chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr19	3490564	C	G	999	11 11 11 11 11 11 11 11	55	0	0	29	43	0	0	29	36	0	0	35	41	0	0	37	36	0	0	36	29	0	0	27	28	0	0	27	33	0	0	40	24	merge_repeat		chromOut
chr19	7165514	G	A	999	11 11 11 11 11 11 11 11	30	0	0	23	24	0	0	17	13	0	0	16	29	0	0	28	27	0	0	23	21	0	0	30	20	0	0	32	26	0	0	19	17
chr19	7165521	T	C	999	11 11 11 11 11 11 11 11	36	0	0	24	22	0	0	19	17	0	0	14	29	0	0	25	28	0	0	25	22	0	0	32	19	0	0	33	28	0	0	20	21
chr19	7165535	T	C	999	11 11 11 11 11 11 11 11	38	0	0	25	16	0	0	22	16	0	0	18	26	0	0	29	22	0	0	28	20	0	0	34	17	0	0	33	22	0	0	20	18
chr19	8170309	T	C	999	11 11 11 11 11 11 11 11	24	0	0	19	22	0	0	17	29	0	0	21	18	0	0	17	21	0	0	11	16	0	0	11	13	0	0	25	18	0	0	15	20	merge_repeat					segmentDup
chr19	9785539	T	C	999	11 11 11 11 11 11 11 11	34	0	0	23	30	0	0	19	15	0	0	35	33	0	0	19	19	0	0	14	31	0	0	26	18	0	0	38	24	0	0	25	21	merge_repeat		chromOut		nested
chr19	13467917	A	C	999	11 11 11 11 11 11 11 11	61	0	0	33	30	0	0	44	23	0	0	45	35	0	0	42	39	0	0	49	41	0	0	35	42	0	0	37	24	0	0	41	33
chr19	16596655	A	C	999	11 11 11 11 11 11 11 11	25	0	0	19	12	0	0	12	14	1	0	25	12	0	0	24	13	0	0	14	15	0	0	12	13	0	0	23	16	1	0	15	15	merge_repeat	trfMask	chromOut	simple	nested
chr19	21353278	T	G	999	11 11 11 11 11 11 11 11	45	0	0	21	32	0	0	25	33	0	0	28	39	0	0	23	50	0	0	36	37	0	0	21	33	0	0	18	27	0	0	21	35	merge_repeat		chromOut
chr19	24031069	G	C	999	11 11 11 11 11 11 11 11	26	0	0	20	6	0	0	23	11	0	0	31	9	0	0	26	17	0	0	31	14	0	0	17	12	0	0	27	10	0	0	22	12	merge_repeat		chromOut
chr19	24956334	T	C	999	11 11 11 11 11 11 11 11	45	0	0	20	31	0	0	28	40	0	0	20	25	0	0	29	32	0	0	29	39	0	0	25	39	0	0	24	33	0	0	26	26	merge_repeat	trfMask	chromOut	simple
chr19	26459646	A	G	999	11 11 11 11 11 11 11 11	38	0	0	27	23	0	0	20	27	0	0	34	33	0	0	18	23	0	0	17	33	0	0	25	23	0	0	17	27	0	0	16	22	merge_repeat		chromOut		nested
chr19	27273175	G	C	999	11 11 11 11 11 11 11 11	22	0	1	20	15	0	0	18	18	0	0	10	15	0	1	16	18	0	0	19	19	0	0	22	14	0	0	5	17	0	0	13	20	merge_repeat	trfMask	chromOut	simple	nested
chr19	27329605	C	T	999	11 11 11 11 11 11 11 11	20	0	0	25	6	0	0	18	7	0	0	12	8	0	0	19	11	0	0	18	9	0	0	19	12	0	0	17	7	0	0	15	8
chr19	27329656	C	A	999	11 11 11 11 11 11 11 11	29	0	0	31	7	0	0	32	6	0	0	21	8	0	0	30	12	0	0	28	12	0	0	24	11	0	0	27	7	0	0	23	7
