chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr15	3345023	G	A	999	11 11 11 11 11 11 11 11	41	0	0	31	22	0	0	24	17	0	0	25	20	0	0	37	32	0	0	36	21	0	0	37	18	0	0	29	21	0	0	29	26
chr15	3828094	G	C	999	11 11 11 11 11 11 11 11	42	0	0	28	23	0	0	32	27	0	0	33	26	0	0	38	23	0	0	37	29	0	0	38	29	0	0	25	17	0	0	36	30	merge_repeat		chromOut
chr15	4131653	A	C	999	11 11 11 11 11 11 11 11	24	0	0	4	20	0	0	10	17	0	0	15	11	0	0	11	22	0	0	21	24	0	0	15	19	0	0	12	16	0	0	12	18
chr15	5157250	T	G	999	11 11 11 11 11 11 11 11	35	0	1	28	23	0	0	30	26	0	0	17	18	0	0	28	30	0	0	24	26	0	0	32	26	0	0	27	18	0	0	28	21	merge_repeat		chromOut
chr15	6455209	A	G	999	11 11 11 11 11 11 11 11	51	0	0	32	31	0	0	42	36	0	0	37	26	0	0	43	34	0	0	42	36	0	0	35	23	0	0	44	34	0	0	30	21	merge_repeat		chromOut
chr15	6666075	A	T	999	11 11 11 11 11 11 11 11	21	0	0	18	19	0	0	7	14	0	0	13	17	0	0	26	30	0	0	14	20	0	0	25	17	0	0	18	12	0	0	24	23
chr15	6666155	C	T	999	11 11 11 11 11 11 11 11	28	0	0	33	13	0	0	21	7	0	0	22	19	0	0	53	26	0	0	38	19	0	0	37	21	0	0	31	12	0	0	33	23
chr15	6666223	G	A	999	11 11 11 11 11 11 11 11	42	0	0	38	14	0	0	33	9	0	0	33	13	0	0	50	23	0	0	52	17	0	0	30	16	0	0	33	18	0	0	33	29
chr15	6666230	G	C	999	11 11 11 11 11 11 11 11	42	0	0	40	13	0	0	33	9	0	0	33	14	0	0	43	24	0	0	51	18	0	0	30	17	0	0	35	20	0	0	34	29
chr15	6666289	A	C	999	11 11 11 11 11 11 11 11	45	0	0	35	17	0	0	39	11	0	0	32	16	0	0	33	25	0	0	40	17	0	0	22	23	0	0	29	22	0	0	21	26	merge_repeat		chromOut
chr15	6667410	A	C	999	11 11 11 11 11 11 11 11	47	0	0	34	29	0	0	31	31	0	0	22	29	0	0	28	30	0	0	34	28	0	0	24	29	0	0	21	26	0	0	23	26	merge_repeat		chromOut		nested
chr15	6667489	T	G	999	11 11 11 11 11 11 11 11	51	0	0	32	25	0	0	34	22	0	0	28	33	0	0	27	27	0	0	29	30	0	0	23	30	0	0	33	29	0	0	24	27	merge_repeat		chromOut		nested
chr15	6667525	A	C	999	11 11 11 11 11 11 11 11	50	0	0	26	24	0	0	31	21	0	0	25	31	0	0	30	25	0	0	26	26	0	0	25	26	0	0	28	31	0	0	26	28	merge_repeat		chromOut		nested
chr15	6667678	T	C	999	11 11 11 11 11 11 11 11	47	0	0	32	32	0	0	28	21	0	0	24	23	0	0	36	26	0	0	44	31	0	0	34	22	0	0	37	23	0	0	32	20
chr15	6667831	C	T	999	11 11 11 11 11 11 11 11	55	0	0	40	36	0	0	33	33	0	0	45	33	0	0	43	36	0	0	29	26	0	0	37	26	0	0	42	32	0	0	46	29
chr15	7167980	A	G	999	11 11 11 11 11 11 11 11	36	0	0	28	28	0	0	24	20	0	0	23	22	0	0	33	25	0	0	37	19	0	0	25	25	0	0	15	32	0	0	14	22
chr15	7422384	G	T	999	11 11 11 11 11 11 11 11	20	0	0	7	27	0	0	4	20	0	0	7	13	1	0	12	18	0	0	8	21	0	0	7	18	1	0	14	17	0	0	12	19	merge_repeat			simple
chr15	8069778	G	T	999	11 11 11 11 11 11 11 11	23	0	0	9	16	0	0	11	18	0	0	15	8	0	0	11	23	0	0	13	16	0	0	11	13	0	0	18	12	0	0	13	17	merge_repeat		chromOut		nested
chr15	8367345	A	G	999	11 11 11 11 11 11 11 11	39	0	0	21	18	0	0	21	29	0	0	28	30	0	0	18	34	0	0	23	17	0	0	25	28	0	0	24	18	0	0	18	22	merge_repeat		chromOut
