chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr2	7453585	C	T	999	11 11 11 11 11 11 11 11	45	0	1	15	29	0	0	24	30	0	0	27	30	0	0	20	35	0	0	25	27	0	2	27	29	1	0	27	32	0	0	27	33	merge_repeat		chromOut		nested
chr2	7453666	C	T	999	11 11 11 11 11 11 11 11	53	0	0	26	27	0	0	28	26	0	0	33	33	0	0	30	27	0	0	42	28	0	1	26	36	0	2	35	37	0	0	25	30	merge_repeat		chromOut		nested
chr2	7704505	A	C	999	11 11 11 11 11 11 11 11	49	0	0	24	37	0	0	31	40	0	0	25	30	0	0	29	29	0	0	25	32	0	0	22	27	0	0	24	27	0	0	21	32	merge_repeat		chromOut		nested
chr2	7723431	G	A	999	11 11 11 11 11 11 11 11	42	1	0	19	30	1	1	22	36	0	0	20	33	0	1	24	31	0	1	23	24	0	0	17	25	1	1	30	34	0	2	18	31	merge_repeat		chromOut
chr2	11170851	A	G	999	11 11 11 11 11 11 11 11	53	0	0	31	33	0	0	47	37	0	0	35	36	0	0	28	41	0	0	33	33	0	0	28	32	0	0	27	29	0	0	28	25
chr2	14014111	G	T	999	11 11 11 11 11 11 11 11	22	1	0	4	30	0	0	1	22	0	0	3	26	0	0	4	27	0	0	3	19	0	0	1	25	0	0	2	27	0	0	5	26	merge_repeat				nested
chr2	16526880	G	T	999	11 11 11 11 11 11 11 11	48	0	0	32	32	0	0	41	23	0	0	36	23	0	0	30	42	0	0	28	30	0	0	27	21	0	0	35	26	0	0	36	25
chr2	16685831	G	A	999	11 11 11 11 11 11 11 11	59	0	0	36	33	0	0	42	36	0	0	42	30	0	0	35	25	0	0	33	51	0	0	30	30	0	0	39	34	0	0	34	25
chr2	20961835	G	A	999	11 11 11 11 11 11 11 11	31	0	0	27	30	0	1	28	29	0	0	17	14	0	0	45	26	0	0	22	37	0	0	23	22	0	0	33	29	0	0	25	28	merge_repeat	trfMask	chromOut	simple
chr2	22544697	G	A	999	11 11 11 11 11 11 11 11	45	0	0	34	27	0	0	30	30	0	0	25	27	0	0	22	23	0	0	27	38	0	0	26	23	0	0	27	26	0	0	24	26
chr2	22545252	T	A	999	11 11 11 11 11 11 11 11	50	0	0	36	27	0	0	21	30	0	0	34	45	0	0	34	35	0	0	25	34	0	0	27	23	0	0	28	30	0	0	22	34
chr2	25101798	T	G	999	11 11 11 11 11 11 11 11	29	0	0	14	15	0	0	11	21	0	0	15	16	0	0	25	16	0	0	11	28	0	0	16	16	0	0	21	27	0	0	18	14	merge_repeat	trfMask	chromOut	simple
chr2	25553660	G	T	999	11 11 11 11 11 11 11 11	23	0	0	20	16	0	0	20	6	0	0	17	12	0	0	18	6	0	0	19	11	0	0	29	6	0	0	17	6	0	0	20	6	merge_repeat		chromOut
chr2	26418367	A	G	999	11 11 11 11 11 11 11 11	46	0	0	35	27	0	0	43	27	0	0	38	28	0	0	41	31	0	0	42	32	0	0	36	24	0	0	25	21	0	0	45	17	merge_repeat		chromOut
chr2	29955277	C	T	999	11 11 11 11 11 11 11 11	58	0	0	30	36	0	0	22	38	0	0	26	32	0	0	36	42	0	0	36	36	0	0	34	37	0	0	35	31	0	0	31	41	merge_repeat		chromOut
chr2	30328626	A	C	999	11 11 11 11 11 11 11 11	26	0	0	13	18	0	0	11	25	0	0	15	11	0	0	12	35	0	0	26	23	0	0	14	15	0	0	19	24	0	0	16	14
chr2	30417420	T	C	999	11 11 11 11 11 11 11 11	21	0	0	23	6	0	0	16	5	0	0	21	6	0	0	23	8	1	0	20	11	0	0	22	6	0	0	20	3	0	0	15	6	merge_repeat		chromOut
