35 merge_repeat chromOut
chr3 105924913 A G 999 11 11 11 11 11 11 11 11 44 0 0 32 30 0 0 38 26 0 0 24 20 0 0 38 30 0 0 38 21 0 0 27 20 0 0 33 25 0 0 27 25 merge_repeat chromOut
chr3 107581375 A C 999 11 11 11 11 11 11 11 11 35 0 0 25 19 0 0 22 18 0 0 17 19 0 0 21 15 0 0 39 20 0 0 24 21 0 0 14 21 0 0 18 17 @
chr3 110323265 A T 999 11 11 11 11 11 11 11 11 36 1 0 23 17 0 0 28 31 0 0 17 24 0 0 18 26 1 0 18 26 1 0 16 23 0 1 21 14 0 0 18 19 merge_repeat chromOut
chr3 115292408 A G 999 11 11 11 11 11 11 11 11 31 0 0 34 18 0 0 23 19 0 0 27 22 0 0 32 24 0 0 29 27 0 0 15 16 0 0 16 17 0 0 29 18 merge_repeat trfMask chromOut simple
chr3 116159872 G T 999 11 11 11 11 11 11 11 11 28 0 0 13 23 0 0 12 16 0 0 12 24 0 0 15 25 0 0 20 33 0 0 18 30 0 0 10 22 0 0 11 27 merge_repeat trfMask chromOut simple nested
chr3 116159912 A G 999 11 11 11 11 11 11 11 11 29 0 0 11 25 0 0 13 18 0 0 10 22 0 0 13 28 0 0 30 26 0 0 14 26 0 0 8 21 0 0 18 22 merge_repeat trfMask chromOut simple nested
chr3 116159923 A G 999 11 11 11 11 11 11 11 11 26 0 0 12 18 0 0 13 17 0 0 10 16 0 0 13 25 0 0 33 22 0 0 14 22 0 0 9 18 0 0 14 20 merge_repeat trfMask chromOut simple nested
chr3 116159925 G T 999 11 11 11 11 11 11 11 11 25 0 0 12 18 0 0 12 17 0 0 9 16 0 0 12 25 0 0 31 22 0 0 14 23 0 0 9 18 0 0 14 20 merge_repeat trfMask chromOut simple nested
chr3 116159952 A G 999 11 11 11 11 11 11 11 11 23 0 0 11 22 0 0 10 16 0 0 8 15 0 0 16 27 0 0 25 16 0 0 11 23 0 0 12 25 0 0 14 25 merge_repeat trfMask chromOut simple nested
chr3 116159965 G T 999 11 11 11 11 11 11 11 11 21 0 0 10 20 0 0 8 15 0 0 7 14 0 0 17 28 0 0 23 17 0 0 10 20 0 0 14 21 0 0 15 23 merge_repeat trfMask chromOut simple nested
chr3 116198255 T C 999 11 11 11 11 11 11 11 11 31 0 0 10 21 0 0 9 36 0 0 10 26 0 0 23 32 0 0 19 45 0 0 10 32 0 0 10 25 0 0 14 31 merge_repeat chromOut nested
chr3 116267342 G A 999 11 11 11 11 11 11 11 11 36 0 0 10 26 0 0 20 28 0 0 12 37 1 0 28 32 0 0 20 33 0 0 24 38 0 0 16 35 0 0 23 49 merge_repeat trfMask chromOut simple nested
chr3 117160971 T C 999 11 11 11 11 11 11 11 11 42 0 0 20 27 0 0 17 29 0 0 24 20 0 0 21 25 0 0 26 36 0 0 20 23 0 0 20 29 0 0 20 22 merge_repeat chromOut
chr3 117270415 T A 999 11 11 11 11 11 11 11 11 29 0 0 22 15 0 0 20 16 0 0 23 22 0 0 20 10 0 0 22 14 0 0 17 17 0 0 18 11 0 0 20 11 merge_repeat chromOut nested
chr3 117270428 G A 999 11 11 11 11 11 11 11 11 33 0 0 22 16 0 0 25 17 0 0 30 24 0 0 24 13 0 0 32 15 0 0 20 18 0 0 23 10 0 0 23 15 merge_repeat chromOut nested
