chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr13	4104651	G	T	999	11 11 11 11 11 11 11 11	33	0	0	14	22	0	0	23	23	0	0	19	29	0	0	19	24	0	0	22	22	0	0	18	23	0	0	22	21	0	0	14	19	merge_repeat		chromOut		nested
chr13	5332485	A	G	999	11 11 11 11 11 11 11 11	39	0	0	30	24	0	0	24	15	0	0	22	25	0	0	27	20	0	0	22	22	0	0	23	31	0	0	18	22	0	0	27	21	merge_repeat		chromOut
chr13	6246279	G	T	999	11 11 11 11 11 11 11 11	23	0	0	10	13	0	0	8	18	0	0	11	24	0	0	10	19	0	0	15	16	0	0	14	12	0	0	9	17	0	0	13	15
chr13	7251569	A	G	999	11 11 11 11 11 11 11 11	60	0	1	28	34	0	0	28	39	0	0	26	39	0	0	34	27	0	0	38	30	0	0	30	42	0	0	27	36	0	0	32	28	merge_repeat		chromOut		nested
chr13	7251571	A	G	999	11 11 11 11 11 11 11 11	60	0	0	28	34	0	0	28	40	0	0	26	38	0	0	34	27	0	0	38	30	0	0	30	42	0	0	27	36	0	0	32	28	merge_repeat		chromOut		nested
chr13	7739815	G	C	999	11 11 11 11 11 11 11 11	61	0	0	27	43	0	0	44	44	0	0	35	28	0	0	34	38	0	0	35	45	0	0	35	34	0	0	36	44	0	0	28	33	merge_repeat		chromOut		nested
chr13	8329293	T	A	999	11 11 11 11 11 11 11 11	20	0	0	6	20	0	0	5	26	0	0	9	29	0	0	4	33	0	0	4	27	0	0	3	17	0	0	5	24	0	0	5	25	merge_repeat		chromOut
chr13	8406416	T	C	999	11 11 11 11 11 11 11 11	46	0	0	31	21	0	0	39	32	0	0	28	18	0	0	35	39	0	0	33	36	0	0	32	25	0	0	26	32	0	0	23	33
chr13	8436373	T	C	999	11 11 11 11 11 11 11 11	31	0	0	38	17	0	0	41	8	0	0	21	10	0	0	44	25	0	0	33	18	0	0	44	18	0	0	30	17	0	0	37	19
chr13	8436508	T	C	999	11 11 11 11 11 11 11 11	38	0	0	29	9	0	0	47	11	0	0	31	9	0	0	32	12	0	0	24	20	0	0	36	29	0	0	43	9	0	0	39	7
chr13	8436542	G	C	999	11 11 11 11 11 11 11 11	39	0	0	38	9	0	0	50	12	0	0	28	11	0	0	41	18	0	0	24	27	0	0	27	25	0	0	43	10	0	0	34	8
chr13	9327347	A	T	999	11 11 11 11 11 11 11 11	47	0	0	44	29	0	0	41	37	0	0	28	19	0	0	41	28	0	0	46	34	1	0	29	24	0	0	34	30	0	0	33	25	merge_repeat			simple
chr13	11434434	A	G	999	11 11 11 11 11 11 11 11	46	0	0	25	22	0	0	31	16	0	0	26	23	0	0	29	35	0	0	27	37	0	0	23	28	0	0	22	24	0	0	25	23	merge_repeat		chromOut
chr13	11572901	C	G	999	11 11 11 11 11 11 11 11	36	0	0	12	24	0	0	23	41	0	0	19	33	0	0	21	33	0	0	21	48	0	0	19	41	0	0	18	37	0	0	16	48	merge_repeat		chromOut
chr13	11919208	T	G	999	11 11 11 11 11 11 11 11	23	0	0	14	16	0	0	15	19	0	0	20	14	1	0	20	22	1	0	19	29	0	0	8	15	1	0	15	16	0	0	7	27	merge_repeat	trfMask	chromOut	simple
chr13	12332020	G	T	999	11 11 11 11 11 11 11 11	21	0	0	5	16	0	0	12	17	0	0	16	18	0	0	15	23	0	0	19	20	0	0	13	16	0	0	12	14	0	0	11	18	merge_repeat		chromOut	simple	nested
chr13	12333594	A	T	999	11 11 11 11 11 11 11 11	25	0	0	13	13	0	0	11	14	0	0	23	9	0	0	18	16	0	0	13	19	0	0	20	15	0	0	11	14	0	0	10	23
chr13	12333599	A	C	999	11 11 11 11 11 11 11 11	27	0	0	17	13	0	0	12	15	0	0	23	9	0	0	18	17	0	0	14	20	0	0	23	17	0	0	12	15	0	0	9	24
chr13	12333602	C	T	999	11 11 11 11 11 11 11 11	26	0	0	16	13	0	0	12	14	0	0	20	8	0	0	16	17	0	0	13	20	0	0	21	16	0	0	12	17	0	0	7	22
