chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr18	3117795	A	G,C	999	12 12 12 12 12 12 12 12	47	0	0	60	8	0	0	61	5	0	1	70	5	1	0	42	9	0	0	52	11	0	0	41	6	0	0	44	7	0	0	61	6	merge_repeat			simple		segmentDup
chr18	3117819	G	C	999	11 11 11 11 11 11 11 11	36	0	1	44	7	0	0	40	3	0	0	50	5	0	1	28	7	0	1	40	9	0	1	35	6	0	1	39	5	0	0	41	3	merge_repeat			simple		segmentDup
chr18	5580299	G	C	999	11 11 11 11 11 11 11 11	32	0	0	9	29	0	0	14	25	0	0	7	27	0	0	12	25	0	0	16	32	0	0	12	20	0	0	14	34	0	1	9	33	merge_repeat		chromOut		nested
chr18	5580300	A	G	999	11 11 11 11 11 11 11 11	32	0	0	9	29	0	0	14	25	0	0	7	27	0	0	12	25	0	0	16	32	0	0	12	20	0	0	14	34	0	0	9	34	merge_repeat		chromOut		nested
chr18	6326936	C	A	999	11 11 11 11 11 11 11 11	35	0	0	25	16	0	0	24	38	0	0	23	22	0	0	38	23	0	0	27	24	0	0	20	21	0	0	25	30	0	0	18	17	merge_repeat		chromOut		nested
chr18	10553927	C	A	999	11 11 11 11 11 11 11 11	38	0	0	14	24	0	0	27	40	0	0	31	23	0	0	26	32	0	0	31	26	0	0	26	30	0	0	21	31	0	0	12	29
chr18	10955540	G	T	999	11 11 11 11 11 11 11 11	43	0	0	38	23	0	0	24	42	0	0	21	26	0	0	24	35	0	0	22	30	0	0	21	32	0	0	28	32	0	0	17	26
chr18	10955583	G	T	999	11 11 11 11 11 11 11 11	42	0	0	46	21	0	0	35	31	0	0	26	22	0	0	27	38	0	0	30	26	0	0	28	26	0	0	30	16	0	0	22	20
chr18	11041937	C	A	999	11 11 11 11 11 11 11 11	47	0	0	21	28	0	1	24	27	0	0	28	19	0	0	41	37	0	0	33	20	0	0	30	18	0	0	39	26	0	0	17	30
chr18	11051990	C	G	999	11 11 11 11 11 11 11 11	28	0	0	20	10	0	0	26	21	0	0	13	15	0	0	27	15	0	0	22	25	0	0	23	15	0	0	16	15	0	0	19	15
chr18	11051991	T	G	999	11 11 11 11 11 11 11 11	28	0	0	19	10	0	0	26	21	0	0	13	15	0	0	27	18	0	0	22	24	0	0	23	15	0	0	16	15	0	0	19	15
chr18	11094666	G	T	999	11 11 11 11 11 11 11 11	20	0	0	19	9	0	0	25	14	0	0	18	12	0	0	33	23	0	0	24	10	0	0	19	10	0	0	14	6	0	0	11	11	merge_repeat		chromOut
chr18	11094720	A	G	999	11 11 11 11 11 11 11 11	26	0	0	18	10	0	0	29	17	0	0	20	8	0	0	34	24	0	0	25	6	0	0	27	10	0	0	24	6	0	0	17	9	merge_repeat		chromOut
chr18	11618267	C	A	999	11 11 11 11 11 11 11 11	23	0	0	14	12	0	0	11	12	0	0	20	10	0	0	17	10	0	0	23	7	0	0	21	15	0	0	17	10	0	0	14	11	merge_repeat		chromOut
chr18	12280361	A	T	999	11 11 11 11 11 11 11 11	51	0	0	29	24	0	0	22	47	0	0	30	37	0	0	27	24	0	0	30	22	0	0	32	33	0	0	33	36	0	0	35	24
chr18	13866654	T	C	999	11 11 11 11 11 11 11 11	36	0	0	31	12	0	0	23	14	0	0	25	11	0	0	28	15	0	0	42	13	0	0	34	14	0	0	30	19	0	0	30	14	merge_repeat		chromOut
chr18	13921330	A	C	999	11 11 11 11 11 11 11 11	41	0	0	27	22	0	0	22	24	0	0	23	18	0	0	23	18	0	0	22	23	0	0	25	22	0	0	36	15	0	0	23	19
chr18	13929382	T	C	999	11 11 11 11 11 11 11 11	27	0	0	6	21	0	0	10	24	0	0	10	23	1	0	7	25	0	0	14	30	0	0	9	24	0	0	10	26	0	0	8	23	merge_repeat		chromOut
chr18	13929402	G	C	999	11 11 11 11 11 11 11 11	25	0	0	6	19	0	0	11	23	0	0	11	22	0	0	12	19	0	0	15	25	0	0	9	25	0	0	8	23	0	0	11	25	merge_repeat		chromOut