chr2	30972314	A	T	999	11 11 11 11 11 11 11 11	36	0	0	22	19	0	0	15	25	0	0	15	24	0	0	16	20	0	0	24	29	0	0	18	20	0	0	27	23	0	0	27	16	merge_repeat	trfMask	chromOut	simple
chr2	31168260	T	C	999	11 11 11 11 11 11 11 11	38	0	0	25	33	0	0	22	31	0	0	25	35	0	0	26	30	0	0	26	29	0	0	20	27	0	0	12	26	0	0	28	33	merge_repeat		chromOut
chr2	34063278	C	A	999	11 11 11 11 11 11 11 11	34	0	0	18	21	0	1	19	20	0	0	22	18	0	0	17	27	0	0	19	25	0	0	19	22	0	0	15	19	0	0	19	22	merge_repeat		chromOut	simple	nested
chr2	35183994	A	C	999	11 11 11 11 11 11 11 11	55	0	0	31	48	0	0	34	45	0	0	27	43	0	0	35	40	0	0	22	38	0	0	22	33	0	0	31	44	0	0	31	40
chr2	37591744	A	T	999	11 11 11 11 11 11 11 11	21	0	0	14	12	0	0	19	14	0	0	13	16	0	0	15	19	0	0	12	17	0	0	10	11	0	0	12	10	0	0	16	12	merge_repeat		chromOut
chr2	37591747	A	T	999	11 11 11 11 11 11 11 11	21	0	0	14	12	0	0	17	14	0	0	12	16	0	0	15	20	0	0	11	17	0	0	10	11	0	0	12	10	0	0	15	13	merge_repeat		chromOut
chr2	37591750	A	T	999	11 11 11 11 11 11 11 11	23	0	0	16	12	0	0	17	15	0	0	12	16	0	0	14	21	0	0	11	19	0	0	10	14	0	0	11	12	0	0	16	13	merge_repeat		chromOut
chr2	39964870	A	G	999	11 11 11 11 11 11 11 11	60	0	0	37	50	0	0	26	34	0	0	49	37	0	0	36	43	0	0	45	28	0	0	31	47	0	0	31	49	0	0	28	55
chr2	40240957	A	C	999	11 11 11 11 11 11 11 11	67	0	0	37	42	0	0	38	42	0	0	37	30	0	0	33	39	0	0	34	38	0	0	40	40	0	0	34	37	0	0	40	47	merge_repeat		chromOut
chr2	40598035	A	C	999	11 11 11 11 11 11 11 11	52	0	0	33	45	0	0	33	63	0	0	26	39	0	0	30	30	0	0	24	28	0	0	32	24	0	0	35	36	0	0	44	51
chr2	44563954	C	T	999	11 11 11 11 11 11 11 11	34	0	0	19	16	0	0	18	23	0	0	36	18	0	0	33	23	0	0	27	25	0	0	24	10	0	0	25	20	0	0	25	18
chr2	46058442	A	C	999	11 11 11 11 11 11 11 11	39	0	0	25	25	0	0	31	13	0	0	24	15	0	0	36	16	0	0	37	23	0	0	30	23	0	0	21	18	0	0	29	18	merge_repeat		chromOut	simple
chr2	46504348	T	C	999	11 11 11 11 11 11 11 11	21	0	1	14	15	0	1	12	18	0	0	18	12	0	0	8	15	0	0	17	15	0	0	9	12	0	0	9	19	0	0	9	22	merge_repeat	trfMask	chromOut	simple	nested
chr2	46873598	T	C	999	11 11 11 11 11 11 11 11	51	0	0	23	35	0	0	23	36	0	0	26	39	0	0	30	23	0	0	31	20	0	0	32	33	0	0	29	29	0	0	24	31	merge_repeat	trfMask	chromOut	simple
chr2	49496179	T	C	999	11 11 11 11 11 11 11 11	70	0	0	34	45	0	0	38	32	0	0	26	49	0	0	41	34	0	0	35	41	0	0	30	47	0	0	33	44	0	0	34	44	merge_repeat		chromOut		nested
chr2	50749405	C	A	999	11 11 11 11 11 11 11 11	23	0	0	23	10	1	0	26	6	0	0	20	9	0	0	25	7	0	0	17	12	0	0	22	13	0	0	17	6	1	0	25	8	merge_repeat		chromOut	simple
chr2	51969570	T	C	999	11 11 11 11 11 11 11 11	53	0	0	25	46	0	0	29	40	0	0	33	27	0	0	29	37	0	0	26	38	0	0	38	33	0	0	35	37	0	0	23	30