chr13	12333614	T	C	999	11 11 11 11 11 11 11 11	27	0	1	17	15	0	0	13	15	0	0	24	11	0	0	21	17	0	0	15	12	0	0	24	21	0	1	12	16	0	1	12	26
chr13	14347777	G	A	999	11 11 11 11 11 11 11 11	56	0	0	33	29	0	0	32	33	0	0	36	43	0	0	26	30	0	0	29	39	0	0	28	30	0	0	40	35	0	1	35	30
chr13	18397021	A	T	999	11 11 11 11 11 11 11 11	44	0	0	17	33	0	0	24	29	0	0	17	41	0	0	25	30	0	0	32	26	1	0	20	23	0	0	20	24	0	0	26	22	merge_repeat		chromOut
chr13	18534898	T	C	999	11 11 11 11 11 11 11 11	31	0	0	13	25	0	0	15	21	0	0	17	14	0	0	10	21	0	0	18	17	0	0	21	24	0	0	13	24	0	0	14	17	merge_repeat		chromOut		nested
chr13	21994174	A	G	999	11 11 11 11 11 11 11 11	49	0	0	35	36	0	0	25	24	0	0	22	37	0	0	31	47	0	0	34	40	0	0	32	41	0	0	27	49	0	0	30	44
chr13	25062941	T	A	999	11 11 11 11 11 11 11 11	53	0	0	39	38	0	0	27	26	0	0	41	25	0	0	35	37	0	0	46	24	0	0	25	35	0	0	26	35	0	0	45	30
chr13	29433637	G	C	999	11 11 11 11 11 11 11 11	59	0	1	27	48	1	0	34	40	0	0	24	35	0	1	43	33	1	0	35	42	0	0	41	31	0	0	28	38	0	1	39	35	merge_repeat	trfMask	chromOut	simple
chr13	32152989	A	G	999	11 11 11 11 11 11 11 11	60	0	0	41	38	0	0	47	35	0	0	45	36	0	0	55	40	0	0	24	36	0	0	31	34	0	0	39	40	0	0	43	34
chr13	33489838	T	A	999	11 11 11 11 11 11 11 11	27	0	0	14	26	0	0	8	29	0	0	16	19	0	0	13	23	0	0	21	24	0	0	12	15	0	0	13	20	0	0	7	29	merge_repeat					segmentDup
chr13	36507093	C	A	999	11 11 11 11 11 11 11 11	47	0	0	24	32	0	0	25	22	0	0	19	34	0	0	25	30	0	0	34	29	0	0	26	27	0	0	26	27	0	0	28	25
chr13	36532758	T	C	999	11 11 11 11 11 11 11 11	27	0	0	15	32	0	0	8	20	0	0	21	10	0	0	12	15	1	0	10	20	0	0	11	29	1	0	14	17	0	0	17	25	merge_repeat		chromOut
chr13	36659122	G	T	999	11 11 11 11 11 11 11 11	50	0	0	25	25	0	0	33	29	0	0	33	30	0	0	26	27	0	0	36	34	0	0	26	26	0	0	34	29	0	0	27	23	merge_repeat		chromOut		nested
chr13	39842141	C	G	999	11 11 11 11 11 11 11 11	24	0	0	7	17	0	0	7	17	0	0	7	18	0	0	9	24	0	0	3	25	0	0	10	16	0	0	10	14	0	1	5	21	merge_repeat	trfMask	chromOut	simple
chr13	39895685	T	A	999	11 11 11 11 11 11 11 11	54	0	0	31	25	0	0	42	28	0	0	35	22	0	0	35	27	0	0	33	30	0	0	31	30	0	0	32	22	0	0	35	29	merge_repeat		chromOut
chr13	40401821	G	A	999	11 11 11 11 11 11 11 11	40	0	0	19	27	0	0	18	22	0	0	18	30	0	0	20	25	0	0	16	40	0	0	24	30	0	0	25	20	0	0	12	29
chr13	40401836	C	A	999	11 11 11 11 11 11 11 11	42	0	0	19	24	0	0	20	25	0	0	17	28	0	0	22	26	0	0	19	40	0	0	23	29	0	0	25	19	0	0	16	26
chr13	40401850	T	A	999	11 11 11 11 11 11 11 11	38	0	0	21	27	0	0	19	24	0	0	20	27	0	0	24	25	0	0	20	38	0	0	23	27	0	0	27	20	0	0	15	23
chr13	40401889	T	A	999	11 11 11 11 11 11 11 11	36	0	0	27	19	0	0	21	20	0	0	20	18	0	0	22	21	0	0	23	26	0	0	26	20	0	0	26	18	0	0	16	20	merge_repeat	trfMask	chromOut	simple
chr13	40652977	A	C	999	11 11 11 11 11 11 11 11	45	0	0	24	38	0	0	26	34	0	0	39	25	0	0	31	25	0	0	18	27	0	0	22	38	0	0	37	36	0	0	20	26
chr13	41320633	A	G	999	11 11 11 11 11 11 11 11	44	0	0	15	29	0	0	21	25	0	0	26	33	0	0	15	34	0	0	24	28	0	0	15	31	0	0	30	32	0	0	29	24
