chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr3	3001059	G	T	999	11 11 11 11 11 11 11 11	46	0	0	26	20	0	0	39	39	0	0	26	30	0	0	40	23	0	0	30	25	0	0	27	28	0	0	35	28	0	0	29	29	merge_repeat			simple
chr3	3003991	G	T	999	11 11 11 11 11 11 11 11	37	0	2	31	31	0	0	32	32	0	0	29	26	0	0	29	23	0	0	20	30	0	0	28	27	0	0	22	15	0	1	26	19	merge_repeat			simple
chr3	3003993	C	T	999	11 11 11 11 11 11 11 11	35	0	2	31	31	0	0	32	32	0	0	29	26	0	0	29	23	0	0	19	29	0	0	28	28	0	0	21	14	0	0	26	21	merge_repeat			simple
chr3	3003995	G	C	999	11 11 11 11 11 11 11 11	35	0	2	31	31	0	0	32	32	0	0	28	26	0	0	29	23	0	0	18	29	0	0	28	28	0	0	21	14	0	0	26	21	merge_repeat			simple
chr3	3003997	C	A	999	11 11 11 11 11 11 11 11	34	0	2	31	31	0	0	32	32	0	0	28	25	0	0	29	23	0	0	18	29	0	0	28	28	0	0	21	13	0	0	26	21	merge_repeat			simple
chr3	3004001	T	A	999	11 11 11 11 11 11 11 11	35	0	2	31	31	0	0	32	32	0	0	28	26	0	0	29	23	0	0	18	29	0	0	28	28	0	0	21	14	0	1	26	20	merge_repeat			simple
chr3	3004078	C	T	999	11 11 11 11 11 11 11 11	46	0	0	30	29	0	0	44	36	0	0	32	36	0	0	23	38	0	0	28	34	0	0	26	22	0	2	28	19	0	0	23	23	merge_repeat			simple
chr3	3004080	C	T	999	11 11 11 11 11 11 11 11	46	0	0	30	29	0	0	44	37	0	0	32	36	1	0	24	38	0	0	28	34	0	0	26	22	0	1	28	20	1	0	22	23	merge_repeat			simple
chr3	3004081	A	C	999	11 11 11 11 11 11 11 11	45	0	0	30	29	0	0	44	37	0	0	32	36	1	0	24	38	0	0	28	34	0	0	26	22	0	2	28	19	1	0	22	22	merge_repeat			simple
chr3	3004120	C	T	999	11 11 11 11 11 11 11 11	48	0	0	26	40	0	0	33	39	0	0	28	36	1	0	24	42	0	0	36	31	0	0	29	24	0	0	36	30	0	0	20	28	merge_repeat			simple
chr3	3004123	A	T	999	11 11 11 11 11 11 11 11	49	0	0	27	44	0	0	33	39	0	0	29	37	1	0	26	43	0	0	36	31	0	0	29	24	0	0	38	31	0	0	20	29	merge_repeat			simple
chr3	3004166	G	C	999	11 11 11 11 11 11 11 11	52	0	1	34	42	0	0	30	37	0	0	24	39	0	0	29	37	0	0	31	30	0	0	23	29	0	0	40	33	0	0	26	28	merge_repeat			simple
chr3	3007317	T	A	999	11 11 11 11 11 11 11 11	50	0	0	35	34	0	0	37	49	0	0	27	35	0	0	40	31	0	0	24	38	0	0	35	24	0	0	31	34	0	0	26	24	merge_repeat			simple
chr3	3009912	T	A	999	11 11 11 11 11 11 11 11	49	0	0	36	36	0	0	35	39	0	0	33	30	0	1	20	30	0	0	39	22	0	0	27	29	0	0	33	45	0	0	28	21	merge_repeat		chromOut	simple
chr3	3009922	C	T	999	11 11 11 11 11 11 11 11	47	0	0	35	34	0	1	34	37	0	0	36	31	0	1	23	28	0	0	37	20	0	0	28	30	0	1	32	46	0	0	28	19	merge_repeat		chromOut	simple
chr3	3009939	G	T	999	11 11 11 11 11 11 11 11	53	0	0	38	34	0	1	32	43	0	0	36	28	0	0	28	27	0	0	33	23	0	0	28	25	0	1	32	40	0	0	28	25	merge_repeat		chromOut	simple
chr3	3009941	G	T	999	11 11 11 11 11 11 11 11	53	0	0	38	35	0	2	32	41	0	0	36	28	0	0	28	28	0	0	32	23	0	0	28	25	0	1	32	41	0	0	28	25	merge_repeat		chromOut	simple
chr3	3009994	G	C	999	11 11 11 11 11 11 11 11	51	0	0	39	27	0	2	26	37	0	0	36	30	0	0	35	34	0	0	27	24	0	1	29	32	0	0	28	32	0	0	23	28	merge_repeat			simple
chr3	3009995	G	T	999	11 11 11 11 11 11 11 11	51	0	0	39	27	0	0	26	37	0	0	37	30	0	1	35	33	0	0	27	24	0	1	29	32	0	0	28	32	0	0	23	28	merge_repeat			simple
chr3	3010053	C	T	999	11 11 11 11 11 11 11 11	55	0	0	39	25	0	0	25	32	0	0	35	27	0	0	38	28	0	0	27	31	0	0	31	28	0	0	30	25	0	0	28	32	merge_repeat			simple
chr3	3010166	A	T	999	11 11 11 11 11 11 11 11	52	0	0	25	35	0	0	34	32	0	0	32	30	0	0	32	20	0	0	35	37	0	0	28	27	1	0	37	24	0	0	35	22	merge_repeat			simple
chr3	3010167	C	A	999	11 11 11 11 11 11 11 11	52	0	0	25	35	0	0	34	32	0	0	32	29	0	0	32	20	0	0	35	36	0	0	28	27	1	0	37	25	0	0	35	22	merge_repeat			simple
chr3	3011826	T	G,A	999	12 12 12 12 12 12 12 12	35	0	0	35	21	0	0	18	37	0	0	21	26	0	0	24	29	0	0	19	16	0	0	17	20	0	0	26	32	0	0	24	21	merge_repeat		chromOut	simple
chr3	4404406	T	G	999	11 11 11 11 11 11 11 11	39	0	0	22	30	0	0	28	29	0	0	31	31	0	0	27	26	0	0	37	29	0	0	19	20	0	0	29	34	0	0	22	25
chr3	5584160	A	T	999	11 11 11 11 11 11 11 11	54	0	0	32	39	0	0	38	33	0	0	34	33	0	0	26	36	0	0	38	37	0	0	25	29	0	0	42	40	0	0	34	32	merge_repeat		chromOut
chr3	6392284	C	A	999	11 11 11 11 11 11 11 11	21	0	0	24	5	0	0	22	3	0	0	23	9	0	0	21	7	0	0	25	3	0	0	15	7	0	0	15	6	0	0	18	3	merge_repeat		chromOut
chr3	6783150	T	A	999	11 11 11 11 11 11 11 11	44	0	0	20	39	0	0	25	37	0	0	16	28	0	0	20	27	0	0	28	39	0	0	21	35	0	0	15	35	0	0	20	31	merge_repeat	trfMask	chromOut	simple	nested
chr3	9325238	A	G	999	11 11 11 11 11 11 11 11	33	0	0	25	17	0	0	30	15	0	0	25	27	0	0	27	19	0	0	23	13	0	0	27	13	0	0	19	17	0	0	23	10
chr3	9788274	G	A	999	11 11 11 11 11 11 11 11	41	0	0	26	16	0	0	21	20	0	0	20	22	0	0	30	12	0	0	27	17	0	0	30	25	0	0	21	21	0	0	28	16
chr3	10151925	T	C	999	11 11 11 11 11 11 11 11	20	0	0	12	22	0	0	16	19	0	0	15	24	0	0	16	17	0	0	16	18	0	0	12	20	0	0	12	18	0	0	6	14