chr18	14627640	G	A	999	11 11 11 11 11 11 11 11	29	0	0	9	22	0	0	17	21	0	0	14	25	0	0	14	26	0	0	17	24	0	0	11	23	0	0	11	18	0	0	14	17
chr18	14629380	A	G	999	11 11 11 11 11 11 11 11	28	0	0	19	27	0	0	15	17	0	0	14	24	0	0	17	33	0	0	20	29	0	0	14	25	0	0	14	14	0	0	17	20	merge_repeat		chromOut
chr18	14684164	T	C	999	11 11 11 11 11 11 11 11	38	0	0	17	33	0	0	16	35	0	0	25	27	0	0	18	37	0	0	25	42	0	0	19	19	0	0	18	26	0	0	20	35	merge_repeat		chromOut
chr18	14948374	A	G	999	11 11 11 11 11 11 11 11	49	0	0	22	33	0	0	23	27	0	0	21	31	0	0	31	42	0	0	25	24	0	0	25	25	0	0	36	29	0	0	36	23
chr18	15159405	G	T	999	11 11 11 11 11 11 11 11	24	0	0	17	11	0	0	13	16	0	0	15	12	0	1	12	17	0	0	10	17	0	0	16	24	0	0	11	13	0	1	17	11	merge_repeat		chromOut
chr18	15159411	G	T	999	11 11 11 11 11 11 11 11	23	0	0	17	11	0	0	13	16	0	0	12	11	0	0	10	16	0	0	8	18	0	0	17	22	0	0	14	13	0	1	17	10	merge_repeat		chromOut
chr18	16134051	A	C	999	11 11 11 11 11 11 11 11	40	0	0	25	30	0	0	19	25	0	0	25	16	0	0	31	24	0	0	12	28	0	0	30	20	0	0	24	32	0	0	21	25	merge_repeat		chromOut
chr18	16298895	C	A	999	11 11 11 11 11 11 11 11	24	0	1	10	21	0	0	15	13	0	0	16	11	0	0	20	15	0	0	21	10	0	0	17	13	0	1	11	19	0	0	14	10	merge_repeat		chromOut
chr18	16322396	G	T	999	11 11 11 11 11 11 11 11	25	0	0	29	9	0	0	20	8	0	0	23	18	0	0	30	10	0	0	38	10	0	0	26	7	0	0	24	11	0	0	21	4	merge_repeat		chromOut		nested
chr18	16322421	A	G	999	11 11 11 11 11 11 11 11	29	0	0	27	8	0	0	27	9	0	0	27	12	0	0	34	14	0	0	36	11	0	0	24	7	0	0	24	7	0	0	23	6	merge_repeat		chromOut		nested
chr18	18644584	C	T	999	11 11 11 11 11 11 11 11	59	0	0	42	25	0	0	36	33	0	0	28	31	0	0	42	40	0	0	30	37	0	0	36	26	0	0	45	34	0	0	41	34
chr18	18994106	A	G	999	11 11 11 11 11 11 11 11	36	0	0	21	15	0	0	30	20	0	0	33	10	0	0	34	17	0	0	46	18	0	0	28	13	0	0	33	10	0	0	27	14	merge_repeat		chromOut		nested
chr18	19369068	G	C	999	11 11 11 11 11 11 11 11	20	0	0	9	19	0	0	7	13	0	0	11	11	0	0	18	16	0	0	11	13	0	0	10	14	0	0	10	12	0	0	11	17	merge_repeat		chromOut		nested
chr18	19369075	G	C	999	11 11 11 11 11 11 11 11	24	0	0	10	20	0	0	7	17	0	0	12	13	0	0	23	16	0	0	14	14	0	0	10	16	0	0	13	15	0	0	12	17	merge_repeat		chromOut		nested
chr18	19369094	G	A	999	11 11 11 11 11 11 11 11	31	0	0	17	22	0	0	9	22	0	0	15	16	0	0	27	20	0	0	15	19	0	0	16	19	0	0	22	20	0	0	17	19	merge_repeat		chromOut		nested
chr18	19369103	G	A	999	11 11 11 11 11 11 11 11	35	0	0	20	25	0	0	11	24	0	0	18	17	0	0	28	20	0	0	17	21	0	0	22	18	0	0	26	22	0	0	19	20	merge_repeat		chromOut		nested
chr18	19369109	A	C	999	11 11 11 11 11 11 11 11	37	0	0	21	29	0	0	11	26	0	0	19	18	0	0	28	23	0	0	19	22	0	0	21	21	0	0	27	25	0	0	21	22	merge_repeat		chromOut		nested