chr13	43667318	T	C	999	11 11 11 11 11 11 11 11	37	0	0	27	18	0	0	26	16	0	0	25	25	0	0	13	24	0	0	20	19	0	0	24	13	0	0	15	22	0	0	25	18
chr13	44615226	C	A	999	11 11 11 11 11 11 11 11	22	0	0	10	22	0	0	11	23	0	0	8	23	0	0	10	32	0	0	9	18	0	0	4	18	0	0	4	19	0	0	5	23	merge_repeat	trfMask	chromOut	simple
chr13	44615314	T	G	999	11 11 11 11 11 11 11 11	26	0	0	8	21	0	0	16	16	0	0	21	25	0	0	16	21	0	0	9	17	0	0	10	20	0	0	9	17	0	0	11	23	merge_repeat		chromOut
chr13	44615321	A	G	999	11 11 11 11 11 11 11 11	26	0	0	8	21	0	0	14	16	0	0	21	24	0	0	16	20	0	0	9	17	0	0	10	19	0	0	9	17	0	0	11	22	merge_repeat		chromOut
chr13	45395035	A	T	999	11 11 11 11 11 11 11 11	29	0	0	22	15	0	0	33	21	0	0	26	15	0	0	29	24	0	0	23	30	0	0	25	22	0	0	20	24	0	0	17	12
chr13	45395043	A	G	999	11 11 11 11 11 11 11 11	28	0	0	21	16	0	0	33	19	0	0	28	17	0	0	32	25	0	0	24	31	0	0	27	22	0	0	21	25	0	0	17	11
chr13	46486085	T	G	999	11 11 11 11 11 11 11 11	28	0	0	10	20	0	0	20	22	0	0	15	26	0	0	30	22	0	0	24	21	0	0	18	29	0	0	8	20	0	0	15	30	merge_repeat		chromOut
chr13	46983506	T	C	999	11 11 11 11 11 11 11 11	21	0	0	16	16	0	0	21	12	0	0	9	12	0	0	13	12	0	0	19	14	0	0	18	14	0	0	8	20	0	0	19	9	merge_repeat	trfMask	chromOut	simple
chr13	46983507	A	T	999	11 11 11 11 11 11 11 11	21	0	0	15	15	0	0	21	12	0	0	9	12	0	0	13	12	0	0	19	13	0	0	18	13	0	0	8	19	0	0	19	9	merge_repeat	trfMask	chromOut	simple
chr13	46983516	A	T	999	11 11 11 11 11 11 11 11	27	1	0	16	17	0	0	23	16	0	0	8	19	0	0	12	20	0	0	22	23	0	0	18	27	0	0	8	20	0	0	20	12	merge_repeat	trfMask	chromOut	simple
chr13	46994762	C	A	999	11 11 11 11 11 11 11 11	23	0	0	5	19	0	0	7	21	0	0	9	25	0	0	11	38	0	0	7	28	0	0	8	21	1	0	6	26	0	0	11	12
chr13	47030978	A	G	999	11 11 11 11 11 11 11 11	33	0	0	26	25	0	0	25	21	0	0	31	25	0	0	20	34	0	0	23	35	0	0	22	27	0	0	27	13	0	0	18	15
chr13	47405773	A	G	999	11 11 11 11 11 11 11 11	53	0	0	29	24	0	0	41	26	0	0	25	28	0	0	29	29	0	0	30	31	0	0	37	29	0	0	28	37	0	0	34	24
chr13	47765971	T	C	999	11 11 11 11 11 11 11 11	46	0	0	26	30	0	0	30	33	0	0	35	35	0	0	44	42	0	0	51	34	0	0	27	19	0	0	32	39	0	0	30	29
chr13	48728214	G	C	999	11 11 11 11 11 11 11 11	29	0	0	15	19	0	0	20	11	0	0	15	23	0	0	13	21	0	0	12	21	0	0	11	18	0	0	14	18	0	0	22	20	merge_repeat	trfMask	chromOut	simple
chr13	48728236	G	A	999	11 11 11 11 11 11 11 11	26	0	0	18	17	0	0	17	9	0	0	19	14	0	0	11	16	0	0	16	19	0	0	14	15	0	0	13	17	0	0	18	16	merge_repeat	trfMask	chromOut	simple
chr13	48728376	G	C	999	11 11 11 11 11 11 11 11	22	0	0	15	7	0	0	17	9	0	0	13	10	0	0	26	9	0	0	27	8	0	0	16	8	0	0	19	8	0	0	15	8	merge_repeat	trfMask	chromOut	simple
chr13	48785519	C	T	999	11 11 11 11 11 11 11 11	21	0	0	18	10	0	0	12	12	0	0	19	8	0	0	15	11	0	0	20	8	0	0	21	5	0	0	14	7	0	0	17	15	merge_repeat	trfMask	chromOut	simple	nested
chr13	49923137	C	G	999	11 11 11 11 11 11 11 11	20	0	0	10	10	0	0	11	17	0	0	11	16	0	0	12	28	0	0	16	26	0	0	15	9	0	0	16	15	0	0	13	17	merge_repeat		chromOut		nested