chr3	10322192	T	A	999	11 11 11 11 11 11 11 11	41	0	0	28	31	0	1	21	19	0	0	17	25	0	0	26	33	0	0	25	43	0	1	18	23	0	0	22	22	0	0	20	24	merge_repeat	trfMask	chromOut	simple
chr3	11866284	T	C	999	11 11 11 11 11 11 11 11	52	0	0	26	26	0	0	27	39	0	0	22	34	0	0	15	38	0	0	33	35	0	0	21	36	0	0	25	29	0	0	22	37
chr3	12784644	A	C	999	11 11 11 11 11 11 11 11	22	0	0	16	18	0	0	9	13	0	0	18	24	0	0	15	18	0	0	17	18	0	0	14	14	0	0	16	17	0	0	11	11	merge_repeat	trfMask	chromOut	simple
chr3	15847067	T	G,A	999	12 12 12 12 12 12 12 11	34	0	0	17	17	0	0	22	18	0	0	20	17	0	0	20	32	0	0	11	29	0	0	27	16	0	0	20	19	0	0	21	20	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr3	16764819	A	T	999	11 11 11 11 11 11 11 11	25	0	0	13	20	0	0	10	15	0	0	13	21	0	0	19	28	0	0	18	22	1	1	15	28	0	0	13	24	1	0	12	17	merge_repeat		chromOut		nested
chr3	18035360	G	A	999	11 11 11 11 11 11 11 11	44	0	0	24	32	0	0	42	22	0	0	31	32	0	0	33	28	0	1	29	44	0	0	30	31	0	0	19	25	0	0	40	30	merge_repeat		chromOut		nested
chr3	19572626	C	A	999	11 11 11 11 11 11 11 11	32	0	0	29	6	0	0	26	7	0	0	30	10	0	0	39	11	0	0	30	2	0	1	31	7	0	0	24	8	0	0	26	6	merge_repeat				nested
chr3	19747594	T	C	999	11 11 11 11 11 11 11 11	41	0	0	23	26	0	0	28	31	0	0	22	25	0	0	28	27	0	0	20	31	0	0	25	24	0	0	18	23	0	0	28	26
chr3	19753314	A	G	999	11 11 11 11 11 11 11 11	60	0	0	38	26	0	0	42	29	0	0	51	46	0	0	40	37	0	0	40	28	0	0	24	36	0	0	44	30	0	0	39	31
chr3	19767484	C	A	999	11 11 11 11 11 11 11 11	55	0	0	39	28	0	0	33	42	0	0	35	41	0	0	35	33	0	0	34	32	0	0	32	23	0	0	39	46	0	0	33	28
chr3	19866126	T	C	999	11 11 11 11 11 11 11 11	41	0	0	31	19	0	0	24	17	0	0	26	19	0	0	23	18	0	0	25	25	0	0	34	23	0	0	31	20	0	0	23	21
chr3	21312447	A	G	999	11 11 11 11 11 11 11 11	52	0	0	39	37	0	0	24	41	0	0	24	33	0	0	35	40	0	0	25	31	0	0	17	35	0	0	33	28	0	0	27	33
chr3	21568097	T	C	999	11 11 11 11 11 11 11 11	52	0	0	32	30	0	0	25	27	0	0	33	35	0	0	39	29	0	0	37	31	0	0	34	27	0	0	37	29	0	0	34	29	merge_repeat				nested
chr3	23510739	C	A	999	11 11 11 11 11 11 11 11	50	0	0	29	39	0	0	38	23	0	0	34	37	0	0	35	33	0	0	17	33	0	0	33	30	0	0	26	33	0	0	31	28	merge_repeat			simple
chr3	23824920	T	A	999	11 11 11 11 11 11 11 11	59	0	0	44	40	0	0	52	37	0	0	40	49	0	0	33	47	0	0	44	39	0	0	26	33	0	0	43	37	0	0	49	38
chr3	25941218	A	G	999	11 11 11 11 11 11 11 11	49	0	0	38	36	0	0	20	42	0	0	22	45	0	0	20	30	0	0	34	35	0	0	31	39	0	0	32	32	0	0	25	24
chr3	25999892	C	T	999	11 11 11 11 11 11 11 11	45	0	0	26	31	0	0	21	24	0	0	23	26	0	0	31	27	0	0	26	28	0	0	25	40	0	0	30	27	0	0	36	20
chr3	26492124	G	T	999	11 11 11 11 11 11 11 11	31	0	0	19	26	1	0	11	26	0	0	15	16	1	0	16	22	1	0	18	20	1	0	17	13	0	0	17	18	1	0	21	16	merge_repeat	trfMask	chromOut	simple
chr3	27482858	A	G	999	11 11 11 11 11 11 11 11	27	0	0	16	16	0	0	15	17	0	0	12	24	0	0	12	26	0	0	13	16	0	0	15	12	0	0	15	14	0	0	8	19
chr3	27482888	A	G	999	11 11 11 11 11 11 11 11	32	0	0	19	20	0	0	22	12	0	0	13	23	0	0	20	24	0	0	19	18	0	0	19	13	0	0	16	18	0	0	15	22
chr3	27965782	T	C	999	11 11 11 11 11 11 11 11	45	0	0	27	22	0	0	24	36	0	0	24	30	0	0	32	36	0	0	35	30	0	0	16	30	0	0	20	31	0	0	13	32
chr3	28161116	T	C	999	11 11 11 11 11 11 11 11	37	0	0	35	25	0	0	32	26	0	0	35	17	0	0	22	28	0	0	42	40	0	0	38	31	0	0	33	26	0	0	21	16	merge_repeat		chromOut		nested
chr3	29822410	A	G	999	11 11 11 11 11 11 11 11	41	0	0	27	21	0	0	27	28	0	0	27	19	0	0	38	29	0	0	22	37	0	0	21	20	0	0	29	38	0	0	31	24
chr3	30584431	T	A	999	11 11 11 11 11 11 11 11	26	0	0	14	15	0	0	19	19	0	0	19	7	0	0	16	19	0	0	17	21	0	0	25	22	0	0	17	16	0	0	15	21	merge_repeat	trfMask	chromOut	simple	nested
chr3	30593440	A	C	999	11 11 11 11 11 11 11 11	35	0	0	25	23	0	0	15	22	0	0	15	25	0	0	20	23	0	0	19	34	0	0	18	27	0	0	14	21	0	0	17	21	merge_repeat		chromOut
chr3	30594202	A	G	999	11 11 11 11 11 11 11 11	31	0	0	19	15	0	0	20	20	0	0	23	17	0	0	21	20	0	0	20	14	0	0	17	20	0	0	19	22	0	0	19	12
chr3	34599047	T	G	999	11 11 11 11 11 11 11 11	31	0	0	20	21	0	0	20	21	0	0	25	15	0	0	28	18	0	0	32	22	0	0	20	27	0	0	26	20	0	0	18	13	merge_repeat	trfMask	chromOut	simple
chr3	35229097	A	T	999	11 11 11 11 11 11 11 11	45	0	0	20	34	0	0	23	31	0	0	20	43	0	0	20	43	0	0	24	41	0	0	21	38	0	0	19	26	0	0	23	38
chr3	36031229	C	A	999	11 11 11 11 11 11 11 11	26	0	0	30	9	0	0	28	7	0	0	29	10	0	0	22	7	0	0	20	6	0	0	26	5	0	0	26	9	0	0	21	7	merge_repeat		chromOut		nested
chr3	36191099	G	A	999	11 11 11 11 11 11 11 11	49	0	0	35	39	0	0	32	30	0	0	24	31	0	0	42	39	0	0	36	34	0	0	24	25	0	0	34	27	0	0	25	30	merge_repeat		chromOut		nested
chr3	36347315	G	T	999	11 11 11 11 11 11 11 11	39	0	0	19	26	0	0	17	35	0	0	14	25	0	0	20	33	0	0	22	29	0	0	19	29	0	0	22	45	0	0	20	27