chr15	9006548	G	C	999	11 11 11 11 11 11 11 11	22	0	0	10	12	0	0	16	7	0	0	17	6	0	0	23	15	0	0	18	13	0	0	18	8	0	0	21	12	0	0	18	9	merge_repeat	trfMask	chromOut	simple
chr15	9009936	C	G	999	11 11 11 11 11 11 11 11	41	0	0	36	23	0	0	35	20	0	0	34	22	0	0	26	17	0	0	20	26	0	0	35	13	0	0	28	17	0	0	24	17	merge_repeat		chromOut		nested
chr15	9010097	A	G	999	11 11 11 11 11 11 11 11	47	0	0	31	40	0	0	32	26	0	0	30	30	0	0	26	21	0	0	27	22	0	0	21	31	0	0	33	30	0	0	29	22	merge_repeat		chromOut		nested
chr15	9010110	A	G	999	11 11 11 11 11 11 11 11	49	0	0	32	39	0	0	32	28	0	0	29	30	0	0	30	19	0	0	26	23	0	0	21	36	0	0	35	30	0	0	29	21	merge_repeat		chromOut		nested
chr15	9363796	A	G	999	11 11 11 11 11 11 11 11	20	0	0	16	19	0	0	14	22	0	0	9	24	0	0	14	18	0	1	15	34	0	0	14	26	0	0	14	25	0	0	5	15	merge_repeat		chromOut		nested
chr15	9387844	G	T	999	11 11 11 11 11 11 11 11	34	0	0	17	18	0	0	29	16	0	0	16	20	0	0	22	15	0	1	28	25	0	0	16	18	0	0	27	27	0	0	27	11	merge_repeat		chromOut
chr15	12290805	G	A	999	11 11 11 11 11 11 11 11	38	0	1	35	16	0	1	40	9	0	0	29	19	0	0	28	17	0	0	37	13	0	0	30	18	0	0	23	15	0	1	35	20	merge_repeat	trfMask	chromOut	simple
chr15	13211775	A	G	999	11 11 11 11 11 11 11 11	49	0	0	25	32	0	0	20	29	0	0	36	19	0	0	31	26	0	0	29	31	0	0	40	27	0	0	27	25	0	0	26	24
chr15	13451670	G	T	999	11 11 11 11 11 11 11 11	50	0	0	38	35	0	0	29	21	0	0	45	21	0	0	46	21	0	0	35	22	0	0	32	26	0	0	36	29	0	0	47	19	merge_repeat		chromOut
chr15	14799317	C	G	999	11 11 11 11 11 11 11 11	35	0	0	14	21	0	0	18	36	0	0	20	25	0	0	22	24	0	0	21	37	0	0	27	29	0	0	13	34	0	0	15	26	merge_repeat	trfMask		simple
chr15	15358563	A	G	999	11 11 11 11 11 11 11 11	26	0	0	22	12	0	0	28	12	0	0	23	23	0	0	22	14	0	0	21	16	0	0	26	25	0	0	17	18	0	0	15	11	merge_repeat				nested
chr15	15673946	T	C	999	11 11 11 11 11 11 11 11	38	0	0	23	26	0	0	24	14	0	0	23	21	0	0	39	22	0	0	33	31	0	0	27	17	0	0	27	17	0	0	39	20	merge_repeat		chromOut
chr15	17360563	T	G	999	11 11 11 11 11 11 11 11	56	0	0	39	25	1	0	27	44	0	0	39	32	0	0	39	36	0	1	29	31	0	0	28	33	0	0	35	30	0	0	24	32	merge_repeat		chromOut
chr15	19219756	T	C	999	11 11 11 11 11 11 11 11	49	0	0	34	24	0	0	32	30	0	0	33	21	0	0	21	28	0	0	28	31	0	0	32	24	0	0	36	34	0	0	37	20	merge_repeat		chromOut		nested
chr15	22578608	T	G	999	11 11 11 11 11 11 11 11	26	0	0	14	12	0	0	15	17	0	0	10	26	0	0	13	32	0	0	17	30	0	0	17	21	0	0	5	22	0	0	13	22	merge_repeat	trfMask	chromOut	simple	nested
chr15	22615292	C	A	999	11 11 11 11 11 11 11 11	29	0	0	24	24	0	0	22	22	0	0	24	26	0	0	28	18	0	0	19	23	0	0	14	16	0	0	27	18	0	0	16	13
chr15	24462274	C	A	999	11 11 11 11 11 11 11 11	51	0	0	25	26	0	0	36	33	0	0	36	37	0	0	30	32	0	0	31	41	0	0	30	40	0	0	32	26	0	0	32	33	merge_repeat		chromOut		nested
chr15	24462283	T	G	999	11 11 11 11 11 11 11 11	53	0	0	27	26	0	0	36	33	0	0	35	36	0	0	32	34	0	0	29	43	0	0	31	39	0	0	33	26	0	0	29	31	merge_repeat		chromOut		nested
chr15	24925575	C	A	999	11 11 11 11 11 11 11 11	22	0	0	13	13	0	0	17	16	0	0	18	12	0	0	14	17	0	0	19	20	0	0	23	12	0	0	13	10	0	0	12	10