chr13	49957938	A	G	999	11 11 11 11 11 11 11 11	43	0	0	17	28	0	0	24	27	0	0	27	16	0	0	24	25	0	0	31	26	0	0	19	30	0	0	23	23	0	0	26	23	merge_repeat		chromOut			segmentDup
chr13	49988088	C	A	999	11 11 11 11 11 11 11 11	28	0	0	15	19	0	0	13	15	0	0	18	17	0	0	24	9	0	0	23	15	0	0	13	17	0	0	21	9	0	0	21	12
chr13	50290175	T	C	999	11 11 11 11 11 11 11 11	46	0	0	30	28	0	0	30	26	0	0	22	36	0	0	23	45	0	0	25	30	0	0	19	29	0	0	34	28	0	0	26	20	merge_repeat					segmentDup
chr13	51373536	G	A	999	11 11 11 11 11 11 11 11	42	0	0	23	19	0	0	33	15	0	0	31	19	0	0	34	28	0	0	40	16	0	0	34	11	0	0	24	19	0	0	33	12
chr13	51400875	G	A	999	11 11 11 11 11 11 11 11	33	0	0	26	14	0	0	25	12	0	0	25	13	0	0	36	18	0	0	33	19	0	0	17	16	0	0	18	26	0	0	24	23
chr13	51400879	T	C	999	11 11 11 11 11 11 11 11	33	0	0	27	14	0	0	24	11	0	0	25	13	0	0	36	20	0	0	33	17	0	0	19	14	0	0	18	25	0	0	26	20
chr13	52591961	G	T	999	11 11 11 11 11 11 11 11	22	0	0	9	14	0	0	10	15	0	0	10	18	0	0	15	20	0	0	11	35	0	0	12	19	0	0	6	26	0	0	10	12
chr13	53117204	C	T	999	11 11 11 11 11 11 11 11	42	0	0	21	21	0	0	39	21	0	0	26	23	0	0	32	29	0	0	29	30	0	0	39	30	0	0	30	20	0	0	34	23
chr13	53270184	T	G	999	11 11 11 11 11 11 11 11	31	0	0	36	19	0	0	26	10	0	0	19	13	0	0	18	13	0	0	23	14	0	0	27	17	0	1	26	16	0	0	24	17	merge_repeat		chromOut
chr13	54070261	A	G	999	11 11 11 11 11 11 11 11	43	0	0	22	37	0	0	20	29	0	0	22	26	0	0	22	38	0	0	27	29	0	0	20	27	0	0	25	18	1	0	25	19
chr13	54070264	T	G	999	11 11 11 11 11 11 11 11	43	0	0	21	36	0	0	20	29	0	0	22	25	0	0	22	38	0	0	27	30	0	0	20	27	0	0	25	18	0	0	25	18
chr13	54730843	T	C	999	11 11 11 11 11 11 11 11	40	0	0	26	34	0	0	39	23	0	0	22	18	0	0	34	30	0	0	32	30	0	0	24	32	0	0	21	25	0	0	25	26	merge_repeat		chromOut
chr13	54830724	G	A	999	11 11 11 11 11 11 11 11	28	0	0	17	18	0	0	23	28	0	0	15	25	0	0	13	15	0	0	32	17	0	0	17	18	0	0	19	14	0	0	15	16	merge_repeat		chromOut		nested
chr13	54830777	T	C	999	11 11 11 11 11 11 11 11	22	0	0	11	14	0	0	13	20	0	0	14	18	0	0	18	7	0	0	26	13	0	0	10	12	0	0	12	12	0	0	15	15
chr13	54830798	T	C	999	11 11 11 11 11 11 11 11	22	0	0	15	12	0	0	11	18	0	0	15	15	0	0	24	8	0	0	27	11	0	0	14	12	0	0	11	11	0	0	20	14
chr13	54830828	C	G	999	11 11 11 11 11 11 11 11	22	0	0	21	11	0	0	13	11	0	0	15	8	1	0	22	7	0	0	24	9	0	1	17	9	1	0	13	8	0	0	19	10	merge_repeat	trfMask	chromOut	simple
chr13	54893207	G	T	999	11 11 11 11 11 11 11 11	44	0	0	30	41	0	0	32	27	0	0	39	19	0	0	24	32	0	0	24	22	0	0	34	31	0	0	22	34	0	0	25	19	merge_repeat	trfMask		simple	nested
chr13	57316434	C	G	999	11 11 11 11 11 11 11 11	34	0	0	17	26	0	0	27	22	0	0	20	22	0	0	39	19	0	0	27	28	0	0	22	12	0	0	17	28	0	0	22	22
chr13	58416905	A	G	999	11 11 11 11 11 11 11 11	44	0	0	31	34	0	0	37	25	0	0	30	24	0	0	41	26	0	0	29	26	0	0	27	17	0	0	27	27	0	0	25	20	merge_repeat		chromOut		nested
chr13	58889794	G	A	999	11 11 11 11 11 11 11 11	57	0	0	38	35	0	0	31	37	0	0	30	40	0	0	28	36	0	0	27	40	0	0	29	28	0	0	31	41	0	0	31	30	merge_repeat		chromOut		nested