chr18	21225396	T	C	999	11 11 11 11 11 11 11 11	24	0	0	22	13	0	0	19	11	0	0	23	10	0	0	15	14	0	0	27	11	0	0	25	8	0	0	11	13	0	0	25	9	merge_repeat			simple
chr18	21452711	T	A	999	11 11 11 11 11 11 11 11	47	0	0	33	26	0	0	28	48	0	0	23	34	0	0	31	21	0	0	25	22	0	0	23	38	0	0	25	32	1	0	26	25
chr18	24364956	G	A	999	11 11 11 11 11 11 11 11	25	0	0	22	10	0	0	28	11	0	0	22	11	0	0	33	14	0	0	23	12	0	0	28	12	0	0	25	9	0	0	19	6	merge_repeat	trfMask	chromOut	simple
chr18	24364960	G	A	999	11 11 11 11 11 11 11 11	24	0	0	24	10	0	0	28	13	0	0	22	11	0	0	33	14	0	0	23	12	0	0	28	12	0	0	25	9	0	0	18	6	merge_repeat	trfMask	chromOut	simple
chr18	25513818	T	G	999	11 11 11 11 11 11 11 11	48	0	0	29	28	0	0	36	37	0	0	28	34	0	0	34	31	0	0	31	35	0	0	24	26	0	0	25	31	0	0	27	21
chr18	25788324	C	A	999	11 11 11 11 11 11 11 11	27	0	0	7	25	0	0	6	21	0	0	12	32	0	0	14	23	0	0	11	26	0	0	9	22	0	0	9	20	0	0	9	21
chr18	25788325	C	A	999	11 11 11 11 11 11 11 11	27	0	0	7	25	0	0	6	21	0	0	12	32	0	0	14	23	0	0	11	26	0	0	9	22	0	0	9	20	0	0	9	20
chr18	25788350	C	G	999	11 11 11 11 11 11 11 11	22	0	0	7	15	0	0	12	17	0	0	13	24	0	0	13	23	0	0	12	24	0	0	8	21	0	0	13	17	0	0	9	21
chr18	25909815	G	C	999	11 11 11 11 11 11 11 11	47	0	0	26	21	0	0	26	27	0	0	28	31	0	0	37	37	0	0	27	24	0	0	28	26	0	0	26	33	0	0	32	31
chr18	25916109	A	G	999	11 11 11 11 11 11 11 11	52	0	0	27	29	0	0	21	31	0	0	24	30	0	0	33	48	0	0	26	35	0	0	25	33	0	0	23	29	0	0	25	28
chr18	26050999	A	G	999	11 11 11 11 11 11 11 11	45	0	0	35	25	0	0	25	20	0	0	25	31	0	0	36	38	0	0	31	26	0	0	33	24	0	0	36	28	0	0	29	31	merge_repeat		chromOut
chr18	26623041	A	C	999	11 11 11 11 11 11 11 11	60	0	0	43	39	0	0	41	35	0	0	34	41	0	0	30	30	0	0	29	45	0	0	41	40	0	0	34	42	0	0	35	35
chr18	27498983	T	C	999	11 11 11 11 11 11 11 11	56	0	0	31	38	0	0	40	40	0	0	26	30	0	0	40	33	0	0	39	31	0	0	40	38	0	0	29	34	0	0	33	47	merge_repeat				nested
chr18	28478320	G	A	999	11 11 11 11 11 11 11 11	26	0	0	24	8	0	0	17	10	0	0	17	9	0	0	16	13	0	0	32	6	0	0	27	7	0	0	24	9	0	0	22	10	merge_repeat	trfMask	chromOut	simple
chr18	28482760	A	C	999	11 11 11 11 11 11 11 11	29	0	0	10	21	0	0	10	32	0	0	12	26	0	0	16	32	0	0	10	27	0	0	10	24	0	0	9	25	0	0	5	24	merge_repeat		chromOut
chr18	29910332	G	T	999	11 11 11 11 11 11 11 11	20	0	0	4	22	0	0	2	27	0	0	5	18	1	0	5	25	0	0	6	22	0	0	2	24	0	0	3	24	0	0	4	16
chr18	30356994	T	G	999	11 11 11 11 11 11 11 11	33	0	0	26	21	0	0	23	22	0	0	14	23	0	0	32	27	0	0	27	18	0	0	20	24	0	0	21	23	0	0	22	11	merge_repeat		chromOut
chr18	30461120	A	T	999	11 11 11 11 11 11 11 11	53	0	0	39	29	0	0	40	22	0	0	43	26	0	0	26	27	0	0	37	42	0	0	37	32	0	0	25	28	0	0	27	32	merge_repeat		chromOut
chr18	30526386	G	T	999	11 11 11 11 11 11 11 11	32	0	0	20	16	0	0	20	12	0	0	22	19	0	0	24	24	0	0	27	20	0	0	25	24	0	0	26	33	0	0	22	18	merge_repeat	trfMask	chromOut	simple