chr3	37366429	C	A	999	11 11 11 11 11 11 11 11	51	0	0	28	23	0	0	24	32	0	0	26	34	0	0	48	31	0	0	29	27	0	0	24	37	0	0	41	30	0	0	30	23	merge_repeat		chromOut
chr3	38024458	A	C	999	11 11 11 11 11 11 11 11	34	0	0	23	18	0	0	24	15	0	0	19	15	0	0	28	16	0	0	32	14	0	0	21	16	0	0	31	7	0	0	17	19	merge_repeat		chromOut
chr3	38024459	A	C	999	11 11 11 11 11 11 11 11	35	0	0	24	18	0	0	24	15	0	0	20	15	0	0	28	16	0	0	32	14	0	0	21	16	0	0	32	7	0	0	17	19	merge_repeat		chromOut
chr3	38730709	G	C	999	11 11 11 11 11 11 11 11	47	0	0	40	22	0	0	27	23	0	0	29	18	0	0	35	25	0	0	30	31	0	0	33	29	0	0	35	16	0	0	37	22	merge_repeat		chromOut
chr3	40672009	C	A	999	11 11 11 11 11 11 11 11	39	0	0	32	23	0	0	31	25	0	0	27	24	0	0	22	17	0	0	22	19	0	0	25	26	0	0	29	18	0	0	30	24
chr3	40672540	C	A	999	11 11 11 11 11 11 11 11	39	0	0	25	22	0	0	20	29	0	0	23	20	0	0	21	25	0	0	24	28	0	0	20	25	0	0	23	23	0	0	15	24
chr3	40681611	G	A	999	11 11 11 11 11 11 11 11	57	0	0	34	23	0	0	34	31	0	0	40	34	0	0	38	42	0	0	31	31	0	0	35	40	0	0	50	28	0	0	40	35
chr3	40787138	C	A	999	11 11 11 11 11 11 11 11	48	0	0	29	50	0	0	26	48	0	0	27	32	0	0	31	37	0	0	36	30	0	0	23	38	0	0	25	23	0	0	30	36
chr3	41159763	C	A	999	11 11 11 11 11 11 11 11	28	0	0	30	7	0	0	30	6	0	0	19	9	0	0	23	9	0	0	20	11	0	0	22	9	0	0	21	8	0	0	19	9
chr3	41313315	A	C	999	11 11 11 11 11 11 11 11	50	0	0	9	41	0	0	25	41	0	0	24	49	0	0	24	40	0	0	36	44	0	0	18	45	0	0	19	44	0	0	29	41	merge_repeat				nested
chr3	41365542	C	G	999	11 11 11 11 11 11 11 11	49	0	0	24	25	0	0	36	24	0	0	31	29	0	0	49	24	0	0	45	20	0	0	32	20	0	0	31	21	0	0	36	32
chr3	42139868	C	T	999	11 11 11 11 11 11 11 11	55	0	0	24	41	0	0	40	38	0	0	30	31	0	0	29	28	0	0	29	34	0	0	35	38	0	0	21	34	0	0	37	43
chr3	42139884	C	A	999	11 11 11 11 11 11 11 11	53	0	0	24	45	0	0	37	39	0	0	29	36	0	0	28	27	0	0	28	31	0	0	32	40	0	0	23	30	0	0	39	42
chr3	42141388	G	A	999	11 11 11 11 11 11 11 11	29	0	0	29	19	0	0	28	12	0	0	29	17	0	0	39	15	0	0	25	22	0	0	27	14	0	0	30	12	0	0	19	10
chr3	42179054	A	T	999	11 11 11 11 11 11 11 11	43	0	0	22	31	0	0	36	15	0	0	24	25	0	0	22	31	0	0	23	21	0	0	24	19	0	0	38	27	0	0	22	23	merge_repeat		chromOut		nested
chr3	44976908	T	G	999	11 11 11 11 11 11 11 11	43	0	0	24	36	0	0	14	29	0	0	21	28	0	0	25	40	0	0	27	29	0	0	21	27	0	0	22	28	0	0	27	20	merge_repeat		chromOut		nested
chr3	45258901	A	T	999	11 11 11 11 11 11 11 11	31	0	0	16	18	0	0	19	25	0	0	12	21	0	0	22	23	1	0	15	22	0	0	18	13	0	0	16	17	0	0	19	16	merge_repeat		chromOut		nested
chr3	45548292	G	A	999	11 11 11 11 11 11 11 11	27	0	0	19	25	0	0	19	15	0	0	22	21	0	0	21	17	0	0	16	17	0	0	11	16	0	0	18	19	0	0	25	19	merge_repeat	trfMask	chromOut	simple
chr3	48671154	T	C	999	11 11 11 11 11 11 11 11	37	0	0	27	21	0	0	20	17	0	0	24	26	0	0	26	33	0	0	30	29	0	0	23	21	0	0	34	19	0	0	23	20	merge_repeat		chromOut
chr3	49297172	T	C	999	11 11 11 11 11 11 11 11	38	0	0	23	35	0	0	18	36	0	0	26	35	0	0	20	24	0	0	21	27	0	0	21	17	0	0	21	25	0	0	27	27
chr3	50461067	G	A	999	11 11 11 11 11 11 11 11	39	0	0	25	21	0	0	35	17	0	0	26	19	0	0	25	28	0	0	34	26	0	0	24	15	0	0	31	19	0	0	28	18	merge_repeat		chromOut		nested
chr3	52213818	A	G	999	11 11 11 11 11 11 11 11	25	0	0	19	6	0	0	23	16	0	0	22	13	0	0	24	14	0	0	26	15	0	0	21	12	0	0	21	10	0	0	17	13
chr3	54224519	A	T	999	11 11 11 11 11 11 11 11	23	0	0	3	21	0	0	6	18	0	0	5	18	0	0	3	23	0	0	8	21	0	0	5	20	0	0	8	19	0	0	6	18
chr3	54573999	C	T	999	11 11 11 11 11 11 11 11	37	0	0	26	20	0	0	23	17	0	0	22	21	0	0	31	25	0	0	32	28	0	0	35	13	0	0	28	22	0	0	21	16	merge_repeat	trfMask	chromOut	simple
chr3	54815461	A	G	999	11 11 11 11 11 11 11 11	60	0	0	31	34	0	0	35	35	0	0	27	44	0	0	41	29	0	0	30	34	0	1	32	30	0	0	32	28	0	0	34	27	merge_repeat		chromOut
chr3	54914906	A	G	999	11 11 11 11 11 11 11 11	44	0	0	30	14	0	0	23	25	0	0	40	26	0	0	28	25	0	0	28	27	0	0	28	23	0	0	31	20	0	0	24	26
chr3	55764730	A	G	999	11 11 11 11 11 11 11 11	53	0	0	37	34	0	0	32	25	0	0	29	27	0	0	35	40	0	0	32	27	0	0	30	31	0	0	18	35	0	0	32	22
chr3	58264279	C	G	999	11 11 11 11 11 11 11 11	36	0	0	18	22	0	0	18	18	0	0	24	15	0	0	18	23	0	0	16	29	0	0	21	25	0	0	26	24	0	0	25	19	merge_repeat		chromOut
chr3	58869288	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	1	10	12	0	0	14	19	0	0	12	10	0	0	11	17	0	1	17	8	0	0	12	15
chr3	58869290	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	17	0	0	17	8	0	0	12	15
chr3	58869292	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	17	0	0	17	8	0	0	12	15
chr3	58869294	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	17	0	0	17	8	0	0	12	15
chr3	58869296	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	16	0	0	17	8	0	0	12	15