chr15	25303293	G	T	999	11 11 11 11 11 11 11 11	29	0	0	5	25	1	0	3	26	0	0	5	24	0	0	8	37	0	0	7	27	1	0	5	34	1	0	4	29	0	0	6	26
chr15	25770274	T	C	999	11 11 11 11 11 11 11 11	60	0	0	37	23	0	0	37	38	0	0	29	33	0	0	27	44	0	0	32	34	1	0	38	34	0	0	28	38	0	0	32	41	merge_repeat		chromOut
chr15	26681106	A	G	658	11 11 11 11 11 11 11 11	21	0	0	10	13	0	0	9	14	0	0	8	25	0	0	15	16	0	0	5	20	0	0	9	12	0	0	7	19	0	0	7	20	merge_repeat		chromOut	simple
chr15	28142048	A	T	999	11 11 11 11 11 11 11 11	43	0	0	23	29	0	0	19	27	0	0	18	26	0	0	25	26	0	0	24	28	0	0	33	31	0	0	19	24	0	0	19	38
chr15	28183173	A	G	999	11 11 11 11 11 11 11 11	29	0	0	1	28	0	0	5	29	0	0	8	26	0	0	7	34	0	0	13	26	0	0	8	37	0	0	6	37	0	0	4	27
chr15	28951550	C	A	999	11 11 11 11 11 11 11 11	40	0	0	24	27	0	0	24	26	0	0	22	18	0	0	25	33	0	0	35	25	0	0	25	24	0	0	22	26	0	0	17	42
chr15	29162648	T	A	999	11 11 11 11 11 11 11 11	55	0	0	29	33	0	0	43	35	0	0	39	22	0	0	38	28	0	0	33	25	0	0	30	32	0	0	31	28	0	0	30	25	merge_repeat		chromOut
chr15	29162650	T	G	999	11 11 11 11 11 11 11 11	57	0	0	29	32	0	0	43	36	0	0	40	23	0	0	38	28	0	0	33	25	0	0	29	32	0	0	31	29	0	0	30	27	merge_repeat		chromOut
chr15	29380734	A	T	999	11 11 11 11 11 11 11 11	38	0	0	20	22	0	0	14	27	0	0	20	18	0	0	20	21	0	0	24	19	0	0	18	26	0	0	16	25	0	0	17	30	merge_repeat		chromOut
chr15	29462676	A	C	999	11 11 11 11 11 11 11 11	46	1	1	24	30	0	0	19	30	0	0	23	32	0	0	20	26	0	0	26	23	0	1	26	35	0	0	20	29	0	0	30	24	merge_repeat	trfMask	chromOut	simple	nested
chr15	30233857	C	T	999	11 11 11 11 11 11 11 11	62	0	0	32	32	0	0	44	28	0	0	30	36	0	0	31	36	0	0	29	34	0	0	30	32	0	0	38	37	0	0	30	38
chr15	30995105	T	A	999	11 11 11 11 11 11 11 11	23	0	0	28	8	0	0	35	7	0	0	26	6	0	0	19	7	0	0	21	17	0	0	13	10	0	1	18	7	0	0	26	8
chr15	31078368	G	A	999	11 11 11 11 11 11 11 11	39	0	0	37	14	0	0	32	17	0	0	28	16	0	0	34	16	0	0	19	20	0	0	29	13	0	0	31	22	0	0	29	19
chr15	33109958	C	T	999	11 11 11 11 11 11 11 11	25	0	0	36	20	0	0	25	19	0	0	21	23	0	0	22	27	0	0	23	20	0	0	10	15	0	0	22	34	0	0	22	35	merge_repeat	trfMask	chromOut	simple	nested
chr15	34998762	A	C	999	11 11 11 11 11 11 11 11	39	0	0	31	24	0	0	34	28	0	0	36	23	0	0	38	23	0	0	29	10	0	0	29	21	0	0	32	15	0	0	31	27	merge_repeat		chromOut
chr15	36573806	T	A	999	11 11 11 11 11 11 11 11	23	0	0	20	9	0	0	16	7	0	0	25	10	0	0	22	14	0	0	26	14	0	0	15	12	0	0	29	10	0	0	25	6	merge_repeat		chromOut
chr15	36575259	G	T	999	11 11 11 11 11 11 11 11	28	0	0	19	19	0	0	17	16	0	0	9	21	0	0	29	16	0	0	17	17	0	0	13	15	0	0	17	15	0	0	16	14	merge_repeat		chromOut	simple	nested
chr15	36575347	C	G	999	11 11 11 11 11 11 11 11	24	0	0	16	19	0	0	16	23	0	0	20	28	0	0	29	12	0	0	34	19	0	0	14	14	0	0	15	9	0	0	18	18	merge_repeat		chromOut	simple	nested
chr15	36575349	C	T	999	11 11 11 11 11 11 11 11	24	0	0	16	20	0	0	16	23	0	0	21	28	0	0	31	12	0	0	34	20	0	0	14	14	0	0	15	9	0	0	18	18	merge_repeat		chromOut	simple	nested