chr3 117270434 G A 999 11 11 11 11 11 11 11 11 35 0 0 24 17 0 0 26 18 0 0 30 22 0 0 25 16 0 0 34 15 0 0 21 18 0 0 25 10 0 0 26 15 merge_repeat nested
chr3 118263634 A C 999 11 11 11 11 11 11 11 11 64 0 0 45 36 0 0 45 28 0 0 28 36 0 0 39 30 0 0 33 45 0 0 34 32 0 0 38 37 0 0 36 33 @
chr3 119108318 A G 999 11 11 11 11 11 11 11 11 54 0 0 34 30 0 0 35 30 0 0 33 23 0 0 37 23 0 0 42 27 0 0 31 26 0 0 27 28 0 0 32 22 @
chr3 122625068 C A 999 11 11 11 11 11 11 11 11 38 0 0 35 26 0 0 33 33 0 0 29 22 0 0 40 15 0 0 35 28 0 0 35 26 0 0 33 27 0 0 19 19 @
chr3 122625239 C A 999 11 11 11 11 11 11 11 11 25 0 0 32 4 0 0 20 7 0 0 26 8 0 0 16 9 0 0 19 14 0 0 28 9 0 0 24 9 0 0 23 6 merge_repeat chromOut
chr3 123170629 A C 999 11 11 11 11 11 11 11 11 58 0 0 36 29 0 0 37 30 0 0 33 34 0 0 52 25 0 0 40 28 0 0 43 16 0 0 35 26 0 0 32 26 merge_repeat trfMask chromOut simple
chr3 123170630 C A 999 11 11 11 11 11 11 11 11 58 0 0 36 29 0 0 37 30 0 0 33 34 0 0 52 25 0 0 40 28 0 0 43 15 0 0 35 26 0 0 32 26 merge_repeat trfMask chromOut simple
chr3 124795721 A C 999 11 11 11 11 11 11 11 11 53 0 0 42 36 0 0 39 25 0 0 35 19 0 0 39 26 0 0 43 25 0 0 28 25 0 0 39 36 0 0 39 30 @
chr3 125343649 G T 999 11 11 11 11 11 11 11 11 25 0 0 6 19 0 0 10 18 0 0 10 17 0 0 14 19 0 0 8 20 0 0 12 27 0 0 13 24 0 0 6 21 merge_repeat chromOut
chr3 126221500 C A 999 11 11 11 11 11 11 11 11 56 0 0 38 36 0 0 32 24 0 0 35 23 0 0 28 29 0 0 34 24 0 0 30 30 0 0 32 40 0 0 43 25 merge_repeat chromOut nested
chr3 128347786 A G 999 11 11 11 11 11 11 11 11 50 0 0 42 34 0 0 35 37 0 0 25 25 0 0 34 45 0 0 28 35 0 0 33 35 0 0 38 38 0 0 23 38 @
chr3 131371863 G C 999 11 11 11 11 11 11 11 11 53 0 0 37 40 0 0 23 31 0 0 21 34 0 0 33 30 0 0 33 20 0 0 27 35 0 0 31 29 0 0 29 45 @
chr3 131372185 T C 999 11 11 11 11 11 11 11 11 33 0 0 19 24 0 0 20 15 0 0 19 14 0 0 26 24 0 0 25 19 0 0 26 19 0 0 28 20 0 0 16 17 @
chr3 131372188 G A 999 11 11 11 11 11 11 11 11 32 0 0 19 24 0 0 20 15 0 0 19 14 0 0 25 24 0 0 23 19 0 0 24 19 0 0 23 19 0 0 15 17 @
chr3 131372190 G T 999 11 11 11 11 11 11 11 11 32 0 0 19 24 0 0 20 15 0 0 19 14 0 0 25 24 0 0 23 19 0 0 24 19 0 0 23 19 0 0 15 17 @
chr3 131372192 A G 999 11 11 11 11 11 11 11 11 32 0 0 19 24 0 0 20 15 0 0 19 14 0 0 25 24 0 0 23 19 0 0 24 19 0 0 23 19 0 0 15 17 @
chr3 132284358 C T 999 11 11 11 11 11 11 11 11 46 0 0 39 21 0 0 44 18 0 0 28 18 0 0 45 28 0 0 45 23 0 0 41 28 0 0 46 18 0 0 28 22 @
chr3 133137206 A G 999 11 11 11 11 11 11 11 11 40 0 0 26 31 0 0 27 33 0 0 27 27 0 0 40 27 0 0 36 26 0 0 33 21 0 0 40 25 0 0 20 20 @