chr19	27329714	C	A	999	11 11 11 11 11 11 11 11	34	0	0	40	7	0	0	37	7	0	0	36	5	0	0	32	11	0	0	30	12	0	0	25	11	0	0	35	9	0	0	27	7
chr19	28048093	G	C	999	11 11 11 11 11 11 11 11	50	0	0	30	26	0	0	32	33	0	0	25	25	0	0	39	20	0	0	27	27	0	0	32	24	0	0	26	31	0	0	28	31
chr19	28909246	T	G	999	11 11 11 11 11 11 11 11	31	0	0	18	15	0	0	27	20	0	0	18	13	0	0	29	23	0	0	28	23	0	0	32	20	0	0	15	24	1	0	17	26
chr19	28915710	G	C	999	11 11 11 11 11 11 11 11	44	0	0	20	27	0	0	13	34	0	0	17	30	0	0	34	22	0	0	20	33	0	0	18	26	0	0	19	26	0	0	30	28
chr19	28915711	G	T	999	11 11 11 11 11 11 11 11	43	0	0	19	27	0	0	13	34	0	0	16	31	0	0	34	22	0	0	20	33	0	0	17	26	0	0	19	26	0	0	30	28
chr19	29978186	C	A	999	11 11 11 11 11 11 11 11	36	0	0	13	23	0	0	24	31	0	0	27	20	0	0	20	23	0	0	22	31	0	0	16	22	0	0	19	17	0	0	24	22	merge_repeat		chromOut		nested
chr19	30419671	C	T	999	11 11 11 11 11 11 11 11	22	0	0	13	11	0	0	20	15	0	0	17	21	0	0	15	15	0	0	19	19	0	0	17	7	0	0	19	15	0	0	10	12
chr19	30482453	G	T	999	11 11 11 11 11 11 11 11	26	0	0	19	9	0	0	23	12	0	0	20	8	0	0	26	11	0	0	28	15	0	0	25	7	0	0	16	10	0	0	22	11
chr19	31484461	C	T	999	11 11 11 11 11 11 11 11	48	0	0	21	27	0	0	41	24	0	0	34	28	0	0	30	29	0	0	33	28	0	0	37	32	0	0	31	36	0	0	36	32
chr19	32053143	T	G	999	11 11 11 11 11 11 11 11	24	0	0	17	10	0	0	23	18	0	0	16	9	0	0	18	8	0	0	22	19	0	0	17	12	0	0	10	14	0	0	14	23	merge_repeat	trfMask	chromOut	simple
chr19	32086557	C	G	999	11 11 11 11 11 11 11 11	35	0	0	23	26	0	0	30	41	0	0	17	30	0	0	31	23	0	0	21	23	0	0	30	24	0	0	10	25	0	0	18	26	merge_repeat		chromOut		nested
chr19	34921978	C	G	999	11 11 11 11 11 11 11 11	46	0	0	25	21	0	0	36	25	0	0	32	27	0	0	35	44	0	0	33	29	0	0	28	40	0	0	28	26	0	0	33	24
chr19	35539022	T	C	999	11 11 11 11 11 11 11 11	32	0	0	19	14	0	0	18	26	0	0	12	20	0	0	31	29	0	0	34	22	0	0	23	28	0	0	22	13	0	0	15	20
chr19	37069106	A	G	999	11 11 11 11 11 11 11 11	54	0	0	22	34	0	0	27	39	0	0	37	31	0	0	38	43	0	0	29	49	0	0	31	40	0	0	20	47	0	0	21	33
chr19	37176100	T	G	999	11 11 11 11 11 11 11 11	21	0	0	14	7	0	0	21	11	0	0	22	15	0	0	19	13	0	0	26	6	0	0	19	12	0	0	15	10	0	0	14	10	merge_repeat		chromOut
chr19	37712845	C	T	999	11 11 11 11 11 11 11 11	43	0	0	28	37	0	0	32	31	0	0	34	39	0	0	28	32	0	0	24	27	0	0	29	31	0	0	18	25	0	0	33	29	merge_repeat		chromOut