chr15	37462413	A	T	999	11 11 11 11 11 11 11 11	50	0	0	32	35	0	0	30	25	0	0	39	30	0	0	31	31	0	0	37	36	0	0	32	25	0	0	40	28	0	0	25	25
chr15	38992560	G	A	999	11 11 11 11 11 11 11 11	37	0	0	26	25	0	0	33	20	0	0	35	21	0	0	30	28	0	0	24	13	1	0	24	27	0	0	30	31	0	0	32	28	merge_repeat	trfMask	chromOut	simple
chr15	39157554	G	C	999	11 11 11 11 11 11 11 11	28	0	0	13	21	0	0	18	26	0	0	6	22	0	0	23	27	0	0	24	30	0	0	16	22	0	0	17	24	0	0	18	25	merge_repeat	trfMask	chromOut	simple
chr15	40433541	A	C	999	11 11 11 11 11 11 11 11	38	0	0	16	28	0	0	15	40	0	0	19	36	0	0	29	26	0	0	23	30	1	0	18	19	0	0	14	28	0	0	15	31
chr15	42746895	T	G	999	11 11 11 11 11 11 11 11	32	0	0	22	21	0	0	27	30	0	0	24	22	0	0	33	25	0	0	18	14	0	0	36	14	0	0	32	21	0	0	24	22	merge_repeat	trfMask	chromOut	simple	nested
chr15	43082037	A	G	999	11 11 11 11 11 11 11 11	46	0	0	26	33	0	0	35	31	0	0	20	26	0	0	27	29	0	0	29	25	0	0	20	38	0	0	34	38	0	0	26	29	merge_repeat		chromOut
chr15	43082046	A	G	999	11 11 11 11 11 11 11 11	50	0	0	28	31	0	0	34	30	0	0	23	27	0	0	27	28	0	0	27	25	0	0	21	37	0	0	33	40	0	0	26	29	merge_repeat		chromOut
chr15	43468952	T	C	999	11 11 11 11 11 11 11 11	38	0	0	26	30	0	0	33	25	0	0	22	28	0	0	21	18	0	0	25	18	0	0	13	25	0	0	27	22	0	0	27	24	merge_repeat		chromOut		nested
chr15	45808211	T	C	999	11 11 11 11 11 11 11 11	50	0	0	33	27	0	0	30	28	0	0	27	23	0	0	28	26	0	0	26	31	0	0	29	23	0	0	35	26	0	0	42	19	merge_repeat		chromOut		nested
chr15	47151439	G	T	999	11 11 11 11 11 11 11 11	50	0	0	24	27	0	0	25	41	0	0	20	30	0	0	32	38	0	0	28	41	0	0	25	35	0	0	25	47	0	0	31	21
chr15	47544223	A	C	999	11 11 11 11 11 11 11 11	63	0	0	36	46	0	0	27	44	0	0	40	33	0	0	33	40	0	0	29	34	0	0	36	39	0	0	29	43	0	0	38	44	merge_repeat		chromOut		nested
chr15	47796807	T	C	999	11 11 11 11 11 11 11 11	29	0	0	21	21	0	0	14	24	0	0	17	18	0	0	22	25	0	0	16	16	0	0	17	17	0	0	15	18	0	0	16	13	merge_repeat		chromOut
chr15	47796813	T	C	999	11 11 11 11 11 11 11 11	29	0	0	19	19	0	0	15	23	0	0	18	16	0	0	23	23	0	0	16	16	0	0	16	16	0	0	15	18	0	0	16	13	merge_repeat		chromOut
chr15	47796834	T	C	999	11 11 11 11 11 11 11 11	25	0	0	15	18	0	0	14	14	0	0	19	14	0	0	22	22	0	0	16	13	0	0	18	12	0	0	15	12	0	0	15	10	merge_repeat		chromOut
chr15	48006910	A	T	999	11 11 11 11 11 11 11 11	49	0	0	25	36	0	0	29	36	0	0	29	28	0	0	25	28	0	0	25	27	0	0	29	26	0	0	22	27	0	0	20	39
chr15	48006911	C	T	999	11 11 11 11 11 11 11 11	48	0	0	25	36	0	0	29	36	0	0	29	28	0	0	25	28	0	0	25	27	0	0	29	25	0	0	22	26	0	0	20	39
chr15	48006912	A	C	999	11 11 11 11 11 11 11 11	49	0	0	25	36	0	0	29	36	0	0	29	28	0	0	25	28	0	0	25	27	0	0	29	25	0	0	22	27	0	0	20	39
chr15	48006914	A	G	999	11 11 11 11 11 11 11 11	49	0	0	25	36	0	0	29	36	0	0	29	28	0	0	25	28	0	0	25	27	0	0	28	26	0	0	22	27	0	0	20	39
chr15	49266269	A	G	999	11 11 11 11 11 11 11 11	47	0	0	30	22	1	0	28	22	0	0	32	26	0	0	23	35	0	0	41	29	0	0	21	26	0	0	22	32	0	0	33	24	merge_repeat		chromOut