chr2	53155113	C	T	999	11 11 11 11 11 11 11 11	34	0	0	31	22	0	0	29	20	0	0	25	15	0	0	26	26	0	0	15	19	0	0	26	24	0	0	22	28	0	0	18	22
chr2	53157085	T	A	999	11 11 11 11 11 11 11 11	30	0	0	28	17	0	0	16	22	0	0	13	18	0	0	20	25	0	0	21	15	0	0	21	23	0	0	24	11	0	0	19	11	merge_repeat	trfMask	chromOut	simple
chr2	55994003	C	T	999	11 11 11 11 11 11 11 11	41	0	0	27	24	0	0	27	29	0	0	31	20	0	0	25	21	0	0	24	23	0	0	24	24	0	0	29	28	0	0	22	19	merge_repeat		chromOut		nested
chr2	56335802	C	T	999	11 11 11 11 11 11 11 11	49	0	0	46	26	0	0	42	26	0	0	34	15	0	0	49	23	0	0	42	23	0	0	32	30	0	0	34	29	0	0	32	31
chr2	57727074	A	G	999	11 11 11 11 11 11 11 11	23	0	0	14	20	1	0	12	12	0	0	12	11	0	0	19	27	0	0	21	17	0	0	10	15	0	0	10	18	0	0	14	12	merge_repeat		chromOut		nested
chr2	59054377	G	C	999	11 11 11 11 11 11 11 11	37	0	0	29	27	0	0	19	39	0	0	16	21	0	0	23	31	0	0	29	32	0	0	18	34	0	0	21	33	0	0	21	34
chr2	60386364	A	C	999	11 11 11 11 11 11 11 11	21	0	0	17	19	0	0	13	21	0	0	10	22	0	0	17	15	0	0	25	30	0	0	25	26	0	0	30	12	0	0	8	13	merge_repeat		chromOut	simple
chr2	63546900	T	C	999	11 11 11 11 11 11 11 11	67	0	0	34	54	0	0	44	53	0	0	32	35	0	0	34	42	0	0	31	43	0	0	38	35	0	0	38	46	0	0	36	33
chr2	65006200	A	C	999	11 11 11 11 11 11 11 11	63	0	0	25	40	0	0	26	41	0	0	29	34	0	0	35	43	0	0	29	46	0	0	33	30	0	0	20	50	0	0	33	38
chr2	68454375	T	A	999	11 11 11 11 11 11 11 11	27	0	0	20	20	0	0	17	18	0	0	15	17	0	0	11	21	0	0	23	16	0	0	17	19	0	0	18	9	0	0	18	12	merge_repeat	trfMask	chromOut	simple
chr2	70888791	G	A	999	11 11 11 11 11 11 11 11	30	0	0	26	23	1	0	17	19	0	0	26	15	0	0	16	14	0	0	25	31	0	0	22	16	0	0	25	15	0	0	20	18
chr2	72190532	A	T	999	11 11 11 11 11 11 11 11	52	0	0	23	30	0	0	26	27	0	0	24	34	0	0	26	26	0	0	22	32	0	0	26	33	0	0	20	38	0	0	37	28
chr2	75798185	A	G	999	11 11 11 11 11 11 11 11	30	0	0	19	14	0	0	24	13	0	0	19	21	0	0	29	20	0	0	29	19	0	0	24	17	0	0	17	13	0	0	21	14	merge_repeat		chromOut
chr2	77022515	T	C	999	11 11 11 11 11 11 11 11	61	0	0	31	36	0	0	28	33	0	0	37	34	0	0	44	41	0	0	32	52	0	0	35	26	0	0	42	50	0	0	37	31
chr2	78757991	A	G	999	11 11 11 11 11 11 11 11	33	0	0	18	17	0	0	12	26	0	0	13	25	0	0	18	17	0	0	21	25	0	0	17	25	0	0	16	19	0	0	21	12	merge_repeat		chromOut
chr2	79789122	A	G	999	11 11 11 11 11 11 11 11	49	0	0	31	34	0	0	35	31	0	0	25	38	0	1	22	32	0	0	31	31	0	0	26	24	0	0	32	25	0	0	21	28
chr2	79921261	G	C	999	11 11 11 11 11 11 11 11	40	0	0	23	35	0	0	28	30	0	0	29	31	0	0	24	31	0	0	29	34	0	0	24	16	0	0	30	28	0	0	28	24
chr2	80151293	C	T	999	11 11 11 11 11 11 11 11	24	0	1	17	8	0	0	24	7	0	0	16	8	0	0	25	11	0	0	26	20	0	0	22	15	0	0	29	12	0	0	27	9	merge_repeat	trfMask	chromOut	simple