chr3 133569687 G A 999 11 11 11 11 11 11 11 11 48 0 0 36 27 0 0 23 30 0 0 36 30 0 0 29 27 0 0 19 35 0 0 33 23 0 0 40 20 0 0 21 27 merge_repeat chromOut
chr3 134970473 A C 999 11 11 11 11 11 11 11 11 58 0 0 25 35 0 0 35 33 0 0 47 32 0 0 54 34 0 0 39 35 0 0 37 40 0 0 33 39 0 0 27 31 @
chr3 135299625 T C 999 11 11 11 11 11 11 11 11 27 0 0 37 1 0 0 32 1 0 0 26 5 0 0 33 6 0 0 30 4 0 0 36 5 0 0 28 3 0 0 25 2 @
chr3 136426805 G C 999 11 11 11 11 11 11 11 11 23 0 0 18 5 0 0 18 14 0 0 30 9 0 0 26 8 0 0 21 12 0 0 33 13 0 0 18 8 0 0 19 13 @
chr3 138315342 G T 999 11 11 11 11 11 11 11 11 48 0 0 29 46 0 0 26 27 0 0 27 39 0 0 17 31 0 0 25 31 0 0 36 31 0 0 33 40 0 0 27 39 merge_repeat chromOut
chr3 138320311 C T 999 11 11 11 11 11 11 11 11 42 0 0 31 21 0 0 24 22 0 0 30 20 0 0 41 21 0 0 22 33 0 0 22 20 0 0 26 19 0 0 22 25 merge_repeat chromOut
chr3 138320341 G A 999 11 11 11 11 11 11 11 11 39 0 0 32 22 0 0 21 18 1 0 24 21 0 0 36 23 2 0 22 35 0 0 24 23 0 0 22 23 1 0 21 31 merge_repeat chromOut
chr3 138320485 C A 999 11 11 11 11 11 11 11 11 30 0 0 26 21 0 0 13 21 0 0 19 19 0 0 13 24 0 0 16 14 0 0 21 21 0 0 19 16 0 0 16 16 merge_repeat chromOut
chr3 138323265 C A 999 11 11 11 11 11 11 11 11 60 0 0 30 34 0 0 32 40 0 0 28 45 0 0 27 41 0 0 29 35 0 0 36 34 0 0 31 29 0 0 33 35 @
chr3 138323287 C A 999 11 11 11 11 11 11 11 11 63 0 0 31 33 0 0 32 44 0 0 30 47 0 0 27 44 0 0 30 35 0 0 30 33 0 0 38 25 0 0 32 37 @
chr3 138418436 A G 999 11 11 11 11 11 11 11 11 23 0 0 9 21 0 0 8 20 0 0 11 12 0 0 11 23 0 0 18 15 0 0 11 17 0 0 13 14 0 0 16 11 @
chr3 138425817 G T 999 11 11 11 11 11 11 11 11 47 0 0 35 25 0 0 31 28 0 0 38 29 0 0 26 31 0 0 23 28 0 0 30 25 0 0 29 31 0 0 23 24 @
chr3 138489144 A C 999 11 11 11 11 11 11 11 11 35 0 0 21 22 0 0 18 22 0 0 19 16 0 0 14 36 0 0 15 28 0 0 19 27 0 0 13 32 0 0 17 32 @
chr3 138926012 C A 999 11 11 11 11 11 11 11 11 61 0 0 32 38 0 0 30 42 0 0 35 32 0 0 37 40 0 0 35 41 0 0 29 32 0 0 29 47 0 0 46 28 @
chr3 139062045 A T 999 11 11 11 11 11 11 11 11 33 0 0 23 10 0 0 29 20 0 0 20 16 0 0 20 15 0 0 29 21 0 0 21 15 0 0 18 16 0 0 28 18 merge_repeat trfMask chromOut simple
chr3 141365432 T C 999 11 11 11 11 11 11 11 11 54 0 0 40 24 0 0 37 23 0 0 22 32 0 0 42 19 0 0 36 35 0 0 37 31 0 0 38 23 0 0 29 33 @
chr3 142432468 C T 999 11 11 11 11 11 11 11 11 31 0 0 6 25 0 0 10 27 0 0 8 34 0 0 18 27 0 0 18 25 0 0 5 27 0 1 14 22 0 0 9 23 merge_repeat chromOut