chr15	49962662	T	C	999	11 11 11 11 11 11 11 11	48	0	0	24	31	0	0	27	37	0	0	19	29	0	0	26	24	0	0	28	32	0	0	37	28	0	0	22	30	0	0	26	31	merge_repeat		chromOut
chr15	52706498	G	C	999	11 11 11 11 11 11 11 11	28	0	0	14	21	0	0	13	16	0	0	15	13	0	0	21	18	0	0	26	19	0	0	17	25	0	0	23	25	0	0	16	20	merge_repeat		chromOut		nested
chr15	53498153	T	G	999	11 11 11 11 11 11 11 11	26	0	0	18	24	0	0	11	22	0	0	15	15	0	0	9	17	0	0	18	29	0	0	13	26	0	0	18	18	0	0	9	24	merge_repeat		chromOut		nested
chr15	53804048	G	T	999	11 11 11 11 11 11 11 11	32	0	0	20	33	0	0	34	23	0	0	21	27	0	0	35	27	0	0	20	24	0	0	16	16	0	0	18	22	1	0	34	23
chr15	54615300	T	C	999	11 11 11 11 11 11 11 11	62	0	0	38	29	0	0	29	44	0	0	54	40	0	0	30	32	0	0	38	48	0	0	39	39	0	0	29	39	0	0	38	38
chr15	55098608	T	C	999	11 11 11 11 11 11 11 11	20	0	0	19	1	0	0	24	5	0	0	24	6	0	0	19	7	0	0	25	3	0	0	19	14	0	0	33	12	0	0	15	6	merge_repeat		chromOut
chr15	56020351	A	C	999	11 11 11 11 11 11 11 11	51	0	0	32	19	0	0	36	23	0	0	30	24	0	0	33	25	0	0	42	25	0	0	27	27	0	0	28	27	0	0	36	19	merge_repeat		chromOut
chr15	57238600	G	T	999	11 11 11 11 11 11 11 11	27	0	0	18	18	0	0	15	24	0	0	18	22	0	0	21	28	0	0	16	31	0	0	16	12	0	0	12	20	0	0	13	14	merge_repeat	trfMask	chromOut	simple	nested
chr15	58192211	C	A	999	11 11 11 11 11 11 11 11	28	0	0	18	20	0	0	17	17	0	0	20	14	0	0	24	27	0	0	25	26	0	0	25	25	0	0	20	24	0	0	6	22
chr15	61572609	A	G	999	11 11 11 11 11 11 11 11	57	0	0	35	29	0	0	32	25	0	0	31	28	0	0	26	32	0	0	34	36	0	0	30	28	0	0	31	28	0	0	22	37
chr15	61572937	A	G	999	11 11 11 11 11 11 11 11	55	0	0	24	35	0	0	37	24	0	0	33	30	0	0	42	30	0	0	41	34	0	0	32	27	0	0	32	35	0	0	26	29
chr15	61573448	A	G	999	11 11 11 11 11 11 11 11	50	0	0	38	24	0	0	41	27	0	0	33	29	0	0	40	39	0	0	41	29	0	0	23	29	0	0	36	29	0	0	31	19
chr15	61583241	T	C	999	11 11 11 11 11 11 11 11	35	0	0	28	26	0	0	22	24	0	0	28	30	0	0	39	23	0	0	32	11	0	0	19	16	0	0	14	21	0	0	26	18
chr15	61583480	T	C	999	11 11 11 11 11 11 11 11	44	0	0	42	30	0	0	33	18	0	0	31	37	0	0	31	42	0	0	31	36	0	0	29	22	0	0	22	22	0	0	29	31
chr15	61693736	A	G	999	11 11 11 11 11 11 11 11	37	0	0	31	32	0	0	27	17	0	0	28	23	0	0	25	14	0	0	37	31	0	0	24	17	0	0	36	26	0	0	21	16
chr15	62085480	T	C	999	11 11 11 11 11 11 11 11	38	0	0	19	19	0	0	17	30	0	0	23	36	0	0	19	28	0	0	19	39	0	0	16	28	0	0	21	39	0	0	27	34
chr15	63570244	C	A	999	11 11 11 11 11 11 11 11	51	0	0	37	24	0	0	36	35	0	0	27	24	0	0	39	40	0	0	33	25	0	0	31	29	0	0	24	42	0	0	40	30	merge_repeat		chromOut		nested
chr15	63570265	C	A	999	11 11 11 11 11 11 11 11	54	0	0	33	26	0	0	36	33	0	0	31	23	0	0	42	37	0	1	32	24	0	0	27	28	0	0	21	46	0	0	42	25	merge_repeat		chromOut		nested
chr15	64700754	A	G	999	11 11 11 11 11 11 11 11	54	0	0	23	31	0	0	34	31	0	0	34	44	0	0	29	37	0	0	29	40	0	0	28	35	0	0	33	33	0	0	35	30
chr15	64979677	G	A	999	11 11 11 11 11 11 11 11	23	0	0	15	8	0	0	19	12	0	0	15	9	0	0	15	16	0	0	20	18	0	0	23	16	0	0	15	13	0	0	20	14	merge_repeat		chromOut