chr2	80551177	C	T	999	11 11 11 11 11 11 11 11	46	1	0	18	32	0	0	20	29	0	0	27	20	0	0	27	27	0	0	29	42	0	0	23	33	0	0	26	20	0	0	28	27	merge_repeat		chromOut
chr2	85184099	A	C	999	11 11 11 11 11 11 11 11	37	0	0	14	23	0	0	20	26	0	0	12	26	1	0	21	26	0	0	28	28	0	0	23	24	0	0	31	17	0	0	17	22	merge_repeat	trfMask	chromOut	simple
chr2	85239467	T	A	999	11 11 11 11 11 11 11 11	20	0	0	21	9	0	0	30	11	0	0	14	14	0	0	21	19	0	0	17	20	0	0	11	9	0	0	15	12	0	0	13	16	merge_repeat		chromOut
chr2	85239470	T	G	999	11 11 11 11 11 11 11 11	21	0	0	21	10	0	0	32	11	0	0	13	14	0	0	24	22	0	0	17	19	0	0	11	10	0	0	15	12	0	0	14	17	merge_repeat		chromOut
chr2	88821230	A	G	999	11 11 11 11 11 11 11 11	64	0	0	30	43	0	0	36	31	0	0	38	34	0	0	43	22	0	0	42	28	0	0	25	39	0	0	36	36	0	0	33	35	merge_repeat		chromOut
chr2	91310158	G	T	999	11 11 11 11 11 11 11 11	22	0	0	18	4	0	0	26	6	0	0	26	5	0	0	20	10	0	0	28	6	0	0	28	5	0	0	21	9	0	0	19	5
chr2	92206356	A	C	999	11 11 11 11 11 11 11 11	39	0	0	31	26	0	0	24	28	0	0	30	25	0	0	35	30	0	0	28	26	0	0	18	21	0	0	27	18	0	0	27	19	merge_repeat		chromOut
chr2	93510918	A	C	999	11 11 11 11 11 11 11 11	40	0	0	24	16	0	0	29	17	0	0	23	28	0	0	17	27	0	0	30	29	0	0	27	15	0	0	19	28	0	0	20	20	merge_repeat		chromOut
chr2	97022789	A	G	999	11 11 11 11 11 11 11 11	23	0	0	33	4	0	0	19	4	0	0	20	5	0	0	23	7	0	0	29	3	0	0	23	3	0	0	29	5	0	0	22	3	merge_repeat		chromOut		nested
chr2	97022918	A	G	999	11 11 11 11 11 11 11 11	23	0	0	31	9	0	0	16	7	0	0	24	11	0	0	28	11	0	0	39	9	0	0	26	12	0	0	29	20	0	0	26	7	merge_repeat		chromOut		nested
chr2	98039006	T	C	999	11 11 11 11 11 11 11 11	42	0	0	22	38	0	0	21	26	0	0	24	35	0	0	20	32	0	0	35	29	0	0	20	22	0	0	26	36	0	0	18	29
chr2	98125430	G	A	999	11 11 11 11 11 11 11 11	29	0	0	32	16	0	0	22	16	0	0	32	12	0	0	28	21	0	0	36	9	0	0	32	13	0	0	29	9	0	0	20	9
chr2	98388036	G	T	999	11 11 11 11 11 11 11 11	49	0	0	30	25	2	1	34	22	0	0	31	32	0	0	37	33	0	0	31	18	0	0	42	17	0	2	39	32	0	0	28	27	merge_repeat		chromOut		nested
chr2	98388052	C	T	999	11 11 11 11 11 11 11 11	40	0	0	29	23	0	0	35	21	0	0	35	29	0	0	40	30	0	0	26	14	0	0	39	17	0	2	38	33	0	0	30	28	merge_repeat		chromOut		nested
chr2	99972882	G	T	999	11 11 11 11 11 11 11 11	32	0	0	25	20	0	0	28	21	0	0	15	27	0	0	22	18	0	0	26	19	0	0	20	18	0	0	27	19	0	0	18	14	merge_repeat		chromOut
chr2	101393906	T	G	999	11 11 11 11 11 11 11 11	35	0	0	20	26	0	0	24	18	0	0	24	16	0	0	15	21	0	0	23	31	0	0	16	21	0	0	24	29	0	0	15	20	merge_repeat	trfMask	chromOut	simple	nested
chr2	103850113	T	C	999	11 11 11 11 11 11 11 11	21	0	0	8	19	0	0	7	14	0	0	7	23	0	0	5	24	0	0	6	16	0	0	5	22	0	0	7	24	0	0	5	27	merge_repeat		chromOut