chr19	37712846	T	C	999	11 11 11 11 11 11 11 11	43	0	0	28	37	0	0	32	31	0	0	34	39	0	0	28	32	0	0	24	27	0	0	29	31	0	0	18	25	0	0	33	29	merge_repeat		chromOut
chr19	38423475	C	A	999	11 11 11 11 11 11 11 11	21	0	0	11	18	0	0	16	5	0	0	15	7	0	0	27	6	0	0	17	8	0	0	11	12	0	0	16	7	0	0	18	15
chr19	38510333	A	G	999	11 11 11 11 11 11 11 11	46	0	0	28	18	0	0	43	18	0	0	32	29	0	0	32	31	0	0	35	26	0	0	29	29	0	0	30	28	0	0	33	27	merge_repeat		chromOut
chr19	38929119	G	T	999	11 11 11 11 11 11 11 11	25	0	0	17	18	0	0	18	19	0	0	15	17	0	0	27	23	0	0	15	14	0	0	16	16	0	0	8	17	0	0	14	16	merge_repeat		chromOut
chr19	39257416	A	C	947	11 11 11 11 11 11 11 11	25	1	0	2	29	0	0	3	22	0	0	5	29	1	0	6	42	1	0	2	41	1	0	1	34	1	0	3	25	1	0	1	25	merge_repeat		chromOut	simple	nested
chr19	39257528	C	A	999	11 11 11 11 11 11 11 11	176	0	0	71	175	0	0	53	156	2	0	64	147	0	0	44	149	0	0	45	170	1	1	45	129	0	0	72	137	0	0	60	152	merge_repeat		chromOut	simple	nested
chr19	39260364	G	C	999	11 11 11 11 11 11 11 11	71	1	1	54	33	4	1	61	39	2	1	55	38	0	2	70	22	0	1	55	27	1	0	45	25	1	1	54	43	3	0	41	36	merge_repeat		chromOut	simple	nested
chr19	39260368	A	C	999	11 11 11 11 11 11 11 11	64	0	1	52	33	2	0	58	40	1	1	54	39	0	1	62	23	0	0	50	27	1	0	38	25	1	0	48	44	1	1	39	35	merge_repeat		chromOut	simple	nested
chr19	39260371	C	T	999	11 11 11 11 11 11 11 11	66	3	1	49	33	4	1	57	39	1	1	53	39	0	1	63	22	0	0	50	27	1	0	39	26	1	1	47	43	3	0	36	35	merge_repeat		chromOut	simple	nested
chr19	39284097	A	C	999	11 11 11 11 11 11 11 11	20	0	0	7	16	1	0	7	15	0	0	15	23	0	0	10	30	0	0	9	20	0	0	4	16	0	0	3	22	0	0	11	19	merge_repeat		chromOut
chr19	40973156	A	C	999	11 11 11 11 11 11 11 11	35	0	0	17	18	0	0	18	21	0	0	14	21	0	0	24	22	0	0	33	29	0	0	28	25	0	0	21	20	0	0	17	24	merge_repeat	trfMask	chromOut	simple	nested
chr19	42711933	A	C	999	11 11 11 11 11 11 11 11	56	0	0	40	28	0	0	39	28	0	0	23	35	0	0	39	40	0	0	34	35	0	0	46	30	0	0	25	40	0	0	30	26
chr19	43785652	G	T	999	11 11 11 11 11 11 11 11	46	0	0	29	32	0	0	36	20	0	0	27	19	0	0	33	25	0	0	25	27	0	0	28	24	0	0	24	25	0	0	23	24
chr19	44659659	A	G	999	11 11 11 11 11 11 11 11	32	0	0	24	29	0	0	17	15	0	0	18	22	0	0	37	21	0	0	32	24	0	0	30	15	0	0	23	17	0	0	23	22
chr19	46021130	C	G	999	11 11 11 11 11 11 11 11	30	0	0	13	17	0	0	12	25	0	0	16	26	0	0	19	15	0	0	23	25	0	0	15	25	1	0	15	28	0	0	17	32	merge_repeat	trfMask	chromOut	simple	nested