chr15	68282887	T	G	999	11 11 11 11 11 11 11 11	22	0	0	14	13	0	0	11	11	0	0	14	12	0	0	8	16	0	0	21	17	0	0	11	16	0	0	14	14	0	0	14	11	merge_repeat		chromOut
chr15	72320258	T	A	999	11 11 11 11 11 11 11 11	25	0	0	23	10	0	0	12	13	0	0	17	20	0	0	18	13	0	0	26	19	0	0	17	8	0	0	29	16	0	0	18	15	merge_repeat	trfMask	chromOut	simple
chr15	73208250	T	C	999	11 11 11 11 11 11 11 11	47	0	0	26	31	0	0	27	20	0	0	31	30	0	0	36	23	0	0	32	25	0	0	29	29	0	0	30	22	0	0	38	32	merge_repeat		chromOut
chr15	73208251	G	A	999	11 11 11 11 11 11 11 11	47	0	0	26	30	0	0	27	20	0	0	30	30	1	0	35	23	0	0	32	25	0	0	29	29	0	0	30	21	0	0	38	32	merge_repeat		chromOut
chr15	73208252	C	T	999	11 11 11 11 11 11 11 11	47	0	0	26	30	0	0	27	20	0	0	31	30	1	0	35	23	0	0	31	26	0	0	29	28	0	0	30	22	0	0	38	32	merge_repeat		chromOut
chr15	74895882	A	C	999	11 11 11 11 11 11 11 11	50	0	0	32	21	0	0	37	28	0	0	33	25	0	0	36	36	0	0	41	31	0	0	23	32	0	0	32	18	0	0	40	23	merge_repeat		chromOut
chr15	75086460	T	G	999	11 11 11 11 11 11 11 11	654	3	2	522	127	2	3	550	127	1	4	531	197	4	4	560	157	4	2	558	166	4	5	544	184	1	3	557	134	3	1	521	149	merge_repeat					segmentDup
chr15	75614707	T	A	999	11 11 11 11 11 11 11 11	44	0	0	31	23	0	0	19	36	0	0	26	36	0	0	36	33	0	0	29	26	0	0	18	26	0	0	24	27	0	0	24	33
chr15	75729350	A	G	999	11 11 11 11 11 11 11 11	40	0	0	19	21	0	0	18	28	0	0	31	27	0	0	33	30	0	0	21	39	0	0	26	19	0	0	24	30	0	0	26	19
chr15	76165679	G	A	999	11 11 11 11 11 11 11 11	24	0	0	9	18	0	0	12	14	0	0	3	30	0	0	13	26	0	0	13	28	0	0	6	31	0	0	9	18	0	0	13	11	merge_repeat		chromOut
chr15	77147899	A	G	999	11 11 11 11 11 11 11 11	45	0	0	19	38	0	0	23	47	0	0	15	32	0	0	22	41	0	0	19	41	0	0	24	41	0	0	18	42	0	0	15	30	merge_repeat		chromOut
chr15	79397980	C	A	999	11 11 11 11 11 11 11 11	22	0	0	10	17	0	0	20	22	0	0	17	14	0	0	15	15	0	0	13	19	0	0	18	20	0	0	17	17	0	0	14	8	merge_repeat		chromOut
chr15	79430824	C	A	999	11 11 11 11 11 11 11 11	46	0	0	26	22	0	0	39	21	0	0	35	23	0	0	55	25	0	0	39	21	0	0	23	23	0	0	23	23	0	0	34	32	merge_repeat		chromOut		nested
chr15	81259315	A	T	999	11 11 11 11 11 11 11 11	24	0	0	24	35	0	0	18	30	0	0	16	46	0	0	24	23	0	0	19	36	0	0	8	16	0	0	22	29	0	0	10	28	merge_repeat		chromOut		nested
chr15	82401319	G	C	999	11 11 11 11 11 11 11 11	44	0	0	18	30	0	0	32	41	0	0	18	32	0	0	27	28	0	0	20	41	0	0	24	26	0	0	21	34	0	0	11	33	merge_repeat		chromOut
chr15	82415852	A	G	999	11 11 11 11 11 11 11 11	26	0	0	18	21	0	0	18	24	0	0	10	18	0	0	20	26	0	0	15	23	0	0	12	24	0	0	9	18	0	0	5	21
chr15	83162107	T	C	999	11 11 11 11 11 11 11 11	47	0	0	27	20	0	0	29	18	0	0	23	26	0	0	29	22	0	0	31	26	0	0	36	29	0	0	30	24	0	0	26	28
chr15	83969903	A	C	999	11 11 11 11 11 11 11 11	52	0	0	16	36	0	0	31	36	0	0	31	36	0	0	31	28	0	0	38	42	0	0	30	27	0	0	23	41	0	0	33	37
chr15	83982814	A	C	999	11 11 11 11 11 11 11 11	37	0	0	23	22	0	0	13	28	0	0	24	27	0	0	27	25	0	0	33	23	0	0	15	22	0	0	24	18	0	0	21	22