chr18	30632368	C	G	999	11 11 11 11 11 11 11 11	49	0	0	36	29	0	0	38	23	0	0	31	26	0	0	38	36	0	0	39	17	0	0	33	18	0	0	30	23	0	0	26	23
chr18	33660420	G	A	999	11 11 11 11 11 11 11 11	30	0	0	10	20	0	0	21	23	0	0	14	23	0	0	22	28	0	0	24	27	0	0	16	27	0	0	13	22	0	0	16	25	merge_repeat		chromOut
chr18	33660469	A	G	999	11 11 11 11 11 11 11 11	38	0	0	17	21	0	0	23	25	0	0	18	26	0	0	20	24	0	0	22	27	0	0	12	27	0	0	13	30	0	0	20	27	merge_repeat		chromOut
chr18	33660486	C	T	999	11 11 11 11 11 11 11 11	42	0	0	19	23	0	0	24	28	0	0	18	31	0	0	19	23	0	0	23	28	0	0	14	30	0	0	14	36	0	0	21	26	merge_repeat		chromOut
chr18	33660532	C	T	999	11 11 11 11 11 11 11 11	35	0	0	20	15	1	0	21	36	0	0	15	32	0	0	18	24	0	0	22	26	0	0	18	29	0	0	20	33	0	0	23	24	merge_repeat		chromOut
chr18	35609747	T	C	999	11 11 11 11 11 11 11 11	40	0	0	29	20	0	0	21	31	0	0	21	21	0	0	18	35	0	0	30	29	0	0	29	21	0	0	24	16	0	0	31	22
chr18	37058240	A	T	999	11 11 11 11 11 11 11 11	55	0	1	32	39	0	1	20	39	0	0	33	35	0	1	26	28	0	0	27	30	0	0	34	28	0	0	23	32	0	0	35	32	merge_repeat		chromOut		nested
chr18	37484499	G	C	999	11 11 11 11 11 11 11 11	52	0	0	35	27	0	0	33	29	0	0	32	40	0	0	32	20	0	0	33	34	0	0	33	39	0	0	35	22	0	0	36	36
chr18	40157749	A	C	999	11 11 11 11 11 11 11 11	35	0	0	28	14	0	0	30	20	0	0	21	28	0	0	22	24	0	1	26	23	0	0	24	14	0	0	29	18	0	0	21	14	merge_repeat	trfMask	chromOut	simple
chr18	41414834	T	G	999	11 11 11 11 11 11 11 11	42	0	0	37	26	0	0	23	24	0	0	31	23	0	0	32	33	0	1	28	39	0	0	21	21	0	0	26	20	0	0	25	21	merge_repeat		chromOut		nested
chr18	41499983	A	G	999	11 11 11 11 11 11 11 11	41	0	0	27	21	0	0	32	22	0	0	30	15	0	0	29	30	0	0	22	19	0	0	37	19	0	0	26	20	0	0	31	22
chr18	41499988	A	C	999	11 11 11 11 11 11 11 11	42	0	0	28	21	0	0	33	22	0	0	32	15	0	0	30	30	0	0	24	18	0	0	37	19	0	0	25	21	0	0	32	24
chr18	41500005	A	T	999	11 11 11 11 11 11 11 11	42	0	0	30	19	0	0	35	17	0	0	29	18	0	0	25	29	0	0	23	20	0	0	35	23	0	0	22	20	0	0	32	26
chr18	41500007	A	C	999	11 11 11 11 11 11 11 11	42	0	0	30	19	0	0	34	18	0	0	29	18	0	0	25	29	0	0	23	20	0	0	36	23	0	0	22	20	0	0	32	26
chr18	41500009	A	T	999	11 11 11 11 11 11 11 11	42	0	0	30	20	0	0	33	18	0	0	29	18	0	0	25	29	0	0	22	20	0	0	36	22	0	0	23	20	0	0	31	26
chr18	42857631	T	C	999	11 11 11 11 11 11 11 11	55	0	0	39	21	0	0	38	33	0	0	30	25	0	0	31	39	0	0	36	27	0	0	28	27	0	0	32	35	0	0	39	26
chr18	42857675	T	C	999	11 11 11 11 11 11 11 11	55	0	0	44	16	0	0	40	31	0	0	33	23	0	0	40	34	0	0	37	26	0	0	35	20	0	0	41	32	0	0	41	23
chr18	42857849	C	T	999	11 11 11 11 11 11 11 11	49	0	0	26	43	0	0	20	46	0	0	24	31	0	0	31	36	0	0	35	34	0	0	27	36	0	0	28	34	0	0	22	27
chr18	43114305	A	G	999	11 11 11 11 11 11 11 11	32	0	0	16	22	0	0	25	23	0	0	17	16	0	0	17	15	0	0	20	15	0	0	19	15	0	0	20	23	0	0	13	24	merge_repeat		chromOut		nested
chr18	43114308	G	A	999	11 11 11 11 11 11 11 11	31	0	0	16	22	0	0	25	23	0	0	18	16	0	0	16	15	0	0	20	15	0	0	19	16	0	0	20	24	0	0	13	25	merge_repeat		chromOut		nested