chr3	58869298	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	17	0	0	17	8	0	0	12	15
chr3	58869300	G	C	999	11 11 11 11 11 11 11 11	20	0	0	11	9	0	0	10	11	0	0	10	12	0	0	14	19	0	0	12	10	0	0	11	18	0	0	17	8	0	0	12	15
chr3	59610844	T	C	999	11 11 11 11 11 11 11 11	55	0	0	29	37	0	0	33	30	1	0	38	35	0	0	33	26	1	2	25	44	1	0	22	32	0	0	25	34	1	0	40	38	merge_repeat		chromOut		nested
chr3	59612331	T	A	999	11 11 11 11 11 11 11 11	43	0	0	33	22	0	0	32	27	0	0	36	25	0	0	25	30	0	0	37	26	0	0	22	21	0	0	48	24	1	0	26	19	merge_repeat		chromOut		nested
chr3	61903569	G	T	999	11 11 11 11 11 11 11 11	49	0	0	31	25	0	0	37	21	0	0	30	20	0	0	34	34	0	0	34	25	0	0	32	17	0	0	22	27	0	0	39	29	merge_repeat		chromOut
chr3	62098337	C	T	999	11 11 11 11 11 11 11 11	41	0	0	24	21	0	0	20	24	0	0	37	30	0	0	40	34	0	0	36	24	0	0	32	29	0	0	28	21	0	0	23	18
chr3	62733710	G	T	999	11 11 11 11 11 11 11 11	36	0	0	33	29	0	0	23	20	0	0	26	24	0	0	29	23	0	0	22	24	0	0	29	22	0	0	22	14	0	0	32	23
chr3	63248770	T	C	999	11 11 11 11 11 11 11 11	53	0	0	39	19	0	0	43	23	0	0	25	29	0	0	34	36	0	0	28	27	0	0	28	29	0	0	34	19	0	0	43	30	merge_repeat		chromOut		nested
chr3	64069615	C	T	999	11 11 11 11 11 11 11 11	51	0	0	19	39	0	0	25	40	0	0	39	33	0	0	23	28	0	0	34	30	0	0	37	36	0	0	27	33	0	0	41	25	merge_repeat		chromOut		nested
chr3	64292324	A	C	999	11 11 11 11 11 11 11 11	48	0	0	30	37	0	0	27	33	0	0	30	31	0	0	27	33	0	0	31	33	0	0	24	24	0	0	40	29	0	0	27	28	merge_repeat		chromOut
chr3	65573508	A	T	999	11 11 11 11 11 11 11 11	20	0	0	7	13	0	0	7	17	0	0	6	14	0	0	14	14	0	0	3	25	0	0	4	17	0	0	1	20	0	0	7	17	merge_repeat		chromOut	simple
chr3	66154431	T	G	999	11 11 11 11 11 11 11 11	32	0	0	19	29	0	0	22	27	0	0	17	21	0	0	21	23	0	0	20	26	0	0	14	18	0	0	15	24	0	0	17	20	merge_repeat		chromOut
chr3	66154433	G	T	999	11 11 11 11 11 11 11 11	32	0	0	17	28	0	0	22	27	0	0	16	21	0	0	21	23	0	0	18	26	0	0	14	18	0	0	15	24	0	0	17	21	merge_repeat		chromOut
chr3	66799970	G	T	999	11 11 11 11 11 11 11 11	37	0	0	23	18	0	0	29	29	0	0	21	24	0	0	24	20	0	0	20	36	0	0	19	18	0	0	18	21	0	0	28	24	merge_repeat		chromOut		nested
chr3	67483256	T	C	999	11 11 11 11 11 11 11 11	53	0	0	26	31	0	0	32	24	0	0	33	22	0	0	40	35	0	0	31	28	0	0	44	32	0	0	30	29	0	0	25	28
chr3	67845813	T	A	999	11 11 11 11 11 11 11 11	33	0	0	13	31	0	0	27	29	0	0	14	24	0	0	20	29	0	0	12	23	0	0	15	28	0	0	18	33	0	0	17	16	merge_repeat		chromOut
chr3	69205919	A	C	999	11 11 11 11 11 11 11 11	39	0	0	28	29	0	0	29	21	0	0	25	30	0	0	24	15	0	0	34	37	0	0	32	27	0	0	35	19	0	0	22	22
chr3	71296597	G	C	999	11 11 11 11 11 11 11 11	50	0	0	36	22	0	0	32	21	0	0	28	36	0	0	32	38	0	0	26	32	0	0	26	24	0	0	35	31	0	0	35	37	merge_repeat		chromOut		nested
chr3	71313781	A	G	999	11 11 11 11 11 11 11 11	43	0	0	19	31	0	0	29	31	0	0	18	31	0	0	33	32	0	0	28	25	0	0	20	23	0	0	35	31	0	0	29	28	merge_repeat		chromOut		nested
chr3	72445789	A	C	999	11 11 11 11 11 11 11 11	23	0	1	4	18	0	0	7	19	0	0	6	17	0	0	10	19	0	0	16	27	0	1	16	18	0	0	9	23	0	0	13	24	merge_repeat	trfMask	chromOut	simple
chr3	74177912	A	C	999	11 11 11 11 11 11 11 11	55	0	0	21	34	0	0	23	34	0	0	30	26	0	0	21	37	0	0	25	36	0	0	27	36	0	0	19	42	0	0	27	35
chr3	76280569	G	C	999	11 11 11 11 11 11 11 11	54	0	0	38	24	0	0	40	24	0	0	35	19	0	0	33	32	0	0	29	34	0	0	36	33	0	0	29	34	0	0	43	26
chr3	76614294	G	A	999	11 11 11 11 11 11 11 11	63	0	0	27	36	0	0	31	51	0	0	26	39	0	0	26	50	0	0	34	43	0	0	33	30	0	0	30	33	0	0	22	51	merge_repeat				nested
chr3	84626662	A	C	999	11 11 11 11 11 11 11 11	25	0	0	18	21	0	0	12	16	0	0	15	10	0	0	22	20	0	0	24	30	0	0	25	22	0	0	16	28	0	0	23	15	merge_repeat	trfMask	chromOut	simple
chr3	84627487	G	A	999	11 11 11 11 11 11 11 11	38	0	0	38	17	0	0	26	12	0	0	32	29	0	0	28	23	0	0	31	21	0	0	23	18	0	0	25	13	0	0	26	14	merge_repeat		chromOut
chr3	86394356	G	A	999	11 11 11 11 11 11 11 11	61	0	0	41	46	0	0	36	37	0	0	43	41	0	0	42	36	0	0	29	32	0	0	31	34	0	0	42	42	0	0	42	45
chr3	87245508	C	A	999	11 11 11 11 11 11 11 11	25	0	0	26	7	0	0	14	14	0	0	20	7	0	0	28	10	0	0	18	7	0	0	22	12	0	0	20	6	0	0	23	6
chr3	87902598	T	C	999	11 11 11 11 11 11 11 11	23	0	0	24	4	0	0	20	6	1	0	19	3	0	0	26	6	0	0	22	4	0	0	22	2	0	0	21	6	1	0	19	4	merge_repeat		chromOut		nested
chr3	87952013	A	C	999	11 11 11 11 11 11 11 11	22	0	0	10	13	0	0	18	20	0	0	15	18	0	0	14	19	1	0	13	15	1	0	21	19	0	0	9	13	0	0	20	17	merge_repeat		chromOut
chr3	88362841	C	A	999	11 11 11 11 11 11 11 11	51	0	0	34	32	0	0	33	19	0	0	35	26	0	0	37	22	0	0	26	25	0	0	31	31	0	0	38	29	0	0	44	26
chr3	88512566	T	C	999	11 11 11 11 11 11 11 11	36	0	0	22	14	0	0	22	27	0	0	25	21	0	0	18	26	0	0	20	30	0	0	21	20	0	0	29	28	0	0	22	24