chr15	84834736	T	A	999	11 11 11 11 11 11 11 11	44	0	0	32	26	0	0	21	27	0	0	27	17	0	0	30	34	0	0	22	29	0	0	31	38	0	0	23	21	0	0	25	35	merge_repeat		chromOut
chr15	85651552	A	G	999	11 11 11 11 11 11 11 11	33	0	0	25	19	0	0	24	21	0	0	18	15	0	0	33	35	0	0	27	21	0	0	29	16	0	0	24	17	0	0	22	22
chr15	86298822	G	A	999	11 11 11 11 11 11 11 11	52	0	0	29	27	0	0	25	27	0	0	34	33	0	0	29	35	0	0	33	29	0	0	28	35	0	0	28	39	0	0	31	31	merge_repeat		chromOut
chr15	86920562	G	T	999	11 11 11 11 11 11 11 11	21	0	0	11	10	0	0	16	17	0	0	13	23	0	0	19	19	0	0	18	15	0	0	15	18	0	0	22	12	0	0	17	16	merge_repeat		chromOut		nested
chr15	86920568	G	T	999	11 11 11 11 11 11 11 11	22	0	0	9	13	0	0	10	16	0	0	13	23	0	0	15	20	0	0	13	15	0	0	12	20	0	0	12	14	0	0	14	15	merge_repeat		chromOut		nested
chr15	88578908	T	A	999	11 11 11 11 11 11 11 11	53	0	0	37	33	0	0	39	28	0	0	24	31	0	0	40	43	0	0	23	44	0	0	40	39	0	0	23	30	0	0	26	31	merge_repeat		chromOut		nested
chr15	88764431	T	C	999	11 11 11 11 11 11 11 11	34	0	0	17	28	0	0	22	27	1	0	21	17	0	0	25	28	0	0	23	24	0	0	17	17	0	0	11	27	0	0	12	24	merge_repeat		chromOut
chr15	88764433	G	A	999	11 11 11 11 11 11 11 11	34	0	0	18	28	0	0	22	27	0	0	22	17	0	0	25	28	0	0	23	24	0	0	17	17	0	0	11	27	0	0	12	24	merge_repeat		chromOut
chr15	89973383	A	G	999	11 11 11 11 11 11 11 11	22	0	0	16	6	0	0	19	9	0	0	24	7	0	0	23	6	0	0	33	12	0	0	23	7	0	0	20	18	0	0	20	10	merge_repeat	trfMask	chromOut	simple
chr15	91406085	T	C	999	11 11 11 11 11 11 11 11	45	0	0	32	29	0	0	37	32	0	0	23	22	0	0	35	28	0	0	34	36	0	0	33	37	0	0	34	24	0	0	35	28
chr15	91406110	G	A	999	11 11 11 11 11 11 11 11	43	0	0	31	24	0	0	40	31	0	0	22	21	0	0	34	29	0	0	33	32	0	0	34	37	0	0	35	24	0	0	36	21	merge_repeat		chromOut
chr15	93757815	C	G	999	11 11 11 11 11 11 11 11	36	0	0	21	22	0	0	22	33	0	0	26	27	0	0	29	33	0	1	23	23	0	0	23	28	0	0	16	22	0	0	17	19
chr15	94552813	G	T	999	11 11 11 11 11 11 11 11	40	0	0	22	18	0	0	34	46	0	0	39	37	0	0	38	38	0	0	30	34	0	0	25	38	0	0	27	34	0	0	30	40	merge_repeat		chromOut	simple
chr15	94552829	G	T	999	11 11 11 11 11 11 11 11	42	0	0	23	19	0	0	33	45	0	0	37	41	0	0	39	39	0	0	27	36	0	0	23	39	0	0	27	32	0	0	29	38	merge_repeat		chromOut	simple
chr15	94996783	T	C	999	11 11 11 11 11 11 11 11	36	0	0	24	34	0	0	22	20	0	0	21	22	1	0	38	26	0	0	14	22	0	0	14	23	0	0	16	30	0	0	12	28
chr15	94996814	T	C	999	11 11 11 11 11 11 11 11	30	0	0	24	25	0	0	17	13	0	0	19	17	0	0	40	16	0	0	16	20	0	0	14	16	0	0	14	26	0	0	13	22
chr15	96056464	T	C	999	11 11 11 11 11 11 11 11	28	0	0	23	14	0	0	20	8	0	0	24	12	0	0	31	16	0	0	38	18	0	0	25	12	0	0	21	14	0	0	16	12	merge_repeat	trfMask	chromOut	simple
chr15	97609557	T	A	999	11 11 11 11 11 11 11 11	25	0	0	24	11	0	0	20	16	0	0	19	11	0	0	30	17	0	0	31	9	0	0	17	8	0	0	23	18	0	0	15	13	merge_repeat	trfMask	chromOut	simple
chr15	97774552	A	T	999	11 11 11 11 11 11 11 11	23	0	0	6	23	0	0	5	25	0	0	9	16	0	0	11	17	0	0	9	14	0	0	5	21	0	0	13	19	0	0	7	22	merge_repeat	trfMask	chromOut	simple