chr3 143874533 T A 999 11 11 11 11 11 11 11 11 27 0 0 21 12 0 0 16 25 0 0 19 21 0 0 20 24 0 0 24 15 0 0 19 17 0 0 19 15 0 0 14 13 merge_repeat chromOut
chr3 145214214 C T 999 11 11 11 11 11 11 11 11 29 0 0 19 15 0 0 30 11 0 0 17 19 0 0 27 29 0 0 21 18 0 0 26 18 0 0 16 13 0 0 22 19 merge_repeat chromOut
chr3 145353346 A G 999 11 11 11 11 11 11 11 11 58 0 0 28 43 0 0 27 39 0 0 25 38 0 0 34 35 0 0 33 43 0 0 34 39 0 0 44 28 0 0 26 32 merge_repeat chromOut
chr3 146661093 T C 999 11 11 11 11 11 11 11 11 52 0 0 48 32 0 0 40 24 0 0 44 24 0 0 46 26 0 0 42 37 0 0 31 21 0 0 37 22 0 0 49 31 merge_repeat chromOut
chr3 147248325 T C 999 11 11 11 11 11 11 11 11 57 0 0 33 37 0 0 41 26 0 0 36 21 0 0 29 37 0 0 33 31 0 0 38 38 0 0 26 34 0 0 36 21 @
chr3 147368724 T C 999 11 11 11 11 11 11 11 11 54 0 0 28 36 0 0 32 38 0 0 31 32 0 0 35 30 0 0 31 23 0 0 32 33 0 0 31 36 0 0 29 32 @
chr3 147914562 T A 999 11 11 11 11 11 11 11 11 38 0 0 23 30 0 0 22 16 0 0 29 22 0 0 23 31 0 0 34 32 0 0 25 32 0 0 31 26 0 0 27 22 @
chr3 147914596 C T 999 11 11 11 11 11 11 11 11 47 0 0 25 25 0 0 34 13 0 0 28 21 0 0 34 28 0 0 34 27 0 0 31 24 0 0 42 22 0 0 33 15 @
chr3 147914771 A G 999 11 11 11 11 11 11 11 11 53 0 0 40 20 0 0 41 24 0 0 31 28 0 0 27 26 0 0 44 37 0 0 47 27 0 0 39 21 0 0 37 30 @
chr3 148544412 G A 999 11 11 11 11 11 11 11 11 47 0 0 31 33 0 0 26 35 0 0 30 34 0 0 31 34 0 0 30 28 0 0 36 36 0 0 29 31 0 0 22 25 @
chr3 149147207 G A 999 11 11 11 11 11 11 11 11 36 0 0 20 23 0 0 15 21 0 0 18 22 0 0 15 28 0 0 15 27 0 0 19 28 0 0 21 26 0 0 21 21 @
chr3 150843526 C T 999 11 11 11 11 11 11 11 11 46 0 0 31 37 0 0 27 34 0 0 25 21 0 0 25 33 0 0 27 41 0 0 30 28 0 0 23 46 0 0 24 47 @
chr3 151564508 T G 999 11 11 11 11 11 11 11 11 27 0 0 16 11 2 1 26 26 1 0 10 17 0 1 19 25 0 1 13 13 1 0 10 16 1 0 16 22 1 0 20 22 merge_repeat trfMask chromOut simple
chr3 157032059 T C 999 11 11 11 11 11 11 11 11 37 0 0 32 23 0 0 30 31 0 0 28 24 0 0 51 34 0 0 39 18 0 0 36 25 0 0 17 20 0 0 32 26 @
chr3 158868533 A G 999 11 11 11 11 11 11 11 11 54 0 0 41 34 0 0 37 35 0 0 36 29 0 0 32 34 0 0 33 34 0 0 30 24 0 0 36 31 0 0 27 32 @
chr3 159304906 G T 999 11 11 11 11 11 11 11 11 39 0 0 26 19 0 0 30 14 0 0 31 19 0 0 24 20 0 0 19 20 0 0 29 18 0 0 36 16 0 0 29 11 merge_repeat chromOut nested
chr3 159918809 G T 999 11 11 11 11 11 11 11 11 36 0 0 16 20 0 0 23 33 0 0 25 27 0 0 30 33 0 0 29 19 0 0 24 20 0 0 17 21 0 0 20 19 merge_repeat trfMask chromOut simple
chr3 159925896 C A 999 11 11 11 11 11 11 11 11 34 0 0 43 29 0 0 35 22 0 0 33 20 0 0 34 31 0 0 35 17 0 0 32 23 0 0 29 13 0 0 24 10 @