chr3	88967081	T	C	999	11 11 11 11 11 11 11 11	44	0	0	29	34	0	0	40	28	0	0	31	23	0	0	34	34	0	0	32	45	0	0	26	26	0	0	31	32	0	0	21	23	merge_repeat		chromOut
chr3	89918690	C	A	999	11 11 11 11 11 11 11 11	28	0	0	18	17	0	0	23	23	0	0	21	21	0	1	27	21	0	0	25	25	0	1	16	21	1	0	15	12	0	0	18	15
chr3	90783315	G	A	999	11 11 11 11 11 11 11 11	35	0	0	25	32	0	0	21	33	0	0	25	24	0	0	29	29	0	0	21	31	0	0	21	30	0	0	31	34	0	0	19	16	merge_repeat		chromOut		nested	segmentDup
chr3	94701606	T	C	999	11 11 11 11 11 11 11 11	24	0	0	15	22	0	0	13	20	0	0	12	13	0	0	20	18	0	0	16	13	0	0	13	15	0	0	15	9	0	0	18	18	merge_repeat		chromOut		nested	segmentDup
chr3	94895707	A	C	999	11 11 11 11 11 11 11 11	26	0	0	20	9	0	0	18	20	0	0	19	19	0	0	22	17	0	0	20	24	0	0	11	15	0	0	22	11	0	0	18	9
chr3	94895710	A	G	999	11 11 11 11 11 11 11 11	22	0	0	15	7	0	0	16	19	0	0	17	17	0	0	20	17	0	0	17	24	0	0	10	15	0	0	19	11	0	0	16	9
chr3	94895713	A	G	999	11 11 11 11 11 11 11 11	22	0	0	15	7	0	0	16	19	0	0	17	17	0	0	20	17	0	0	17	24	0	0	10	15	0	0	19	11	0	0	16	9
chr3	94895714	A	C	999	11 11 11 11 11 11 11 11	22	0	0	15	7	0	0	16	19	0	0	17	17	0	0	20	17	0	0	17	24	0	0	10	15	0	0	19	11	0	0	16	9
chr3	94895722	T	G	999	11 11 11 11 11 11 11 11	20	0	0	13	7	0	0	14	19	0	0	15	17	0	0	18	17	0	0	14	24	0	0	6	15	0	0	19	11	0	0	13	9
chr3	94895772	C	A	999	11 11 11 11 11 11 11 11	43	0	0	27	21	0	0	22	36	0	0	25	30	0	0	33	34	0	0	27	44	0	0	15	28	0	0	20	34	0	0	26	27
chr3	95345876	C	A	999	11 11 11 11 11 11 11 11	22	0	0	17	8	0	0	16	19	0	0	15	13	0	0	17	24	0	0	18	21	0	0	11	16	0	0	17	21	0	0	13	9	merge_repeat		chromOut	simple
chr3	95533935	C	G	999	11 11 11 11 11 11 11 11	49	0	0	32	27	0	0	32	29	0	0	29	20	0	0	27	42	0	0	32	28	0	0	34	25	0	0	30	26	0	0	25	25	merge_repeat		chromOut		nested
chr3	95533964	G	T	999	11 11 11 11 11 11 11 11	46	0	0	33	34	0	0	30	36	0	0	25	21	0	0	24	40	0	0	28	34	0	0	32	27	0	0	24	32	0	0	26	32	merge_repeat		chromOut		nested
chr3	95533974	A	G	999	11 11 11 11 11 11 11 11	44	0	0	30	35	0	0	33	39	0	0	24	20	0	0	25	40	0	0	25	36	0	0	33	28	0	0	23	33	0	0	28	32	merge_repeat		chromOut		nested
chr3	95534016	A	G	999	11 11 11 11 11 11 11 11	49	0	0	36	43	0	0	28	46	0	0	28	21	0	0	23	38	0	0	23	36	0	0	37	22	0	0	29	34	0	0	29	33	merge_repeat		chromOut		nested
chr3	95534034	G	T	999	11 11 11 11 11 11 11 11	54	0	0	30	46	0	0	29	45	0	0	31	23	0	0	21	38	0	0	27	32	0	0	35	23	0	0	26	36	0	0	24	33	merge_repeat		chromOut		nested
chr3	95674932	C	G	999	11 11 11 11 11 11 11 11	40	0	0	19	29	0	0	24	25	0	0	29	18	0	0	30	26	0	0	24	19	0	0	32	25	0	0	20	20	0	0	24	20	merge_repeat		chromOut
chr3	95674943	T	G	999	11 11 11 11 11 11 11 11	43	0	0	22	28	0	0	20	25	0	0	25	22	0	0	33	26	0	0	26	20	0	0	32	21	0	0	23	21	0	0	23	20	merge_repeat		chromOut
chr3	95678859	C	G	999	11 11 11 11 11 11 11 11	47	0	0	32	15	0	0	21	29	0	0	36	20	0	0	32	34	0	0	42	32	0	0	33	20	0	0	33	25	0	0	23	25
chr3	95708919	C	A	999	11 11 11 11 11 11 11 11	42	0	0	20	22	0	0	22	23	0	0	24	24	0	0	19	31	0	0	32	24	0	0	18	36	0	0	24	21	0	0	15	29	merge_repeat		chromOut
chr3	95708944	C	A	999	11 11 11 11 11 11 11 11	36	0	0	23	19	0	0	20	19	0	0	27	21	0	0	19	29	0	0	34	22	0	0	20	26	0	0	23	13	0	0	19	25
chr3	95708948	C	A	999	11 11 11 11 11 11 11 11	37	0	0	23	19	0	0	20	19	0	0	26	21	0	0	19	29	0	0	34	22	0	0	20	26	0	0	23	14	0	0	19	25
chr3	95708953	C	A	999	11 11 11 11 11 11 11 11	37	0	0	25	20	0	0	23	19	0	0	27	24	0	0	20	30	0	0	34	23	0	0	21	27	0	0	23	14	0	0	19	26	merge_repeat		chromOut		nested
chr3	95727241	A	C	999	11 11 11 11 11 11 11 11	27	0	0	13	14	0	0	23	16	0	0	16	17	0	0	20	18	0	0	24	20	0	0	14	16	0	0	21	23	0	0	20	17	merge_repeat	trfMask	chromOut	simple
chr3	95727243	A	T	999	11 11 11 11 11 11 11 11	30	0	0	15	15	0	0	24	16	0	0	15	17	0	0	20	17	0	0	24	21	0	0	15	17	0	0	20	23	0	0	20	19	merge_repeat	trfMask	chromOut	simple
chr3	95737980	C	G	999	11 11 11 11 11 11 11 11	30	0	0	31	7	0	0	25	9	0	0	24	6	0	0	22	15	0	0	27	14	0	0	19	13	0	0	21	16	0	0	29	7
chr3	95737983	G	T	999	11 11 11 11 11 11 11 11	27	0	0	28	7	0	0	25	10	0	0	21	6	0	0	21	15	0	0	27	14	0	0	18	14	0	0	21	16	0	0	27	7
chr3	95746478	C	T	999	11 11 11 11 11 11 11 11	39	0	0	23	16	0	0	33	16	0	0	33	27	0	0	37	18	0	0	34	21	0	0	33	22	0	0	37	23	0	0	37	25	merge_repeat		chromOut
chr3	95746509	G	A	999	11 11 11 11 11 11 11 11	39	0	0	23	18	1	0	30	15	0	0	28	20	0	0	31	16	0	0	26	18	0	0	28	11	0	0	28	19	0	0	33	17
chr3	95746514	A	T	999	11 11 11 11 11 11 11 11	41	0	0	22	19	0	0	32	18	0	0	29	20	0	0	29	16	0	0	28	20	0	0	32	14	0	0	26	20	0	0	32	21
chr3	95746524	G	C	999	11 11 11 11 11 11 11 11	47	0	0	28	22	0	0	31	21	0	0	30	18	0	0	34	17	0	0	30	19	0	0	36	16	0	0	30	17	0	0	33	20