chr2	105554148	A	G	999	11 11 11 11 11 11 11 11	22	0	0	4	32	0	0	7	19	0	0	6	23	0	0	4	23	0	0	1	23	0	0	11	24	0	0	6	22	0	0	5	17	merge_repeat				nested
chr2	105630435	A	G	999	11 11 11 11 11 11 11 11	23	0	0	15	13	1	0	19	11	0	0	16	9	0	0	18	13	0	0	11	17	0	0	20	10	1	0	19	12	0	0	14	9	merge_repeat		chromOut
chr2	106966234	A	T	999	11 11 11 11 11 11 11 11	39	0	0	30	32	0	0	34	32	0	0	20	30	0	0	28	18	0	0	35	33	0	0	20	30	0	0	33	30	0	0	16	23	merge_repeat		chromOut		nested
chr2	107113702	C	A	999	11 11 11 11 11 11 11 11	50	0	1	40	29	0	0	39	39	1	0	29	40	0	0	37	28	0	0	26	24	0	0	26	30	0	0	27	31	0	0	29	30	merge_repeat		chromOut
chr2	108715887	A	G	999	11 11 11 11 11 11 11 11	20	0	0	7	13	0	0	8	14	0	0	9	17	0	0	6	17	0	0	13	18	0	0	9	11	0	0	6	14	0	0	7	16	merge_repeat		chromOut		nested
chr2	108715924	A	C	999	11 11 11 11 11 11 11 11	21	0	0	9	12	0	0	16	13	0	0	18	14	0	0	14	20	0	0	17	12	0	0	16	11	0	0	12	17	0	0	12	11	merge_repeat		chromOut		nested
chr2	108753037	A	G	999	11 11 11 11 11 11 11 11	50	0	0	20	36	0	0	24	44	0	0	20	43	0	0	27	42	0	0	23	36	0	0	15	35	0	0	22	38	0	0	31	50
chr2	111534495	A	C	999	11 11 11 11 11 11 11 11	50	0	0	25	32	0	0	29	30	0	0	23	29	0	0	29	28	0	0	26	33	0	0	16	34	0	0	20	35	0	0	33	32
chr2	113926902	T	C	999	11 11 11 11 11 11 11 11	32	0	0	14	29	0	0	21	11	0	0	19	25	0	0	14	24	0	0	19	28	0	0	17	31	0	0	11	27	0	0	17	27	merge_repeat		chromOut		nested
chr2	113926903	T	G	999	11 11 11 11 11 11 11 11	32	0	0	13	29	0	0	21	11	0	0	19	25	0	0	14	24	0	0	19	29	0	0	17	31	0	0	11	27	0	0	17	27	merge_repeat		chromOut		nested
chr2	113939451	T	C	999	11 11 11 11 11 11 11 11	54	0	0	31	25	0	0	28	33	0	0	30	36	0	0	46	29	0	0	34	35	0	0	31	26	0	0	29	36	0	0	23	31
chr2	113939471	G	C	999	11 11 11 11 11 11 11 11	51	0	0	28	23	0	0	29	31	0	0	31	34	0	0	45	23	0	0	29	32	0	0	35	26	0	0	28	41	0	0	25	33
chr2	113939488	C	T	999	11 11 11 11 11 11 11 11	48	0	0	24	24	0	0	24	28	0	0	31	31	0	0	44	28	0	0	31	30	0	0	38	30	0	0	36	40	0	0	27	34
chr2	116032439	T	A	999	11 11 11 11 11 11 11 11	30	0	0	19	25	0	0	12	21	0	0	13	27	0	0	21	27	0	0	23	33	0	0	22	29	0	0	23	16	0	0	10	20	merge_repeat	trfMask	chromOut	simple
chr2	117406082	T	G	999	11 11 11 11 11 11 11 11	24	0	0	20	4	0	0	21	12	0	0	17	7	0	0	23	9	0	0	36	14	0	0	26	10	0	0	22	6	0	0	21	8	merge_repeat	trfMask	chromOut	simple
chr2	117406087	T	G	999	11 11 11 11 11 11 11 11	26	0	0	22	5	0	0	22	12	0	0	17	9	0	0	23	10	0	0	34	16	0	0	25	10	0	0	22	6	0	1	19	6	merge_repeat	trfMask	chromOut	simple
chr2	117729474	G	A	999	11 11 11 11 11 11 11 11	54	0	0	21	36	0	0	30	39	0	0	34	34	0	0	22	32	0	0	29	48	0	0	27	35	0	0	33	30	0	0	29	42
chr2	119026937	A	C	999	11 11 11 11 11 11 11 11	48	0	0	24	32	0	0	23	36	0	0	25	36	0	0	29	42	0	0	19	29	0	0	32	31	0	0	35	24	1	0	34	34