chr18	43114322	G	T	999	11 11 11 11 11 11 11 11	39	0	0	20	22	0	0	30	24	0	0	19	23	0	0	21	18	0	0	21	18	0	0	21	19	0	0	21	24	0	0	16	27	merge_repeat		chromOut		nested
chr18	43805119	A	T	999	11 11 11 11 11 11 11 11	57	0	0	31	26	0	0	34	31	0	0	31	32	0	0	49	40	0	0	36	25	0	0	36	40	0	0	32	34	0	0	42	24
chr18	43835581	G	T	999	11 11 11 11 11 11 11 11	30	0	0	21	18	0	0	19	17	0	0	25	20	0	0	28	15	0	0	30	12	0	0	12	18	0	0	18	20	0	0	20	17	merge_repeat		chromOut
chr18	43835582	G	T	999	11 11 11 11 11 11 11 11	30	0	0	21	18	0	0	19	17	0	0	25	20	0	0	28	15	0	0	30	12	0	0	12	18	0	0	18	20	0	0	19	17	merge_repeat		chromOut
chr18	48411162	A	C	999	11 11 11 11 11 11 11 11	50	0	0	30	41	0	0	26	27	0	0	31	34	0	0	28	35	0	0	32	35	0	0	26	24	0	0	34	39	0	0	28	37
chr18	49300599	T	A	999	11 11 11 11 11 11 11 11	35	0	0	20	15	0	0	39	15	0	0	37	24	0	0	24	29	0	0	36	16	0	0	33	22	0	0	32	23	0	0	36	26	merge_repeat		chromOut
chr18	49446540	T	A	999	11 11 11 11 11 11 11 11	37	0	0	26	23	0	0	37	25	0	0	28	32	0	0	26	38	0	0	13	36	0	0	12	25	0	0	22	30	0	0	28	31	merge_repeat	trfMask		simple
chr18	49934757	G	C	999	11 11 11 11 11 11 11 11	64	0	0	29	59	0	0	44	47	0	0	37	45	0	0	38	48	0	0	32	32	0	0	39	37	0	0	38	39	0	0	41	38	merge_repeat			simple
chr18	50030826	G	A	999	11 11 11 11 11 11 11 11	45	0	0	29	28	0	0	41	28	0	0	18	27	0	0	30	42	0	0	28	23	0	0	38	32	0	0	32	25	0	0	21	38
chr18	50156664	A	G	999	11 11 11 11 11 11 11 11	24	0	0	18	12	0	0	12	13	0	0	24	17	0	0	25	30	0	0	13	11	0	0	16	13	0	0	12	15	0	0	14	13	merge_repeat		chromOut
chr18	50220345	T	A	999	11 11 11 11 11 11 11 11	30	0	0	14	16	0	0	24	27	0	0	30	22	0	0	34	22	0	0	21	22	0	0	18	15	0	0	24	19	0	0	32	16
chr18	50526896	T	G	999	11 11 11 11 11 11 11 11	46	0	0	27	41	0	0	27	39	0	0	19	33	0	0	36	27	0	0	34	29	0	0	28	24	0	0	21	25	0	0	26	22	merge_repeat	trfMask	chromOut	simple
chr18	50609003	A	G	999	11 11 11 11 11 11 11 11	57	0	0	39	36	0	0	32	33	0	0	45	27	0	0	30	27	0	0	27	36	0	0	35	24	0	0	38	34	0	0	36	27	merge_repeat		chromOut
chr18	51722504	T	G	999	11 11 11 11 11 11 11 11	21	0	0	23	7	0	0	16	5	0	0	15	8	0	0	20	11	0	0	20	17	0	0	15	15	0	0	17	20	0	0	10	12	merge_repeat	trfMask	chromOut	simple	nested
chr18	53338198	G	A	999	11 11 11 11 11 11 11 11	57	0	0	30	27	0	0	37	36	0	0	35	29	0	0	42	36	0	0	30	33	0	1	31	25	1	0	40	36	0	0	31	39	merge_repeat		chromOut
chr18	53464777	A	G	999	11 11 11 11 11 11 11 11	30	0	0	26	19	0	0	23	23	0	0	28	26	0	0	33	20	0	0	29	19	0	0	17	13	0	0	27	18	0	0	19	12	merge_repeat		chromOut
chr18	55789618	A	G	999	11 11 11 11 11 11 11 11	47	0	0	28	34	0	0	30	28	0	0	24	23	0	0	27	43	0	0	48	30	0	0	34	36	0	0	34	27	0	0	36	30	merge_repeat		chromOut		nested
chr18	56840942	A	G	999	11 11 11 11 11 11 11 11	43	0	1	32	23	0	0	34	26	0	0	25	21	0	0	36	29	0	0	25	34	0	0	32	30	0	2	28	35	0	0	21	22	merge_repeat		chromOut