chr13	59113344	A	T	999	11 11 11 11 11 11 11 11	40	0	0	20	30	0	0	19	21	0	0	20	27	0	0	20	22	0	0	37	28	0	0	29	13	0	0	23	21	0	0	21	19
chr13	59113389	G	A	999	11 11 11 11 11 11 11 11	40	0	0	24	29	0	0	22	21	0	0	28	23	0	0	27	17	0	0	30	24	0	0	30	12	0	0	25	20	0	0	26	14
chr13	59249646	C	A	999	11 11 11 11 11 11 11 11	42	0	0	28	14	0	1	29	14	0	0	32	17	0	0	36	16	1	1	26	24	1	1	27	16	1	2	25	18	0	0	29	19	merge_repeat	trfMask	chromOut	simple	nested
chr13	59404285	C	T	999	11 11 11 11 11 11 11 11	29	0	0	19	11	0	0	19	10	0	0	20	12	0	0	17	18	0	0	22	16	0	0	20	11	0	0	17	14	0	0	19	12	merge_repeat		chromOut		nested
chr13	59404289	C	T	999	11 11 11 11 11 11 11 11	29	0	0	19	11	0	0	19	10	0	0	20	13	0	0	17	18	0	0	22	16	0	0	20	12	0	0	17	14	0	0	19	12	merge_repeat		chromOut		nested
chr13	59404296	G	A	999	11 11 11 11 11 11 11 11	34	0	0	21	13	0	0	24	10	0	0	21	13	0	1	19	17	0	0	25	19	0	0	25	15	0	0	21	14	0	0	22	12	merge_repeat		chromOut		nested
chr13	59404300	C	T	999	11 11 11 11 11 11 11 11	34	0	0	21	14	0	0	24	10	0	0	21	13	0	0	19	18	0	0	25	19	0	0	27	15	0	0	21	14	0	0	23	11	merge_repeat		chromOut		nested
chr13	59477646	T	C	999	11 11 11 11 11 11 11 11	46	0	0	26	24	0	0	21	25	0	0	30	21	0	0	24	31	0	0	26	36	0	0	29	27	0	0	30	29	0	0	24	22
chr13	60559015	G	A	999	11 11 11 11 11 11 11 11	60	0	0	23	37	0	1	39	40	0	0	37	36	0	0	38	34	0	0	32	40	0	0	28	42	0	0	41	37	0	0	28	32
chr13	60663761	T	A	999	11 11 11 11 11 11 11 11	26	0	0	11	15	0	1	17	20	0	0	18	11	0	0	11	17	0	0	17	20	0	0	16	11	0	1	17	22	0	0	20	12	merge_repeat			simple
chr13	60970840	A	T	999	11 11 11 11 11 11 11 11	41	0	0	26	23	0	0	20	34	0	0	29	24	0	0	23	22	0	0	26	26	0	0	18	23	0	0	30	33	0	0	24	21	merge_repeat		chromOut
chr13	60970886	T	G	999	11 11 11 11 11 11 11 11	32	0	0	25	23	0	0	25	30	0	0	28	22	0	0	24	17	0	0	19	24	0	0	13	19	0	0	19	24	0	0	17	19	merge_repeat		chromOut
chr13	60970916	G	C	999	11 11 11 11 11 11 11 11	31	0	0	21	23	0	0	26	31	0	0	29	20	0	0	24	14	0	0	18	24	0	0	14	17	0	0	20	27	0	0	16	16	merge_repeat		chromOut
chr13	60970918	G	A	999	11 11 11 11 11 11 11 11	31	1	0	20	23	0	0	26	31	0	0	29	19	0	0	24	14	0	0	18	24	0	0	14	17	0	0	20	27	1	0	15	15	merge_repeat		chromOut
chr13	60971359	T	C	999	11 11 11 11 11 11 11 11	34	0	0	29	21	0	0	15	22	0	0	21	24	0	0	30	24	0	0	32	23	0	0	15	19	0	0	22	25	0	0	22	28	merge_repeat		chromOut
chr13	62071254	C	G	999	11 11 11 11 11 11 11 11	47	0	0	41	34	0	0	30	48	0	0	36	25	0	0	23	24	0	0	43	30	0	0	35	36	0	0	26	41	0	0	38	32	merge_repeat		chromOut		nested	segmentDup
chr13	62579453	T	A	999	11 11 11 11 11 11 11 11	63	0	0	39	32	0	0	37	27	0	0	43	37	0	0	41	28	0	0	41	22	0	0	43	33	0	0	34	32	0	0	43	36	merge_repeat					segmentDup
chr13	65972562	C	T	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	25	2	0	0	20	12	0	0	26	14	0	0	21	17	0	0	22	15	0	0	20	15	0	0	21	8	merge_repeat		chromOut	simple		segmentDup