chr2	119129659	A	C	999	11 11 11 11 11 11 11 11	38	0	0	21	17	0	0	19	29	0	0	21	20	0	0	28	18	0	0	41	16	0	0	27	20	0	0	27	16	0	0	23	18	merge_repeat		chromOut
chr2	119495307	T	G	999	11 11 11 11 11 11 11 11	34	0	0	35	20	0	0	30	17	0	0	23	16	0	0	32	21	0	0	31	20	0	0	30	14	0	0	23	23	0	0	17	17	merge_repeat			simple
chr2	119805117	T	G	999	11 11 11 11 11 11 11 11	33	0	0	16	18	0	0	15	18	0	0	20	21	0	0	16	20	0	0	29	19	0	0	19	27	0	0	21	19	0	0	26	21	merge_repeat		chromOut
chr2	125994083	A	C	999	11 11 11 11 11 11 11 11	25	0	0	11	21	0	0	17	14	0	0	7	18	0	0	15	19	0	0	13	18	0	0	20	27	0	0	18	23	0	0	17	12	merge_repeat	trfMask	chromOut	simple
chr2	128490761	T	G	999	11 11 11 11 11 11 11 11	24	0	0	14	12	0	0	12	12	0	0	17	17	0	0	24	21	0	0	22	17	0	0	11	13	0	0	10	18	0	0	14	20	merge_repeat	trfMask	chromOut	simple
chr2	128786755	T	G	999	11 11 11 11 11 11 11 11	34	0	0	18	16	0	0	24	27	0	0	22	26	0	0	32	25	0	0	15	28	0	0	20	24	0	0	18	25	0	0	17	17	merge_repeat		chromOut
chr2	131163052	A	G	999	11 11 11 11 11 11 11 11	39	0	0	18	29	0	0	23	21	0	0	21	27	0	0	24	24	0	0	24	28	0	0	25	16	0	0	23	23	0	0	18	21	merge_repeat		chromOut	simple	nested
chr2	132008048	T	G	999	11 11 11 11 11 11 11 11	26	0	0	17	9	0	0	24	6	0	0	20	7	0	0	26	16	0	0	25	20	0	0	30	8	0	0	26	16	0	0	30	11	merge_repeat		chromOut
chr2	133847368	T	C	999	11 11 11 11 11 11 11 11	24	1	0	5	34	0	0	7	17	1	0	12	25	0	0	9	28	0	0	11	19	0	0	13	25	0	0	11	20	0	0	7	22	merge_repeat		chromOut
chr2	136619980	A	C	999	11 11 11 11 11 11 11 11	26	0	0	13	13	0	0	16	19	0	0	19	20	0	0	19	25	0	0	20	25	0	0	17	18	0	0	17	17	0	0	19	14	merge_repeat		chromOut
chr2	136619986	A	T	999	11 11 11 11 11 11 11 11	26	0	0	12	14	0	0	15	17	0	0	19	22	0	0	19	24	0	0	18	26	0	0	18	19	0	0	16	17	0	0	16	15	merge_repeat		chromOut
chr2	138806901	T	G	999	11 11 11 11 11 11 11 11	61	0	0	35	29	0	0	40	34	0	0	35	29	0	0	29	33	0	0	31	30	0	0	22	39	0	0	35	43	0	0	40	43
chr2	138806902	T	A	999	11 11 11 11 11 11 11 11	61	0	0	35	30	0	0	39	33	0	0	35	28	0	0	30	33	0	0	31	30	0	0	22	40	0	0	35	42	0	0	40	41
chr2	140404616	T	G	999	11 11 11 11 11 11 11 11	30	0	0	11	19	0	0	20	33	0	0	27	22	0	0	26	30	0	0	26	39	0	0	28	32	0	0	15	22	0	0	14	34	merge_repeat				nested
chr2	141057091	A	C	999	11 11 11 11 11 11 11 11	33	0	0	19	17	0	0	14	21	0	0	30	16	0	0	21	18	0	0	26	29	0	0	19	14	0	0	23	14	0	0	24	14	merge_repeat		chromOut	simple
chr2	141793688	T	C	999	11 11 11 11 11 11 11 11	48	0	0	31	23	0	0	33	24	0	0	30	18	0	0	33	31	0	0	29	25	0	0	28	31	0	0	39	27	0	0	26	33
chr2	146274781	T	G	999	11 11 11 11 11 11 11 11	24	0	0	7	17	0	0	12	27	0	0	13	22	0	0	21	29	0	0	16	34	0	0	9	30	0	0	15	26	0	0	15	31	merge_repeat		chromOut	simple