chr18	58280828	T	G	999	11 11 11 11 11 11 11 11	33	0	0	29	11	0	0	27	14	0	0	21	17	0	0	35	18	0	0	33	9	0	0	30	13	0	0	25	8	0	0	25	10	merge_repeat		chromOut
chr18	59552979	G	T	999	11 11 11 11 11 11 11 11	29	0	0	12	28	0	0	13	22	0	0	16	17	0	0	17	20	0	0	23	21	0	0	12	19	0	0	20	25	0	0	10	19	merge_repeat		chromOut		nested
chr18	59777594	C	T	999	11 11 11 11 11 11 11 11	34	0	0	29	7	0	0	29	12	0	0	26	20	0	0	31	19	0	0	32	17	0	0	32	25	0	0	24	10	0	0	40	24	merge_repeat		chromOut		nested
chr18	60256338	T	G	999	11 11 11 11 11 11 11 11	43	0	0	23	24	0	0	28	24	0	1	22	31	0	0	26	38	0	0	34	25	0	0	19	24	0	0	26	22	0	0	31	26	merge_repeat		chromOut		nested	segmentDup
chr18	61238126	T	C	999	11 11 11 11 11 11 11 11	47	0	0	26	27	0	0	25	30	0	0	32	29	0	0	32	30	0	0	31	36	0	0	24	27	0	0	33	26	0	0	21	26	merge_repeat		chromOut		nested
chr18	61861594	T	C	999	11 11 11 11 11 11 11 11	50	0	0	35	31	0	0	29	35	0	0	33	39	0	0	37	33	0	0	32	38	0	0	28	27	0	0	19	32	0	0	27	23	merge_repeat		chromOut		nested
chr18	62077366	T	G	999	11 11 11 11 11 11 11 11	39	0	0	16	25	0	0	14	25	0	0	22	23	0	0	21	29	0	0	18	25	0	0	16	30	0	0	16	25	0	0	15	25
chr18	62077384	C	G	999	11 11 11 11 11 11 11 11	37	0	0	15	24	0	0	14	26	0	0	19	25	0	0	19	29	0	0	22	20	0	0	16	24	0	0	15	25	0	0	16	21	merge_repeat		chromOut	simple
chr18	62077401	G	A	999	11 11 11 11 11 11 11 11	31	0	0	16	15	0	0	12	19	0	0	19	19	0	0	21	21	0	0	23	18	0	0	17	16	0	0	17	23	0	0	15	17	merge_repeat	trfMask	chromOut	simple
chr18	62077404	G	A	999	11 11 11 11 11 11 11 11	31	0	0	16	15	0	0	12	19	0	0	17	19	0	0	21	20	0	0	23	18	0	0	17	15	0	0	17	23	0	0	15	17	merge_repeat	trfMask	chromOut	simple
chr18	62077418	G	A	999	11 11 11 11 11 11 11 11	25	0	0	12	14	0	0	11	14	0	0	16	18	0	0	20	18	0	0	23	19	0	0	17	14	0	0	14	20	0	0	14	16	merge_repeat	trfMask	chromOut	simple
chr18	62077425	G	A	999	11 11 11 11 11 11 11 11	23	0	0	9	14	0	0	11	18	0	0	17	18	0	0	20	16	0	0	26	20	0	0	17	17	0	0	11	19	0	0	16	13	merge_repeat	trfMask	chromOut	simple
chr18	62092780	T	C	999	11 11 11 11 11 11 11 11	38	0	0	6	36	0	0	8	37	0	0	7	31	0	0	10	39	0	0	13	37	0	0	12	36	0	0	12	32	0	0	7	38	merge_repeat				nested
chr18	62779984	A	C	999	11 11 11 11 11 11 11 11	37	0	0	25	24	0	1	24	29	0	1	21	24	0	1	21	22	0	0	27	14	0	0	22	26	0	0	19	18	0	0	18	25	merge_repeat		chromOut
chr18	63173445	T	A	999	11 11 11 11 11 11 11 11	22	0	1	12	25	0	0	4	19	0	0	6	26	0	0	11	30	0	0	12	33	0	0	9	32	0	0	5	17	0	0	7	33	merge_repeat		chromOut		nested
chr18	63725970	C	G	999	11 11 11 11 11 11 11 11	47	0	0	28	19	0	0	32	28	0	0	29	34	0	0	38	29	0	0	27	25	0	0	27	28	0	0	31	25	0	0	31	28	merge_repeat				nested
chr18	63925933	G	T	999	11 11 11 11 11 11 11 11	50	0	0	26	24	0	0	33	25	0	0	31	22	0	0	37	36	0	0	33	35	0	0	32	25	0	0	33	32	0	0	35	28