chr15	98021123	T	G	999	11 11 11 11 11 11 11 11	37	0	0	33	24	0	0	18	29	0	0	23	24	0	0	41	33	0	0	29	32	0	0	25	27	0	0	21	16	0	0	24	26
chr15	98533892	G	C	999	11 11 11 11 11 11 11 11	38	0	0	21	17	0	0	32	21	0	0	24	23	0	0	30	29	0	0	19	29	0	0	22	23	0	0	27	26	0	0	21	20	merge_repeat		chromOut
chr15	99128994	C	G	999	11 11 11 11 11 11 11 11	44	0	0	31	31	0	0	25	30	0	0	18	42	0	0	29	39	0	0	22	28	0	0	25	39	0	0	19	25	0	0	20	28	merge_repeat		chromOut
chr15	99287694	T	C	999	11 11 11 11 11 11 11 11	40	0	0	23	24	0	0	25	27	0	0	32	27	0	0	31	29	0	0	23	17	0	0	29	22	0	0	30	25	0	0	26	33	merge_repeat		chromOut
chr15	99674760	T	C	999	11 11 11 11 11 11 11 11	42	0	0	27	36	0	0	23	19	0	0	39	29	0	0	17	27	0	0	24	31	0	0	26	19	0	0	24	20	0	0	21	27
chr15	100859129	C	T	999	11 11 11 11 11 11 11 11	20	0	0	5	27	0	0	5	15	0	1	3	32	0	0	10	24	0	0	8	17	0	0	5	18	0	0	10	22	0	0	5	23	merge_repeat	trfMask	chromOut	simple	nested
chr15	100992320	T	G	999	11 11 11 11 11 11 11 11	28	1	0	17	23	0	0	13	15	0	0	12	16	0	0	18	24	0	0	14	28	0	0	15	27	0	0	11	27	0	0	7	23	merge_repeat		chromOut		nested
chr15	101505845	T	C	999	11 11 11 11 11 11 11 11	53	0	0	32	21	0	0	31	28	0	0	33	26	0	0	37	43	0	0	28	33	0	0	28	37	0	0	43	40	0	0	32	36
chr15	101517464	C	T	999	11 11 11 11 11 11 11 11	24	0	0	4	21	0	0	10	20	0	0	11	21	0	0	8	37	0	0	9	21	0	0	8	16	0	0	12	22	0	0	7	26	merge_repeat	trfMask	chromOut	simple
chr15	101561023	A	G	999	11 11 11 11 11 11 11 11	42	0	0	25	18	0	0	24	18	0	0	37	18	0	0	31	29	0	0	34	26	0	0	35	12	0	0	28	26	0	0	30	19
chr15	103045688	T	C	999	11 11 11 11 11 11 11 11	35	0	0	24	28	0	0	31	13	0	0	25	19	0	0	32	20	0	1	17	18	0	0	27	16	0	0	20	15	0	0	29	21
chr15	103053334	T	G	999	11 11 11 11 11 11 11 11	44	0	0	19	25	0	0	30	31	0	0	23	32	0	0	24	36	0	0	19	43	0	0	23	46	0	0	18	34	0	0	22	31
chr15	103053382	G	A	999	11 11 11 11 11 11 11 11	57	0	0	33	28	0	0	35	23	0	0	34	38	0	0	30	34	0	0	27	43	0	0	37	50	0	0	24	33	0	0	30	31
chr15	103738833	C	G	999	11 11 11 11 11 11 11 11	26	0	0	23	23	0	0	21	27	0	0	7	23	0	0	22	23	0	0	21	21	0	0	14	12	0	0	27	14	0	0	17	18
chr15	103742131	A	G	999	11 11 11 11 11 11 11 11	27	0	0	25	7	0	0	16	11	0	0	29	10	0	0	23	16	0	0	26	7	0	0	17	11	0	0	21	14	0	0	15	13	merge_repeat		chromOut
chr15	103742173	A	G	999	11 11 11 11 11 11 11 11	34	0	0	32	8	0	0	21	13	0	0	41	12	0	0	31	15	0	0	27	12	0	0	26	10	0	0	31	12	0	0	22	12	merge_repeat		chromOut
chr15	103742197	A	G	999	11 11 11 11 11 11 11 11	33	0	0	34	8	0	0	24	16	0	0	31	12	0	0	32	18	0	0	20	13	0	0	23	13	0	0	32	10	0	0	24	12	merge_repeat		chromOut
chr15	103742247	A	G	999	11 11 11 11 11 11 11 11	43	0	0	44	9	0	0	44	16	0	0	44	15	0	0	41	17	0	0	31	14	0	0	32	19	0	0	35	13	0	0	32	11
chr15	103816291	A	G	999	11 11 11 11 11 11 11 11	49	0	0	23	30	0	0	30	30	0	0	29	32	0	0	34	43	0	0	29	20	0	0	20	31	0	0	28	21	1	0	27	29	merge_repeat		chromOut		nested	segmentDup