chr2	146485849	T	C	999	11 11 11 11 11 11 11 11	22	0	0	27	8	0	0	30	7	0	0	28	4	0	0	18	16	0	0	21	13	0	0	14	8	0	0	14	12	0	0	19	9
chr2	148180302	C	A	999	11 11 11 11 11 11 11 11	21	0	0	19	5	0	0	29	4	0	0	22	5	0	0	22	5	0	0	24	6	0	0	24	6	0	0	21	8	0	0	17	4
chr2	148523915	T	C	999	11 11 11 11 11 11 11 11	58	0	0	32	36	0	0	34	27	0	0	36	33	0	0	38	33	0	0	43	29	0	0	21	37	0	0	37	38	0	0	41	36
chr2	148941520	C	T	999	11 11 11 11 11 11 11 11	40	0	0	22	19	0	0	25	30	0	0	21	33	0	0	30	26	0	1	28	21	0	0	20	20	0	0	25	26	0	0	26	18	merge_repeat		chromOut
chr2	148941527	T	A	999	11 11 11 11 11 11 11 11	43	2	1	25	19	2	1	28	27	1	0	19	28	0	1	30	24	1	0	27	21	1	0	21	21	0	0	26	23	2	0	27	18	merge_repeat		chromOut
chr2	148941534	C	T	999	11 11 11 11 11 11 11 11	43	0	0	25	20	0	0	31	26	0	0	21	29	0	0	32	27	0	0	30	21	0	0	23	20	0	0	27	22	0	0	28	20	merge_repeat		chromOut
chr2	149582924	T	C	999	11 11 11 11 11 11 11 11	40	0	0	15	25	0	0	28	31	0	0	29	24	0	0	19	21	0	0	23	34	0	0	23	23	0	0	23	23	0	0	28	21
chr2	150308220	G	A	999	11 11 11 11 11 11 11 11	34	1	0	16	19	1	0	20	13	1	1	23	16	1	0	28	22	0	1	19	24	0	0	27	18	0	0	30	27	0	0	25	20	merge_repeat	trfMask	chromOut	simple
chr2	152492554	T	C	999	11 11 11 11 11 11 11 11	23	0	0	24	13	0	0	12	15	0	0	19	9	0	0	26	13	0	0	32	11	0	0	31	6	0	0	15	8	0	0	18	10	merge_repeat		chromOut		nested
chr2	152846969	G	C	999	11 11 11 11 11 11 11 11	23	0	0	16	11	0	0	9	14	0	0	14	17	0	0	16	17	0	0	15	14	0	0	16	10	0	0	13	11	0	0	18	7	merge_repeat		chromOut		nested
chr2	155232069	C	G	999	11 11 11 11 11 11 11 11	58	0	0	20	39	0	0	28	30	0	0	30	46	0	0	33	41	0	0	37	31	0	0	34	33	0	0	26	45	0	0	32	28
chr2	156397224	A	T	999	11 11 11 11 11 11 11 11	38	0	0	28	26	0	0	38	20	0	0	16	22	0	0	38	27	0	0	41	23	0	0	18	22	0	0	21	18	0	0	27	22	merge_repeat	trfMask	chromOut	simple
chr2	158604902	T	G	999	11 11 11 11 11 11 11 11	36	0	0	24	28	0	0	26	30	0	0	21	33	0	0	36	43	0	0	29	37	0	0	19	32	0	0	15	21	0	0	19	32
chr2	160335911	A	G	999	11 11 11 11 11 11 11 11	56	0	0	38	27	0	0	29	40	0	0	32	42	0	0	29	40	0	0	36	33	0	0	25	32	0	0	31	40	0	0	27	29
chr2	162980299	G	T	999	11 11 11 11 11 11 11 11	27	0	0	31	25	0	0	15	14	0	0	22	19	0	0	29	17	0	0	27	11	0	0	13	14	0	0	21	15	0	0	18	18	merge_repeat	trfMask	chromOut	simple
chr2	166143719	A	C	999	11 11 11 11 11 11 11 11	49	0	0	26	26	0	0	26	28	0	0	28	33	0	0	39	33	0	0	34	15	0	0	20	30	0	0	24	26	0	0	28	24	merge_repeat		chromOut
chr2	166720887	A	T	999	11 11 11 11 11 11 11 11	44	0	0	22	34	0	1	31	25	2	0	19	31	1	0	19	24	0	1	24	27	1	1	32	25	0	1	28	19	1	0	27	29	merge_repeat		chromOut		nested