chr13	66602371	C	A	999	11 11 11 11 11 11 11 11	46	0	0	17	29	0	0	37	34	0	0	27	39	0	0	44	29	0	0	26	25	0	0	26	29	0	0	30	27	0	0	31	28	merge_repeat		chromOut			segmentDup
chr13	66671055	T	A	453	11 11 11 11 11 11 11 11	21	0	0	4	27	0	0	1	26	0	0	7	20	0	1	7	26	0	0	6	15	0	0	2	24	0	0	5	18	0	1	6	29	merge_repeat		chromOut	simple		segmentDup
chr13	66874762	C	A	999	11 11 11 11 11 11 11 11	24	0	0	19	15	1	0	12	12	1	0	13	18	0	0	21	15	0	0	16	17	0	0	17	14	0	0	12	23	0	0	15	9	merge_repeat	trfMask	chromOut	simple
chr13	66874772	C	A	999	11 11 11 11 11 11 11 11	25	0	0	21	14	0	0	13	12	1	0	10	21	0	0	18	15	0	0	16	18	0	0	16	16	0	0	12	22	0	0	16	9	merge_repeat	trfMask	chromOut	simple
chr13	67288706	A	G	999	11 11 11 11 11 11 11 11	59	0	0	36	36	0	0	27	35	0	0	28	40	0	0	32	30	0	0	36	23	0	0	33	27	0	0	29	31	0	0	37	39	merge_repeat		chromOut		nested
chr13	67352355	T	C	999	11 11 11 11 11 11 11 11	54	0	0	38	31	0	0	45	49	0	0	39	30	0	0	31	27	0	0	28	38	0	0	28	26	0	0	31	38	0	0	31	40	merge_repeat		chromOut		nested
chr13	69404836	T	C	999	11 11 11 11 11 11 11 11	54	0	0	26	28	0	0	39	32	0	0	31	35	0	0	35	38	0	0	25	34	0	0	33	28	0	0	37	23	0	0	28	30	merge_repeat		chromOut
chr13	69441736	A	C	999	11 11 11 11 11 11 11 11	50	0	0	28	43	0	0	28	40	0	0	29	31	0	0	30	42	0	0	32	37	0	0	23	27	0	0	32	41	0	0	24	30
chr13	70093953	A	T	999	11 11 11 11 11 11 11 11	21	1	0	11	15	0	0	12	13	0	0	8	14	0	0	11	13	0	0	15	28	0	0	15	13	0	0	9	16	0	0	6	15
chr13	70093964	C	G	999	11 11 11 11 11 11 11 11	26	0	0	17	17	0	0	13	14	0	0	10	16	0	0	12	15	0	0	16	27	0	0	17	12	0	0	11	17	0	0	9	17
chr13	71720169	A	G	999	11 11 11 11 11 11 11 11	60	0	0	39	27	0	0	44	31	0	0	62	36	0	0	20	40	0	0	41	32	0	0	28	39	0	0	29	37	0	0	30	36	merge_repeat		chromOut
chr13	74093729	T	G	999	11 11 11 11 11 11 11 11	32	0	0	5	27	0	0	8	29	0	0	10	38	0	0	14	36	0	0	16	34	0	0	9	35	0	0	11	44	0	0	5	43	merge_repeat		chromOut		nested
chr13	76719728	C	T	621	11 11 11 11 11 11 11 11	29	0	0	18	16	0	0	14	17	0	0	17	18	0	0	15	17	0	0	13	16	0	0	16	14	0	0	28	18	0	0	17	24	merge_repeat		chromOut
chr13	77429321	C	T	999	11 11 11 11 11 11 11 11	32	0	0	17	34	0	0	17	27	0	0	14	30	0	0	19	29	0	0	19	20	0	0	13	19	0	0	21	23	0	0	13	33	merge_repeat		chromOut		nested
chr13	77643877	G	A	999	11 11 11 11 11 11 11 11	38	0	1	27	19	0	0	24	27	0	0	24	29	0	0	25	19	0	0	25	13	0	0	23	30	0	0	24	18	0	0	20	25	merge_repeat		chromOut		nested
chr13	80970893	T	C	999	11 11 11 11 11 11 11 11	32	0	0	23	30	0	0	27	27	0	0	13	19	0	0	28	18	0	0	27	28	0	0	19	21	0	0	18	20	0	0	26	20	merge_repeat		chromOut
chr13	81182333	G	A	999	11 11 11 11 11 11 11 11	48	0	0	22	32	0	0	27	23	0	0	24	30	0	0	29	32	0	0	19	31	0	0	34	29	0	0	26	22	0	0	24	24
chr13	81473650	T	A	999	11 11 11 11 11 11 11 11	20	0	0	4	24	0	0	5	24	0	0	3	25	0	0	3	29	0	0	6	15	0	0	3	21	0	0	3	22	0	0	6	14	merge_repeat			simple
chr13	83102962	T	G	999	11 11 11 11 11 11 11 11	50	0	0	36	20	0	0	36	30	0	0	33	37	0	0	43	28	0	0	29	38	0	0	25	25	0	0	27	35	0	0	36	23