chr19	46771156	T	A	999	11 11 11 11 11 11 11 11	48	0	0	19	29	0	0	23	34	0	0	23	39	0	0	37	27	0	1	29	26	0	0	34	18	0	0	27	24	0	0	31	23	merge_repeat		chromOut
chr19	48708967	T	G	999	11 11 11 11 11 11 11 11	52	0	0	32	32	0	0	40	36	0	0	22	30	0	0	40	34	0	0	31	39	0	0	30	30	0	0	35	26	0	0	36	23
chr19	49394541	T	C	999	11 11 11 11 11 11 11 11	43	0	0	28	37	0	0	31	18	0	0	26	24	0	0	36	35	0	0	25	22	0	0	25	25	0	0	36	22	0	0	27	16	merge_repeat		chromOut
chr19	50032313	C	T	999	11 11 11 11 11 11 11 11	54	0	0	23	32	0	0	35	51	0	0	30	38	0	0	42	29	0	0	38	33	0	0	28	41	0	0	26	28	0	0	27	34	merge_repeat		chromOut
chr19	50032338	T	C	999	11 11 11 11 11 11 11 11	52	0	0	27	33	0	0	33	46	0	0	34	38	0	0	46	28	0	0	35	36	0	0	20	38	0	0	24	28	0	0	25	32	merge_repeat		chromOut
chr19	50032527	A	T	999	11 11 11 11 11 11 11 11	52	0	0	22	41	0	0	11	44	0	0	27	31	0	0	29	41	0	0	30	41	0	0	30	36	0	0	19	39	0	0	19	33
chr19	50032559	G	C	999	11 11 11 11 11 11 11 11	45	0	0	23	35	0	0	18	41	0	0	21	33	0	0	31	38	0	0	30	40	0	0	30	35	0	0	15	33	0	0	15	30
chr19	50032588	G	T	999	11 11 11 11 11 11 11 11	42	0	0	24	30	0	0	24	39	0	0	24	37	0	0	26	43	0	0	26	41	1	0	37	29	0	0	12	30	0	0	17	31
chr19	50032618	G	A	999	11 11 11 11 11 11 11 11	45	0	0	26	29	0	0	27	35	0	0	25	40	0	0	24	48	0	0	23	40	0	0	34	23	0	0	21	31	0	0	18	27
chr19	50032646	G	A	999	11 11 11 11 11 11 11 11	46	0	0	24	23	0	0	28	30	0	0	20	33	0	0	32	40	0	0	25	33	0	0	34	15	0	0	25	26	0	0	20	26
chr19	50732222	T	C	999	11 11 11 11 11 11 11 11	47	0	0	35	12	0	0	38	15	0	0	37	26	0	0	39	22	0	0	31	26	0	0	28	19	0	0	39	26	0	0	27	28	merge_repeat		chromOut
chr19	51779709	T	C	999	11 11 11 11 11 11 11 11	47	0	0	23	34	0	0	27	32	0	0	40	31	0	0	38	32	0	0	32	38	0	0	33	41	0	0	25	22	0	0	23	37	merge_repeat		chromOut		nested
chr19	51808285	T	C	999	11 11 11 11 11 11 11 11	24	0	0	14	25	0	0	4	29	0	0	10	24	0	0	11	20	0	0	5	25	0	0	7	17	0	0	6	23	0	0	9	20
chr19	52068802	C	T	999	11 11 11 11 11 11 11 11	57	0	0	34	39	0	0	35	25	0	0	38	39	0	0	33	27	0	0	45	27	0	0	28	29	0	0	37	25	0	0	35	34	merge_repeat		chromOut		nested
chr19	52359370	A	G	999	11 11 11 11 11 11 11 11	64	0	0	48	26	0	0	39	25	0	0	41	29	0	0	32	41	0	0	41	35	0	0	32	47	0	0	38	40	0	0	31	42
chr19	52596624	C	G	999	11 11 11 11 11 11 11 11	33	0	0	17	19	0	0	28	22	0	0	17	19	0	0	19	21	0	0	11	24	0	0	20	13	0	0	25	14	0	0	17	21
chr19	52646212	C	T	999	11 11 11 11 11 11 11 11	41	0	0	20	21	0	0	19	31	0	0	24	32	0	0	21	30	0	0	29	27	0	0	37	29	0	0	16	28	0	0	29	27