chr3	95777084	A	T	999	11 11 11 11 11 11 11 11	41	0	0	31	12	0	0	34	16	0	0	24	17	0	0	24	21	0	0	28	26	0	0	30	29	0	0	28	20	0	0	26	18	merge_repeat		chromOut
chr3	95797451	T	C	999	11 11 11 11 11 11 11 11	35	0	1	18	26	0	0	12	30	0	0	13	37	0	0	15	37	0	0	24	36	0	0	25	42	0	0	24	29	0	0	11	24
chr3	95797476	C	A	999	11 11 11 11 11 11 11 11	32	0	0	16	25	0	0	12	24	0	0	10	29	0	0	13	30	0	0	26	30	0	0	20	37	0	0	20	20	0	0	14	18
chr3	95821438	C	A	999	11 11 11 11 11 11 11 11	48	0	0	42	31	0	0	45	33	0	0	38	35	0	0	39	24	0	0	53	25	0	0	42	22	0	0	38	23	0	0	30	18
chr3	95822210	C	T	999	11 11 11 11 11 11 11 11	31	0	0	23	24	0	0	21	17	0	0	24	15	0	0	29	15	0	0	19	15	0	0	17	14	0	0	22	23	0	0	24	13
chr3	95822342	G	T	999	11 11 11 11 11 11 11 11	34	0	0	14	26	0	0	12	24	0	0	18	32	0	0	16	19	0	0	19	33	0	0	13	33	0	0	15	19	0	0	13	28	merge_repeat		chromOut
chr3	95826691	A	G	999	11 11 11 11 11 11 11 11	35	0	0	29	6	0	0	33	2	0	0	36	16	0	0	43	20	0	0	29	17	0	0	34	8	0	0	36	10	0	0	31	5	merge_repeat		chromOut
chr3	95831458	G	T	999	11 11 11 11 11 11 11 11	33	0	0	21	27	0	0	17	22	0	0	21	30	0	1	23	23	0	0	24	27	0	0	16	17	1	0	27	31	0	0	20	31	merge_repeat		chromOut
chr3	95831461	G	T	999	11 11 11 11 11 11 11 11	34	0	0	21	27	0	0	19	23	0	0	25	30	0	0	25	24	0	0	28	27	0	0	17	17	0	0	28	31	0	0	22	32	merge_repeat		chromOut
chr3	95831519	T	C	999	11 11 11 11 11 11 11 11	38	0	0	23	24	0	0	21	17	0	0	24	25	0	0	26	21	0	0	23	17	0	0	22	16	0	0	23	23	0	0	20	25	merge_repeat		chromOut
chr3	95831522	T	C	999	11 11 11 11 11 11 11 11	38	0	0	23	24	0	0	21	18	0	0	25	25	0	0	26	21	0	0	23	17	0	0	22	16	0	0	22	22	0	0	19	25	merge_repeat		chromOut
chr3	95831525	T	C	999	11 11 11 11 11 11 11 11	39	0	0	23	25	0	0	21	19	0	0	25	25	0	0	26	21	0	0	23	18	1	0	22	16	0	1	22	23	0	0	19	25	merge_repeat		chromOut
chr3	95935823	G	A	999	11 11 11 11 11 11 11 11	47	0	0	40	31	0	0	18	31	0	0	23	24	0	0	26	37	0	0	24	30	0	0	26	24	0	0	27	28	0	0	16	31	merge_repeat		chromOut
chr3	96075115	T	C	999	11 11 11 11 11 11 11 11	46	0	0	25	32	0	0	29	49	0	0	25	22	0	0	16	30	0	0	33	32	0	0	22	32	0	0	25	36	0	0	20	33	merge_repeat		chromOut
chr3	96123489	G	T	999	11 11 11 11 11 11 11 11	54	0	0	34	30	0	0	33	31	0	0	36	29	0	0	42	43	0	0	27	34	0	0	28	26	0	0	43	37	0	0	38	31
chr3	96787719	C	T	999	11 11 11 11 11 11 11 11	20	0	0	28	2	0	0	27	5	0	0	18	3	0	0	27	11	0	0	24	8	0	0	22	10	0	0	17	3	0	0	18	9
chr3	97372981	A	G	999	11 11 11 11 11 11 11 11	51	0	0	38	13	0	0	31	23	0	0	34	20	0	0	40	24	0	0	35	31	0	0	31	20	0	0	37	20	0	0	34	20	merge_repeat		chromOut
chr3	97495773	T	G	999	11 11 11 11 11 11 11 11	42	0	0	38	21	0	0	32	18	0	0	31	21	0	0	23	21	0	0	34	17	0	0	35	23	0	0	35	16	0	0	23	19	merge_repeat		chromOut		nested
chr3	97532017	G	T	999	11 11 11 11 11 11 11 11	38	0	0	20	23	0	0	19	27	0	0	24	14	0	0	33	27	0	0	21	32	0	0	23	24	0	0	30	24	0	0	27	23
chr3	98393243	T	A	999	11 11 11 11 11 11 11 11	31	0	0	17	25	0	0	22	21	0	0	10	31	0	0	19	16	0	0	25	25	0	0	16	15	0	0	16	15	0	0	16	20	merge_repeat	trfMask	chromOut	simple
chr3	100581546	T	C	999	11 11 11 11 11 11 11 11	57	0	0	27	34	0	0	23	34	0	0	32	30	0	0	39	44	0	0	35	35	0	0	38	29	0	0	35	38	0	0	36	26
chr3	102030399	C	A	999	11 11 11 11 11 11 11 11	44	0	0	33	16	0	0	21	23	0	0	38	22	0	0	37	20	0	0	32	24	0	0	31	18	1	1	30	22	0	0	37	25	merge_repeat	trfMask	chromOut	simple
chr3	102030423	C	A	999	11 11 11 11 11 11 11 11	32	1	0	34	15	0	1	15	16	0	0	40	15	0	0	34	19	1	0	40	22	1	0	32	11	0	0	27	16	2	0	34	23	merge_repeat	trfMask	chromOut	simple
chr3	102030539	G	A	999	11 11 11 11 11 11 11 11	36	0	0	25	12	0	0	33	12	0	0	37	14	0	1	36	14	0	0	36	17	0	0	34	14	0	0	27	9	0	0	38	14	merge_repeat	trfMask	chromOut	simple
chr3	102030854	T	C	999	11 11 11 11 11 11 11 11	61	0	0	37	38	0	0	43	34	0	0	29	38	0	0	48	43	0	0	45	39	0	0	24	37	0	0	35	39	0	0	36	35	merge_repeat		chromOut
chr3	105924913	A	G	999	11 11 11 11 11 11 11 11	44	0	0	32	30	0	0	38	26	0	0	24	20	0	0	38	30	0	0	38	21	0	0	27	20	0	0	33	25	0	0	27	25	merge_repeat		chromOut
chr3	107581375	A	C	999	11 11 11 11 11 11 11 11	35	0	0	25	19	0	0	22	18	0	0	17	19	0	0	21	15	0	0	39	20	0	0	24	21	0	0	14	21	0	0	18	17
chr3	110323265	A	T	999	11 11 11 11 11 11 11 11	36	1	0	23	17	0	0	28	31	0	0	17	24	0	0	18	26	1	0	18	26	1	0	16	23	0	1	21	14	0	0	18	19	merge_repeat		chromOut
chr3	115292408	A	G	999	11 11 11 11 11 11 11 11	31	0	0	34	18	0	0	23	19	0	0	27	22	0	0	32	24	0	0	29	27	0	0	15	16	0	0	16	17	0	0	29	18	merge_repeat	trfMask	chromOut	simple
chr3	116159872	G	T	999	11 11 11 11 11 11 11 11	28	0	0	13	23	0	0	12	16	0	0	12	24	0	0	15	25	0	0	20	33	0	0	18	30	0	0	10	22	0	0	11	27	merge_repeat	trfMask	chromOut	simple	nested
chr3	116159912	A	G	999	11 11 11 11 11 11 11 11	29	0	0	11	25	0	0	13	18	0	0	10	22	0	0	13	28	0	0	30	26	0	0	14	26	0	0	8	21	0	0	18	22	merge_repeat	trfMask	chromOut	simple	nested