chr13	83379076	C	A	999	11 11 11 11 11 11 11 11	20	0	0	18	15	0	0	19	9	0	0	11	9	0	0	18	12	0	0	13	11	0	0	12	12	0	0	22	14	0	0	19	3	merge_repeat	trfMask	chromOut	simple
chr13	85549193	G	C	999	11 11 11 11 11 11 11 11	49	0	0	26	28	0	0	36	40	0	0	27	38	0	0	30	39	0	0	16	39	0	0	35	33	0	0	23	26	0	0	20	36	merge_repeat		chromOut		nested
chr13	86176766	C	A	999	11 11 11 11 11 11 11 11	24	0	0	12	14	0	0	10	25	0	0	12	20	0	0	8	24	0	0	11	26	0	0	12	24	0	0	7	17	0	0	9	20
chr13	86513166	T	C	999	11 11 11 11 11 11 11 11	46	0	0	23	23	0	0	29	21	0	0	32	29	0	0	24	24	0	0	29	22	0	0	24	27	0	0	40	29	0	0	29	27	merge_repeat		chromOut
chr13	90575815	T	G	999	11 11 11 11 11 11 11 11	50	0	0	34	43	0	0	23	39	0	0	32	29	0	0	48	39	0	0	34	30	0	0	24	26	0	0	35	31	0	0	33	27
chr13	91176567	T	C	999	11 11 11 11 11 11 11 11	46	0	0	30	44	0	0	19	30	0	0	20	26	0	0	28	42	0	0	39	29	0	0	21	29	0	0	27	35	0	0	19	35	merge_repeat				nested
chr13	91177224	A	G	999	11 11 11 11 11 11 11 11	44	0	0	30	26	0	0	31	34	0	0	36	26	0	0	30	35	0	0	29	27	0	0	33	23	0	0	25	28	0	0	21	23
chr13	91358269	A	T	999	11 11 11 11 11 11 11 11	21	0	0	6	15	0	0	7	18	0	0	11	17	0	0	18	20	0	0	10	21	0	0	12	18	0	0	13	14	0	0	8	17	merge_repeat	trfMask	chromOut	simple
chr13	91358423	C	A	999	11 11 11 11 11 11 11 11	28	0	0	11	27	0	0	7	34	0	0	11	29	0	0	9	33	0	0	19	30	0	0	11	28	0	0	11	24	0	0	8	20
chr13	91995859	A	T	999	11 11 11 11 11 11 11 11	36	0	0	16	32	0	0	11	25	0	0	22	39	0	0	23	42	0	0	30	41	0	0	25	28	0	0	21	36	0	0	24	20
chr13	93191709	T	C	999	11 11 11 11 11 11 11 11	46	0	0	23	23	0	0	27	31	0	0	23	35	0	0	28	40	0	0	25	33	0	0	23	36	0	0	19	31	0	0	23	34
chr13	93612815	A	C	999	11 11 11 11 11 11 11 11	49	0	0	23	26	0	0	30	25	0	0	29	31	0	0	24	38	0	0	26	33	0	0	26	25	0	0	24	35	0	0	22	28
chr13	93616691	T	C	999	11 11 11 11 11 11 11 11	29	0	0	17	18	0	0	20	19	0	0	22	15	0	0	18	15	0	0	20	20	0	0	11	18	0	0	22	20	0	0	23	13
chr13	93842278	G	T	999	11 11 11 11 11 11 11 11	20	0	0	13	7	0	0	11	10	0	0	14	13	0	0	16	17	0	0	21	12	0	0	16	14	0	0	14	11	0	0	10	17	merge_repeat	trfMask	chromOut	simple	nested
chr13	93842285	G	T	999	11 11 11 11 11 11 11 11	24	0	0	14	11	0	0	11	13	0	0	16	16	0	0	16	19	0	0	22	16	0	0	16	15	0	0	15	13	0	0	9	17	merge_repeat	trfMask	chromOut	simple	nested
chr13	93842297	G	T	999	11 11 11 11 11 11 11 11	28	0	0	11	17	0	0	17	15	0	0	11	18	0	0	18	21	0	0	20	19	0	0	19	18	0	0	23	17	0	0	15	23	merge_repeat	trfMask	chromOut	simple	nested
chr13	93842311	A	T	999	11 11 11 11 11 11 11 11	33	0	0	13	23	0	0	23	19	0	0	10	23	0	0	18	23	0	0	23	23	0	0	25	16	0	0	25	24	0	0	17	27	merge_repeat	trfMask		simple	nested
chr13	93918354	T	C	999	11 11 11 11 11 11 11 11	54	0	0	33	26	0	0	25	33	0	0	26	28	0	0	41	47	0	0	32	33	0	0	29	27	0	0	26	28	0	0	28	33
chr13	95076607	A	G	999	11 11 11 11 11 11 11 11	41	0	0	33	29	0	0	16	25	0	0	20	34	0	0	31	34	0	0	33	35	0	0	29	36	0	0	24	31	0	0	17	35
chr13	95133961	C	T	999	11 11 11 11 11 11 11 11	48	0	0	49	32	0	0	26	26	0	0	39	30	0	0	30	32	0	0	33	32	0	0	22	26	0	0	34	36	0	0	33	22