chr19	52646263	C	T	999	11 11 11 11 11 11 11 11	47	0	0	23	27	0	0	14	38	0	0	25	34	0	0	18	29	0	0	29	28	0	0	28	28	0	0	15	41	0	0	22	33
chr19	52646274	C	G	999	11 11 11 11 11 11 11 11	45	0	0	22	26	0	0	13	38	0	0	22	33	0	0	18	27	0	0	26	29	0	0	25	29	0	0	17	38	0	0	22	35
chr19	52810677	C	A	999	11 11 11 11 11 11 11 11	40	0	0	22	28	0	0	25	30	0	0	24	16	0	0	27	28	0	0	26	35	0	0	27	25	0	0	21	26	0	0	21	21	merge_repeat		chromOut		nested
chr19	53240163	A	T	999	11 11 11 11 11 11 11 11	47	0	0	20	27	0	0	22	36	0	0	32	34	0	0	22	37	1	0	27	39	0	0	25	26	0	0	35	30	0	0	29	22	merge_repeat		chromOut
chr19	53240164	G	A	999	11 11 11 11 11 11 11 11	47	0	0	20	27	0	0	22	36	0	0	32	34	0	0	22	37	0	0	27	39	1	0	24	26	0	1	35	29	0	0	29	22	merge_repeat		chromOut
chr19	53350589	C	A	999	11 11 11 11 11 11 11 11	20	0	0	17	5	0	0	11	16	0	0	10	13	0	0	22	12	1	0	16	12	0	0	14	10	0	0	8	12	0	0	13	8	merge_repeat		chromOut
chr19	53363226	G	A	999	11 11 11 11 11 11 11 11	52	0	0	24	29	0	0	21	37	0	0	21	35	0	0	28	36	0	0	30	40	0	0	24	32	0	0	25	27	0	0	20	33
chr19	53618895	G	T	999	11 11 11 11 11 11 11 11	21	1	0	5	17	1	0	7	20	0	0	4	18	0	0	7	24	0	0	4	28	0	0	6	15	0	0	4	20	0	0	7	17
chr19	54038812	A	G	999	11 11 11 11 11 11 11 11	21	0	0	12	9	0	0	18	14	0	0	17	15	0	0	17	16	0	0	26	14	0	0	20	7	0	0	20	13	0	0	22	13	merge_repeat		chromOut
chr19	54038816	A	G	999	11 11 11 11 11 11 11 11	22	0	0	13	9	0	0	20	13	0	0	18	14	0	0	17	17	0	0	27	16	0	0	21	6	0	0	20	13	0	0	21	14	merge_repeat		chromOut
chr19	54495293	T	G	999	11 11 11 11 11 11 11 11	48	0	0	25	25	0	0	35	26	0	0	30	32	0	1	26	28	0	0	34	20	1	0	23	28	0	0	22	26	1	0	31	16	merge_repeat	trfMask	chromOut	simple
chr19	54532945	G	T	999	11 11 11 11 11 11 11 11	27	0	0	13	14	0	0	17	25	0	0	15	27	0	0	27	18	0	0	22	37	0	0	19	21	0	0	24	28	0	0	18	38	merge_repeat		chromOut
chr19	54532972	C	A	999	11 11 11 11 11 11 11 11	34	0	0	17	17	0	0	16	22	0	0	22	32	0	0	21	24	0	0	28	38	0	0	18	23	0	0	25	29	0	0	11	35
chr19	54753175	G	C	999	11 11 11 11 11 11 11 11	27	0	0	13	14	0	0	29	22	0	0	22	21	0	0	19	35	0	0	22	27	0	0	23	18	0	0	23	24	0	0	14	30	merge_repeat		chromOut
chr19	54753178	G	C	999	11 11 11 11 11 11 11 11	27	0	0	13	14	0	0	30	23	0	0	22	21	0	0	19	35	0	0	22	27	0	0	24	18	0	0	23	24	0	0	14	30	merge_repeat		chromOut