chr2	169140284	T	A	999	11 11 11 11 11 11 11 11	26	0	0	21	14	0	0	10	18	0	0	7	25	0	0	16	17	0	0	12	22	0	0	9	17	0	0	12	14	0	0	18	13	merge_repeat		chromOut	simple
chr2	171048414	A	T	999	11 11 11 11 11 11 11 11	25	0	0	10	15	0	0	10	17	0	0	14	17	0	0	10	26	0	0	15	21	0	0	13	15	0	0	13	20	0	0	17	13	merge_repeat		chromOut
chr2	171433206	A	G	999	11 11 11 11 11 11 11 11	44	0	0	29	24	0	0	32	33	0	0	20	40	0	0	31	31	0	0	28	30	0	0	21	37	0	0	20	24	0	0	27	33
chr2	171817806	A	G	999	11 11 11 11 11 11 11 11	21	0	0	8	29	0	0	16	19	0	0	14	18	0	1	15	20	0	0	19	21	0	0	8	17	0	0	8	13	0	0	12	17
chr2	172658782	A	T	999	11 11 11 11 11 11 11 11	35	0	0	22	20	0	0	21	22	0	0	22	18	0	0	28	24	0	0	33	21	0	0	26	20	0	0	23	17	0	0	15	20
chr2	172659551	C	G	999	11 11 11 11 11 11 11 11	42	0	0	40	9	0	0	36	9	0	0	34	11	0	0	43	21	0	0	32	18	0	0	29	13	0	0	49	11	0	0	33	10	merge_repeat	trfMask	chromOut	simple
chr2	172778812	A	C	999	11 11 11 11 11 11 11 11	25	0	0	15	18	0	0	14	21	0	0	6	19	0	0	15	27	0	0	13	27	0	0	8	26	0	0	11	32	0	0	10	24	merge_repeat	trfMask	chromOut	simple
chr2	175078774	G	A	999	11 11 11 11 11 11 11 11	21	0	0	12	9	0	0	12	10	0	0	15	7	0	0	17	6	0	0	15	10	0	0	20	4	0	1	18	6	0	0	14	11	merge_repeat					segmentDup
chr2	177466778	T	C	999	11 11 11 11 11 11 11 11	30	0	0	9	21	0	0	12	22	0	0	10	28	0	0	15	27	0	0	24	27	0	0	16	26	0	0	13	33	0	0	11	28	merge_repeat					segmentDup
chr2	177466796	G	C	999	11 11 11 11 11 11 11 11	28	0	0	8	20	0	0	12	22	0	0	9	28	0	0	15	26	0	0	21	27	0	0	13	23	0	1	11	31	0	0	9	28	merge_repeat					segmentDup
chr2	178073428	C	G	999	11 11 11 11 11 11 11 11	46	0	0	37	25	0	0	35	19	1	0	32	39	0	0	22	24	0	0	25	30	0	0	39	26	1	0	28	23	0	0	24	25	merge_repeat					segmentDup
chr2	178290545	G	C	999	11 11 11 11 11 11 11 11	28	0	0	32	22	0	0	16	12	0	0	19	27	0	0	24	38	0	0	26	41	0	0	17	25	0	0	25	34	0	0	32	29	merge_repeat		chromOut	simple	nested
chr2	178833900	C	A	999	11 11 11 11 11 11 11 11	22	0	0	20	2	0	0	23	1	0	0	19	8	0	1	29	5	0	0	29	4	0	1	21	2	0	0	18	5	0	0	18	5	merge_repeat		chromOut
chr2	179056611	C	G	999	11 11 11 11 11 11 11 11	21	0	0	9	16	0	0	4	17	0	0	4	25	0	0	6	34	0	0	14	23	0	0	12	27	0	0	11	17	0	0	10	25	merge_repeat		chromOut		nested
chr2	179080163	C	A	999	11 11 11 11 11 11 11 11	34	0	0	18	16	0	0	31	9	0	0	30	16	0	0	35	18	0	0	25	22	0	0	30	13	0	0	21	13	0	0	40	15	merge_repeat	trfMask	chromOut	simple
chr2	179112232	T	G	999	11 11 11 11 11 11 11 11	20	0	0	12	12	0	0	24	11	0	0	9	11	0	0	21	13	0	0	13	15	0	0	17	9	0	0	10	12	0	0	12	8	merge_repeat		chromOut		nested
chr2	180254633	A	C	999	11 11 11 11 11 11 11 11	37	0	0	20	18	0	0	27	21	0	0	28	14	0	0	23	22	0	0	40	24	0	0	24	13	0	0	23	20	0	0	25	15