chr18	64457132	C	T	999	11 11 11 11 11 11 11 11	59	0	0	31	33	0	0	33	34	0	0	29	30	0	0	26	42	0	0	29	33	0	0	36	35	0	0	36	30	0	0	29	30
chr18	64488336	C	G	999	11 11 11 11 11 11 11 11	50	0	0	26	24	0	0	26	32	0	0	19	33	0	0	35	35	0	0	30	30	0	0	25	31	0	0	24	32	0	0	29	41
chr18	66201630	C	A	999	11 11 11 11 11 11 11 11	21	0	0	15	17	0	0	18	14	0	0	7	26	0	0	20	13	0	0	21	35	0	0	15	17	0	0	8	20	0	0	15	6	merge_repeat		chromOut
chr18	67329633	T	C	999	11 11 11 11 11 11 11 11	26	0	0	15	11	0	0	24	11	0	0	17	13	0	0	26	16	0	0	27	19	0	0	19	11	0	0	19	12	0	0	17	22
chr18	69612458	A	C	999	11 11 11 11 11 11 11 11	32	0	0	9	28	0	0	19	26	0	0	9	24	0	0	18	41	0	0	22	32	0	0	18	19	0	0	13	19	0	0	13	25
chr18	69659520	G	T	999	11 11 11 11 11 11 11 11	64	0	0	39	52	0	0	42	44	0	0	53	39	0	0	40	38	0	0	36	42	0	0	32	39	0	0	35	40	0	0	27	37
chr18	69659522	T	C	999	11 11 11 11 11 11 11 11	64	0	0	38	52	0	0	43	44	0	0	52	40	0	0	40	37	0	0	36	42	0	0	32	39	0	0	35	40	0	0	27	37
chr18	70445180	T	C	999	11 11 11 11 11 11 11 11	41	0	0	22	34	0	0	29	28	0	0	24	31	0	0	27	27	0	0	36	33	0	0	35	27	0	0	23	22	0	0	21	20
chr18	70739421	A	G	999	11 11 11 11 11 11 11 11	40	0	0	18	31	0	0	21	33	0	0	30	40	0	0	27	34	0	0	30	25	0	0	28	17	0	0	21	19	0	0	19	22	merge_repeat		chromOut		nested
chr18	70770017	T	C	999	11 11 11 11 11 11 11 11	37	0	0	20	17	0	0	16	25	0	0	21	23	0	0	17	24	0	0	22	30	0	0	21	21	0	0	29	30	0	0	20	21
chr18	70934669	T	G	999	11 11 11 11 11 11 11 11	28	0	0	13	15	0	0	16	29	0	0	12	25	0	2	25	17	0	0	15	18	0	0	23	17	0	0	20	19	0	0	21	17	merge_repeat		chromOut
chr18	71079716	G	T	999	11 11 11 11 11 11 11 11	34	0	0	19	19	1	0	19	19	0	0	15	21	1	0	23	18	0	0	20	14	0	0	11	24	0	2	23	19	0	0	14	25	merge_repeat		chromOut
chr18	72148418	G	T	999	11 11 11 11 11 11 11 11	27	0	0	22	14	0	0	21	17	0	0	25	9	0	0	17	16	0	0	18	13	0	0	24	18	0	0	17	10	0	0	28	12	merge_repeat	trfMask	chromOut	simple
chr18	72696444	A	G	999	11 11 11 11 11 11 11 11	52	0	0	37	37	0	0	34	34	0	0	35	29	0	0	40	39	0	0	35	25	0	0	22	36	0	0	27	25	0	0	29	34
chr18	72696445	T	A	999	11 11 11 11 11 11 11 11	52	0	0	37	37	0	0	35	34	0	0	35	29	0	0	40	39	0	0	35	25	0	0	22	36	0	0	27	25	0	0	29	34
chr18	72696452	G	T	999	11 11 11 11 11 11 11 11	53	0	0	42	40	0	0	37	34	0	0	43	31	0	0	44	40	0	0	40	27	0	0	25	38	0	0	26	27	0	0	31	38
chr18	74117720	T	G	999	11 11 11 11 11 11 11 11	48	0	0	23	27	0	0	25	35	0	0	18	35	0	0	27	21	0	0	27	29	0	0	34	19	0	0	26	30	0	0	37	28
chr18	74821479	A	G	999	11 11 11 11 11 11 11 11	21	0	0	25	8	0	0	34	7	0	0	28	1	0	0	29	3	0	0	14	7	0	0	32	5	0	0	26	4	0	0	29	3	merge_repeat		chromOut		nested
chr18	75306412	T	C	999	11 11 11 11 11 11 11 11	22	0	0	24	9	0	0	21	7	0	0	18	11	0	0	23	9	0	0	14	12	0	0	24	6	0	0	19	10	0	0	20	2	merge_repeat		chromOut