chr19	54847119	G	A	999	11 11 11 11 11 11 11 11	46	0	0	30	21	0	1	29	16	0	0	26	21	0	0	38	29	0	0	46	27	0	0	25	24	0	0	34	18	0	0	27	26
chr19	54917920	C	A	999	11 11 11 11 11 11 11 11	20	0	0	14	7	0	0	15	9	0	0	12	10	0	0	18	11	0	0	24	9	0	0	9	15	0	0	18	5	0	0	13	7	merge_repeat	trfMask	chromOut	simple
chr19	56069530	A	G	999	11 11 11 11 11 11 11 11	24	0	0	11	21	0	0	19	22	0	0	17	13	0	0	20	23	0	0	15	20	0	0	14	12	0	0	11	13	0	0	13	22	merge_repeat		chromOut
chr19	56398494	G	C	999	11 11 11 11 11 11 11 11	20	0	0	4	16	0	0	3	30	0	0	6	27	0	0	3	21	0	0	1	31	0	0	4	24	0	0	2	29	0	0	1	24	merge_repeat		chromOut
chr19	56668166	G	C	999	11 11 11 11 11 11 11 11	49	0	0	27	22	0	0	41	28	0	0	33	26	0	0	50	31	0	0	39	23	0	0	32	25	0	0	39	33	0	0	31	19	merge_repeat		chromOut	simple	nested
chr19	58137155	A	T	999	11 11 11 11 11 11 11 11	26	0	0	18	17	0	0	15	18	0	0	20	18	0	0	28	17	0	0	19	20	0	0	25	10	0	0	16	15	0	0	15	11	merge_repeat	trfMask	chromOut	simple
chr19	58763538	A	C	999	11 11 11 11 11 11 11 11	38	0	0	21	17	0	0	29	22	0	0	24	29	0	0	29	27	0	0	16	41	0	0	23	27	0	0	22	29	0	0	15	23	merge_repeat		chromOut
chr19	59949072	T	C	999	11 11 11 11 11 11 11 11	22	0	0	15	13	0	0	14	8	0	0	14	9	0	0	23	7	0	0	16	7	0	0	20	10	0	0	14	9	0	0	17	13
chr19	60098342	G	C	999	11 11 11 11 11 11 11 11	45	0	0	21	24	0	0	29	32	0	0	25	30	0	0	33	25	0	0	34	24	0	0	23	28	0	0	21	25	0	0	22	25
chr19	60098343	C	A	999	11 11 11 11 11 11 11 11	45	0	0	21	24	0	0	29	32	0	1	25	29	0	0	33	25	0	0	34	24	0	0	23	28	0	0	20	25	0	2	22	25
chr19	60098344	A	G	999	11 11 11 11 11 11 11 11	45	0	0	21	24	0	0	29	32	0	1	25	30	0	0	33	25	0	0	34	24	0	0	23	28	0	0	21	25	0	2	22	25
chr19	60276254	G	T	999	11 11 11 11 11 11 11 11	23	0	0	16	13	0	0	15	15	0	0	18	11	0	0	17	10	0	0	17	15	0	0	13	11	0	0	15	13	0	0	12	11	merge_repeat		chromOut
chr19	60281664	T	G	999	11 11 11 11 11 11 11 11	21	0	0	15	8	0	0	16	7	0	0	15	9	0	1	15	12	0	0	15	14	0	0	14	7	0	0	10	12	0	0	16	15	merge_repeat		chromOut		nested
chr19	60445124	C	G	999	11 11 11 11 11 11 11 11	62	0	0	38	27	0	0	40	38	0	0	43	32	0	0	31	31	0	0	41	36	0	0	40	28	0	0	49	29	0	0	39	26	merge_repeat		chromOut
chr19	60458629	C	G	999	11 11 11 11 11 11 11 11	36	0	0	20	33	0	0	25	29	0	0	24	29	0	0	29	22	0	0	34	25	0	0	17	19	0	0	24	27	0	0	28	32
chr19	60496197	A	T	999	11 11 11 11 11 11 11 11	48	0	0	36	31	0	0	31	19	0	0	33	30	0	0	33	37	0	0	25	23	0	0	24	32	0	0	25	27	0	0	31	29