chr13	99250080	T	G	999	11 11 11 11 11 11 11 11	56	0	0	32	33	0	0	35	39	0	0	24	32	0	0	23	33	0	0	38	34	0	0	30	36	0	0	29	29	0	0	23	37	merge_repeat			simple
chr13	105378915	G	A	999	11 11 11 11 11 11 11 11	48	0	0	28	25	0	1	37	19	0	0	28	33	0	0	29	28	1	0	20	33	0	0	26	22	0	0	22	31	0	0	24	29	merge_repeat		chromOut		nested
chr13	105707756	A	G	999	11 11 11 11 11 11 11 11	42	0	0	23	27	0	0	26	34	0	0	23	26	0	0	23	23	0	0	23	26	0	0	19	23	0	0	31	23	0	0	23	20
chr13	107071069	C	G	999	11 11 11 11 11 11 11 11	32	0	0	13	19	0	0	17	19	0	0	18	21	0	0	26	25	0	0	16	20	0	0	22	20	0	0	15	18	0	0	17	26	merge_repeat		chromOut		nested
chr13	107662170	A	T	999	11 11 11 11 11 11 11 11	21	0	0	11	10	0	0	14	17	0	0	21	25	0	0	13	17	0	0	11	27	0	0	14	23	0	0	12	31	0	0	15	20	merge_repeat	trfMask	chromOut	simple	nested
chr13	107782219	T	G	999	11 11 11 11 11 11 11 11	33	0	0	27	28	0	0	24	23	0	0	22	25	0	0	25	27	0	0	15	34	0	0	25	19	0	0	12	21	0	0	26	25	merge_repeat	trfMask	chromOut	simple
chr13	107892491	A	G	999	11 11 11 11 11 11 11 11	45	0	0	19	26	0	1	14	35	0	0	21	25	0	0	19	30	0	0	31	27	0	0	23	27	0	0	26	32	0	0	25	25
chr13	109553776	C	T	999	11 11 11 11 11 11 11 11	23	0	1	18	10	0	0	17	17	0	0	11	12	0	0	15	9	0	0	19	21	0	0	18	14	1	0	13	17	0	0	18	12	merge_repeat	trfMask	chromOut	simple
chr13	111055255	G	C	999	11 11 11 11 11 11 11 11	44	0	0	27	39	0	0	28	26	0	0	15	32	0	0	20	24	0	0	20	27	0	0	26	33	0	0	26	29	0	0	30	23	merge_repeat		chromOut
chr13	111713407	G	A	999	11 11 11 11 11 11 11 11	59	0	0	48	29	0	0	37	39	0	0	27	32	0	0	38	26	0	0	36	34	0	0	40	32	0	0	49	29	0	0	36	24
chr13	112000615	A	G	999	11 11 11 11 11 11 11 11	40	0	0	19	21	0	0	21	28	0	0	19	29	0	0	25	30	0	0	21	41	0	0	19	38	0	0	19	33	0	0	19	23	merge_repeat		chromOut
chr13	112500925	C	T	999	11 11 11 11 11 11 11 11	49	0	0	17	32	0	0	28	27	0	0	23	33	0	0	31	26	0	0	33	32	0	0	21	33	0	0	22	33	0	0	27	30
chr13	112513187	G	A	999	11 11 11 11 11 11 11 11	52	0	0	25	29	0	0	23	36	0	0	29	35	0	0	24	28	0	0	28	38	0	0	29	26	0	0	39	28	0	0	16	37
chr13	112513626	A	G	999	11 11 11 11 11 11 11 11	41	0	0	13	32	0	0	21	36	0	0	25	17	0	0	26	35	0	0	42	22	0	0	20	21	0	0	15	29	0	0	22	41
chr13	112539526	A	T	999	11 11 11 11 11 11 11 11	51	0	0	25	26	0	0	30	25	0	0	38	23	0	1	32	29	0	0	35	32	0	0	31	30	0	0	37	23	0	0	32	24	merge_repeat		chromOut		nested
chr13	113340574	A	G	999	11 11 11 11 11 11 11 11	20	0	0	18	20	0	0	22	24	0	0	16	18	0	0	8	31	0	0	22	28	0	0	11	24	0	0	18	25	0	0	13	7
chr13	113982475	T	C	999	11 11 11 11 11 11 11 11	45	0	0	30	21	0	0	34	31	0	0	32	31	0	0	32	24	0	0	38	32	0	0	32	23	0	0	15	30	0	0	31	29
chr13	119457151	G	T	999	11 11 11 11 11 11 11 11	21	0	0	5	29	0	0	13	19	0	0	14	18	0	0	13	25	0	0	12	19	0	0	8	13	0	0	17	25	0	0	17	14
chr13	120037574	C	G	999	11 11 11 11 11 11 11 11	22	0	0	18	13	0	0	14	11	0	0	18	16	0	0	26	16	0	0	19	14	0	0	12	10	0	0	16	12	0	0	21	16	merge_repeat					segmentDup