chr3	116159923	A	G	999	11 11 11 11 11 11 11 11	26	0	0	12	18	0	0	13	17	0	0	10	16	0	0	13	25	0	0	33	22	0	0	14	22	0	0	9	18	0	0	14	20	merge_repeat	trfMask	chromOut	simple	nested
chr3	116159925	G	T	999	11 11 11 11 11 11 11 11	25	0	0	12	18	0	0	12	17	0	0	9	16	0	0	12	25	0	0	31	22	0	0	14	23	0	0	9	18	0	0	14	20	merge_repeat	trfMask	chromOut	simple	nested
chr3	116159952	A	G	999	11 11 11 11 11 11 11 11	23	0	0	11	22	0	0	10	16	0	0	8	15	0	0	16	27	0	0	25	16	0	0	11	23	0	0	12	25	0	0	14	25	merge_repeat	trfMask	chromOut	simple	nested
chr3	116159965	G	T	999	11 11 11 11 11 11 11 11	21	0	0	10	20	0	0	8	15	0	0	7	14	0	0	17	28	0	0	23	17	0	0	10	20	0	0	14	21	0	0	15	23	merge_repeat	trfMask	chromOut	simple	nested
chr3	116198255	T	C	999	11 11 11 11 11 11 11 11	31	0	0	10	21	0	0	9	36	0	0	10	26	0	0	23	32	0	0	19	45	0	0	10	32	0	0	10	25	0	0	14	31	merge_repeat		chromOut		nested
chr3	116267342	G	A	999	11 11 11 11 11 11 11 11	36	0	0	10	26	0	0	20	28	0	0	12	37	1	0	28	32	0	0	20	33	0	0	24	38	0	0	16	35	0	0	23	49	merge_repeat	trfMask	chromOut	simple	nested
chr3	117160971	T	C	999	11 11 11 11 11 11 11 11	42	0	0	20	27	0	0	17	29	0	0	24	20	0	0	21	25	0	0	26	36	0	0	20	23	0	0	20	29	0	0	20	22	merge_repeat		chromOut
chr3	117270415	T	A	999	11 11 11 11 11 11 11 11	29	0	0	22	15	0	0	20	16	0	0	23	22	0	0	20	10	0	0	22	14	0	0	17	17	0	0	18	11	0	0	20	11	merge_repeat		chromOut		nested
chr3	117270428	G	A	999	11 11 11 11 11 11 11 11	33	0	0	22	16	0	0	25	17	0	0	30	24	0	0	24	13	0	0	32	15	0	0	20	18	0	0	23	10	0	0	23	15	merge_repeat		chromOut		nested
chr3	117270434	G	A	999	11 11 11 11 11 11 11 11	35	0	0	24	17	0	0	26	18	0	0	30	22	0	0	25	16	0	0	34	15	0	0	21	18	0	0	25	10	0	0	26	15	merge_repeat				nested
chr3	118263634	A	C	999	11 11 11 11 11 11 11 11	64	0	0	45	36	0	0	45	28	0	0	28	36	0	0	39	30	0	0	33	45	0	0	34	32	0	0	38	37	0	0	36	33
chr3	119108318	A	G	999	11 11 11 11 11 11 11 11	54	0	0	34	30	0	0	35	30	0	0	33	23	0	0	37	23	0	0	42	27	0	0	31	26	0	0	27	28	0	0	32	22
chr3	122625068	C	A	999	11 11 11 11 11 11 11 11	38	0	0	35	26	0	0	33	33	0	0	29	22	0	0	40	15	0	0	35	28	0	0	35	26	0	0	33	27	0	0	19	19
chr3	122625239	C	A	999	11 11 11 11 11 11 11 11	25	0	0	32	4	0	0	20	7	0	0	26	8	0	0	16	9	0	0	19	14	0	0	28	9	0	0	24	9	0	0	23	6	merge_repeat		chromOut
chr3	123170629	A	C	999	11 11 11 11 11 11 11 11	58	0	0	36	29	0	0	37	30	0	0	33	34	0	0	52	25	0	0	40	28	0	0	43	16	0	0	35	26	0	0	32	26	merge_repeat	trfMask	chromOut	simple
chr3	123170630	C	A	999	11 11 11 11 11 11 11 11	58	0	0	36	29	0	0	37	30	0	0	33	34	0	0	52	25	0	0	40	28	0	0	43	15	0	0	35	26	0	0	32	26	merge_repeat	trfMask	chromOut	simple
chr3	124795721	A	C	999	11 11 11 11 11 11 11 11	53	0	0	42	36	0	0	39	25	0	0	35	19	0	0	39	26	0	0	43	25	0	0	28	25	0	0	39	36	0	0	39	30
chr3	125343649	G	T	999	11 11 11 11 11 11 11 11	25	0	0	6	19	0	0	10	18	0	0	10	17	0	0	14	19	0	0	8	20	0	0	12	27	0	0	13	24	0	0	6	21	merge_repeat		chromOut
chr3	126221500	C	A	999	11 11 11 11 11 11 11 11	56	0	0	38	36	0	0	32	24	0	0	35	23	0	0	28	29	0	0	34	24	0	0	30	30	0	0	32	40	0	0	43	25	merge_repeat		chromOut		nested
chr3	128347786	A	G	999	11 11 11 11 11 11 11 11	50	0	0	42	34	0	0	35	37	0	0	25	25	0	0	34	45	0	0	28	35	0	0	33	35	0	0	38	38	0	0	23	38
chr3	131371863	G	C	999	11 11 11 11 11 11 11 11	53	0	0	37	40	0	0	23	31	0	0	21	34	0	0	33	30	0	0	33	20	0	0	27	35	0	0	31	29	0	0	29	45
chr3	131372185	T	C	999	11 11 11 11 11 11 11 11	33	0	0	19	24	0	0	20	15	0	0	19	14	0	0	26	24	0	0	25	19	0	0	26	19	0	0	28	20	0	0	16	17
chr3	131372188	G	A	999	11 11 11 11 11 11 11 11	32	0	0	19	24	0	0	20	15	0	0	19	14	0	0	25	24	0	0	23	19	0	0	24	19	0	0	23	19	0	0	15	17
chr3	131372190	G	T	999	11 11 11 11 11 11 11 11	32	0	0	19	24	0	0	20	15	0	0	19	14	0	0	25	24	0	0	23	19	0	0	24	19	0	0	23	19	0	0	15	17
chr3	131372192	A	G	999	11 11 11 11 11 11 11 11	32	0	0	19	24	0	0	20	15	0	0	19	14	0	0	25	24	0	0	23	19	0	0	24	19	0	0	23	19	0	0	15	17
chr3	132284358	C	T	999	11 11 11 11 11 11 11 11	46	0	0	39	21	0	0	44	18	0	0	28	18	0	0	45	28	0	0	45	23	0	0	41	28	0	0	46	18	0	0	28	22
chr3	133137206	A	G	999	11 11 11 11 11 11 11 11	40	0	0	26	31	0	0	27	33	0	0	27	27	0	0	40	27	0	0	36	26	0	0	33	21	0	0	40	25	0	0	20	20
chr3	133569687	G	A	999	11 11 11 11 11 11 11 11	48	0	0	36	27	0	0	23	30	0	0	36	30	0	0	29	27	0	0	19	35	0	0	33	23	0	0	40	20	0	0	21	27	merge_repeat		chromOut
chr3	134970473	A	C	999	11 11 11 11 11 11 11 11	58	0	0	25	35	0	0	35	33	0	0	47	32	0	0	54	34	0	0	39	35	0	0	37	40	0	0	33	39	0	0	27	31
chr3	135299625	T	C	999	11 11 11 11 11 11 11 11	27	0	0	37	1	0	0	32	1	0	0	26	5	0	0	33	6	0	0	30	4	0	0	36	5	0	0	28	3	0	0	25	2