chr18	76048852	T	G	999	11 11 11 11 11 11 11 11	52	0	0	29	23	0	0	28	27	0	0	29	23	0	0	33	32	0	0	37	21	0	0	34	21	0	0	32	20	0	0	34	24	merge_repeat		chromOut		nested
chr18	76479545	T	C	999	11 11 11 11 11 11 11 11	31	0	0	19	12	0	0	32	19	0	0	35	17	0	0	29	26	0	0	20	19	0	0	30	17	0	0	31	11	0	0	23	8
chr18	76908692	A	C	999	11 11 11 11 11 11 11 11	51	0	0	30	27	0	0	25	31	0	0	27	24	0	0	30	27	0	0	33	27	0	0	27	35	0	0	34	22	0	0	29	25
chr18	77144235	T	C	999	11 11 11 11 11 11 11 11	24	0	0	16	17	0	0	21	18	0	0	17	15	0	0	12	12	0	0	11	13	0	0	12	18	0	0	11	14	0	0	17	15
chr18	77701445	C	A	999	11 11 11 11 11 11 11 11	30	0	0	11	32	0	0	9	21	0	0	21	25	0	0	17	38	0	0	18	21	0	0	14	24	0	0	13	34	0	0	11	23	merge_repeat		chromOut
chr18	77701630	C	A	999	11 11 11 11 11 11 11 11	22	0	0	16	12	0	0	12	17	0	0	15	18	0	0	14	15	0	0	11	27	0	0	14	11	0	0	8	14	0	0	8	19	merge_repeat		chromOut
chr18	80860022	A	G	999	11 11 11 11 11 11 11 11	57	0	0	30	27	0	0	29	34	0	0	36	39	0	0	32	32	0	0	28	31	0	0	28	31	0	0	33	30	0	0	36	30
chr18	81120818	G	C	999	11 11 11 11 11 11 11 11	42	0	0	19	28	0	0	22	20	0	0	20	42	0	0	29	27	0	0	26	29	0	0	27	24	0	0	26	24	0	0	23	20
chr18	81212140	A	G	999	11 11 11 11 11 11 11 11	30	0	0	20	21	0	0	20	28	0	0	12	18	0	0	28	20	0	0	36	24	0	0	28	33	0	0	24	34	0	0	34	25
chr18	81570499	G	A	999	11 11 11 11 11 11 11 11	34	0	0	17	21	0	0	9	25	0	0	17	28	0	0	17	21	0	0	18	26	0	0	11	31	0	0	9	25	0	0	16	28
chr18	82160600	G	C	999	11 11 11 11 11 11 11 11	30	0	0	27	17	0	0	32	15	0	0	35	20	0	0	32	17	0	0	32	13	0	0	17	13	0	0	25	21	0	0	29	17	merge_repeat			simple
chr18	82161519	G	T	999	11 11 11 11 11 11 11 11	147	0	0	120	78	2	0	130	66	1	0	128	51	1	0	107	59	0	0	127	63	1	0	103	43	0	0	102	56	1	0	114	56	merge_repeat		chromOut	simple
chr18	82162252	T	C	999	11 11 11 11 11 11 11 11	28	0	0	16	13	0	0	18	10	0	0	24	12	1	0	25	25	0	0	11	18	0	0	16	16	0	0	16	16	0	0	16	12	merge_repeat			simple
chr18	82169979	A	G	999	11 11 11 11 11 11 11 11	82	0	0	86	16	1	1	90	13	0	0	80	18	0	1	95	11	3	0	87	10	1	0	68	13	1	0	73	22	1	0	94	12	merge_repeat			simple
chr18	83061768	A	G	999	11 11 11 11 11 11 11 11	38	0	0	21	23	0	0	21	33	0	0	17	21	0	0	31	21	0	0	29	24	0	0	28	24	0	0	26	22	0	0	21	23
chr18	84947472	G	A	999	11 11 11 11 11 11 11 11	49	0	0	39	19	0	0	25	32	0	0	26	26	0	0	31	33	0	0	37	28	0	0	29	27	0	0	24	30	0	0	28	21
chr18	87281816	T	C	999	11 11 11 11 11 11 11 11	52	0	0	30	31	0	0	31	30	0	0	26	31	0	0	21	31	0	0	25	32	0	0	18	35	0	0	29	34	0	0	25	36
chr18	88778468	G	C	999	11 11 11 11 11 11 11 11	38	0	0	36	20	0	0	29	14	0	0	28	21	0	0	36	20	0	0	35	25	0	0	19	19	0	0	34	16	0	0	38	10
chr18	88778478	A	C	999	11 11 11 11 11 11 11 11	37	0	0	34	22	0	0	27	16	0	0	28	26	0	0	37	20	0	0	37	25	0	0	17	20	0	0	30	19	0	0	37	14
chr18	89204532	C	A	999	11 11 11 11 11 11 11 11	25	0	0	16	21	0	0	17	12	0	0	20	18	0	1	22	13	0	0	18	13	0	0	19	9	0	0	15	10	0	0	15	13