chr3	136426805	G	C	999	11 11 11 11 11 11 11 11	23	0	0	18	5	0	0	18	14	0	0	30	9	0	0	26	8	0	0	21	12	0	0	33	13	0	0	18	8	0	0	19	13
chr3	138315342	G	T	999	11 11 11 11 11 11 11 11	48	0	0	29	46	0	0	26	27	0	0	27	39	0	0	17	31	0	0	25	31	0	0	36	31	0	0	33	40	0	0	27	39	merge_repeat		chromOut
chr3	138320311	C	T	999	11 11 11 11 11 11 11 11	42	0	0	31	21	0	0	24	22	0	0	30	20	0	0	41	21	0	0	22	33	0	0	22	20	0	0	26	19	0	0	22	25	merge_repeat		chromOut
chr3	138320341	G	A	999	11 11 11 11 11 11 11 11	39	0	0	32	22	0	0	21	18	1	0	24	21	0	0	36	23	2	0	22	35	0	0	24	23	0	0	22	23	1	0	21	31	merge_repeat		chromOut
chr3	138320485	C	A	999	11 11 11 11 11 11 11 11	30	0	0	26	21	0	0	13	21	0	0	19	19	0	0	13	24	0	0	16	14	0	0	21	21	0	0	19	16	0	0	16	16	merge_repeat		chromOut
chr3	138323265	C	A	999	11 11 11 11 11 11 11 11	60	0	0	30	34	0	0	32	40	0	0	28	45	0	0	27	41	0	0	29	35	0	0	36	34	0	0	31	29	0	0	33	35
chr3	138323287	C	A	999	11 11 11 11 11 11 11 11	63	0	0	31	33	0	0	32	44	0	0	30	47	0	0	27	44	0	0	30	35	0	0	30	33	0	0	38	25	0	0	32	37
chr3	138418436	A	G	999	11 11 11 11 11 11 11 11	23	0	0	9	21	0	0	8	20	0	0	11	12	0	0	11	23	0	0	18	15	0	0	11	17	0	0	13	14	0	0	16	11
chr3	138425817	G	T	999	11 11 11 11 11 11 11 11	47	0	0	35	25	0	0	31	28	0	0	38	29	0	0	26	31	0	0	23	28	0	0	30	25	0	0	29	31	0	0	23	24
chr3	138489144	A	C	999	11 11 11 11 11 11 11 11	35	0	0	21	22	0	0	18	22	0	0	19	16	0	0	14	36	0	0	15	28	0	0	19	27	0	0	13	32	0	0	17	32
chr3	138926012	C	A	999	11 11 11 11 11 11 11 11	61	0	0	32	38	0	0	30	42	0	0	35	32	0	0	37	40	0	0	35	41	0	0	29	32	0	0	29	47	0	0	46	28
chr3	139062045	A	T	999	11 11 11 11 11 11 11 11	33	0	0	23	10	0	0	29	20	0	0	20	16	0	0	20	15	0	0	29	21	0	0	21	15	0	0	18	16	0	0	28	18	merge_repeat	trfMask	chromOut	simple
chr3	141365432	T	C	999	11 11 11 11 11 11 11 11	54	0	0	40	24	0	0	37	23	0	0	22	32	0	0	42	19	0	0	36	35	0	0	37	31	0	0	38	23	0	0	29	33
chr3	142432468	C	T	999	11 11 11 11 11 11 11 11	31	0	0	6	25	0	0	10	27	0	0	8	34	0	0	18	27	0	0	18	25	0	0	5	27	0	1	14	22	0	0	9	23	merge_repeat		chromOut
chr3	143874533	T	A	999	11 11 11 11 11 11 11 11	27	0	0	21	12	0	0	16	25	0	0	19	21	0	0	20	24	0	0	24	15	0	0	19	17	0	0	19	15	0	0	14	13	merge_repeat		chromOut
chr3	145214214	C	T	999	11 11 11 11 11 11 11 11	29	0	0	19	15	0	0	30	11	0	0	17	19	0	0	27	29	0	0	21	18	0	0	26	18	0	0	16	13	0	0	22	19	merge_repeat		chromOut
chr3	145353346	A	G	999	11 11 11 11 11 11 11 11	58	0	0	28	43	0	0	27	39	0	0	25	38	0	0	34	35	0	0	33	43	0	0	34	39	0	0	44	28	0	0	26	32	merge_repeat		chromOut
chr3	146661093	T	C	999	11 11 11 11 11 11 11 11	52	0	0	48	32	0	0	40	24	0	0	44	24	0	0	46	26	0	0	42	37	0	0	31	21	0	0	37	22	0	0	49	31	merge_repeat		chromOut
chr3	147248325	T	C	999	11 11 11 11 11 11 11 11	57	0	0	33	37	0	0	41	26	0	0	36	21	0	0	29	37	0	0	33	31	0	0	38	38	0	0	26	34	0	0	36	21
chr3	147368724	T	C	999	11 11 11 11 11 11 11 11	54	0	0	28	36	0	0	32	38	0	0	31	32	0	0	35	30	0	0	31	23	0	0	32	33	0	0	31	36	0	0	29	32
chr3	147914562	T	A	999	11 11 11 11 11 11 11 11	38	0	0	23	30	0	0	22	16	0	0	29	22	0	0	23	31	0	0	34	32	0	0	25	32	0	0	31	26	0	0	27	22
chr3	147914596	C	T	999	11 11 11 11 11 11 11 11	47	0	0	25	25	0	0	34	13	0	0	28	21	0	0	34	28	0	0	34	27	0	0	31	24	0	0	42	22	0	0	33	15
chr3	147914771	A	G	999	11 11 11 11 11 11 11 11	53	0	0	40	20	0	0	41	24	0	0	31	28	0	0	27	26	0	0	44	37	0	0	47	27	0	0	39	21	0	0	37	30
chr3	148544412	G	A	999	11 11 11 11 11 11 11 11	47	0	0	31	33	0	0	26	35	0	0	30	34	0	0	31	34	0	0	30	28	0	0	36	36	0	0	29	31	0	0	22	25
chr3	149147207	G	A	999	11 11 11 11 11 11 11 11	36	0	0	20	23	0	0	15	21	0	0	18	22	0	0	15	28	0	0	15	27	0	0	19	28	0	0	21	26	0	0	21	21
chr3	150843526	C	T	999	11 11 11 11 11 11 11 11	46	0	0	31	37	0	0	27	34	0	0	25	21	0	0	25	33	0	0	27	41	0	0	30	28	0	0	23	46	0	0	24	47
chr3	151564508	T	G	999	11 11 11 11 11 11 11 11	27	0	0	16	11	2	1	26	26	1	0	10	17	0	1	19	25	0	1	13	13	1	0	10	16	1	0	16	22	1	0	20	22	merge_repeat	trfMask	chromOut	simple
chr3	157032059	T	C	999	11 11 11 11 11 11 11 11	37	0	0	32	23	0	0	30	31	0	0	28	24	0	0	51	34	0	0	39	18	0	0	36	25	0	0	17	20	0	0	32	26
chr3	158868533	A	G	999	11 11 11 11 11 11 11 11	54	0	0	41	34	0	0	37	35	0	0	36	29	0	0	32	34	0	0	33	34	0	0	30	24	0	0	36	31	0	0	27	32
chr3	159304906	G	T	999	11 11 11 11 11 11 11 11	39	0	0	26	19	0	0	30	14	0	0	31	19	0	0	24	20	0	0	19	20	0	0	29	18	0	0	36	16	0	0	29	11	merge_repeat		chromOut		nested
chr3	159918809	G	T	999	11 11 11 11 11 11 11 11	36	0	0	16	20	0	0	23	33	0	0	25	27	0	0	30	33	0	0	29	19	0	0	24	20	0	0	17	21	0	0	20	19	merge_repeat	trfMask	chromOut	simple
chr3	159925896	C	A	999	11 11 11 11 11 11 11 11	34	0	0	43	29	0	0	35	22	0	0	33	20	0	0	34	31	0	0	35	17	0	0	32	23	0	0	29	13	0	0	24	10