chr position ref alt quality samtools_GT_RAW min_depth 1RF 1RR 1AF 1AR 2RF 2RR 2AF 2AR 3RF 3RR 3AF 3AR 4RF 4RR 4AF 4AR 5RF 5RR 5AF 5AR 6RF 6RR 6AF 6AR 7RF 7RR 7AF 7AR 8RF 8RR 8AF 8AR merge_repeat trfMask chromOut simple nested segmentDup
chr13 4104651 G T 999 11 11 11 11 11 11 11 11 33 0 0 14 22 0 0 23 23 0 0 19 29 0 0 19 24 0 0 22 22 0 0 18 23 0 0 22 21 0 0 14 19 merge_repeat chromOut nested
chr13 5332485 A G 999 11 11 11 11 11 11 11 11 39 0 0 30 24 0 0 24 15 0 0 22 25 0 0 27 20 0 0 22 22 0 0 23 31 0 0 18 22 0 0 27 21 merge_repeat chromOut
chr13 6246279 G T 999 11 11 11 11 11 11 11 11 23 0 0 10 13 0 0 8 18 0 0 11 24 0 0 10 19 0 0 15 16 0 0 14 12 0 0 9 17 0 0 13 15 @
chr13 7251569 A G 999 11 11 11 11 11 11 11 11 60 0 1 28 34 0 0 28 39 0 0 26 39 0 0 34 27 0 0 38 30 0 0 30 42 0 0 27 36 0 0 32 28 merge_repeat chromOut nested
chr13 7251571 A G 999 11 11 11 11 11 11 11 11 60 0 0 28 34 0 0 28 40 0 0 26 38 0 0 34 27 0 0 38 30 0 0 30 42 0 0 27 36 0 0 32 28 merge_repeat chromOut nested
chr13 7739815 G C 999 11 11 11 11 11 11 11 11 61 0 0 27 43 0 0 44 44 0 0 35 28 0 0 34 38 0 0 35 45 0 0 35 34 0 0 36 44 0 0 28 33 merge_repeat chromOut nested
chr13 8329293 T A 999 11 11 11 11 11 11 11 11 20 0 0 6 20 0 0 5 26 0 0 9 29 0 0 4 33 0 0 4 27 0 0 3 17 0 0 5 24 0 0 5 25 merge_repeat chromOut
chr13 8406416 T C 999 11 11 11 11 11 11 11 11 46 0 0 31 21 0 0 39 32 0 0 28 18 0 0 35 39 0 0 33 36 0 0 32 25 0 0 26 32 0 0 23 33 @
chr13 8436373 T C 999 11 11 11 11 11 11 11 11 31 0 0 38 17 0 0 41 8 0 0 21 10 0 0 44 25 0 0 33 18 0 0 44 18 0 0 30 17 0 0 37 19 @
chr13 8436508 T C 999 11 11 11 11 11 11 11 11 38 0 0 29 9 0 0 47 11 0 0 31 9 0 0 32 12 0 0 24 20 0 0 36 29 0 0 43 9 0 0 39 7 @
chr13 8436542 G C 999 11 11 11 11 11 11 11 11 39 0 0 38 9 0 0 50 12 0 0 28 11 0 0 41 18 0 0 24 27 0 0 27 25 0 0 43 10 0 0 34 8 @
chr13 9327347 A T 999 11 11 11 11 11 11 11 11 47 0 0 44 29 0 0 41 37 0 0 28 19 0 0 41 28 0 0 46 34 1 0 29 24 0 0 34 30 0 0 33 25 merge_repeat simple
chr13 11434434 A G 999 11 11 11 11 11 11 11 11 46 0 0 25 22 0 0 31 16 0 0 26 23 0 0 29 35 0 0 27 37 0 0 23 28 0 0 22 24 0 0 25 23 merge_repeat chromOut
chr13 11572901 C G 999 11 11 11 11 11 11 11 11 36 0 0 12 24 0 0 23 41 0 0 19 33 0 0 21 33 0 0 21 48 0 0 19 41 0 0 18 37 0 0 16 48 merge_repeat chromOut
chr13 11919208 T G 999 11 11 11 11 11 11 11 11 23 0 0 14 16 0 0 15 19 0 0 20 14 1 0 20 22 1 0 19 29 0 0 8 15 1 0 15 16 0 0 7 27 merge_repeat trfMask chromOut simple
chr13 12332020 G T 999 11 11 11 11 11 11 11 11 21 0 0 5 16 0 0 12 17 0 0 16 18 0 0 15 23 0 0 19 20 0 0 13 16 0 0 12 14 0 0 11 18 merge_repeat chromOut simple nested
chr13 12333594 A T 999 11 11 11 11 11 11 11 11 25 0 0 13 13 0 0 11 14 0 0 23 9 0 0 18 16 0 0 13 19 0 0 20 15 0 0 11 14 0 0 10 23 @
chr13 12333599 A C 999 11 11 11 11 11 11 11 11 27 0 0 17 13 0 0 12 15 0 0 23 9 0 0 18 17 0 0 14 20 0 0 23 17 0 0 12 15 0 0 9 24 @
chr13 12333602 C T 999 11 11 11 11 11 11 11 11 26 0 0 16 13 0 0 12 14 0 0 20 8 0 0 16 17 0 0 13 20 0 0 21 16 0 0 12 17 0 0 7 22 @
chr13 12333614 T C 999 11 11 11 11 11 11 11 11 27 0 1 17 15 0 0 13 15 0 0 24 11 0 0 21 17 0 0 15 12 0 0 24 21 0 1 12 16 0 1 12 26 @
chr13 14347777 G A 999 11 11 11 11 11 11 11 11 56 0 0 33 29 0 0 32 33 0 0 36 43 0 0 26 30 0 0 29 39 0 0 28 30 0 0 40 35 0 1 35 30 @
chr13 18397021 A T 999 11 11 11 11 11 11 11 11 44 0 0 17 33 0 0 24 29 0 0 17 41 0 0 25 30 0 0 32 26 1 0 20 23 0 0 20 24 0 0 26 22 merge_repeat chromOut
chr13 18534898 T C 999 11 11 11 11 11 11 11 11 31 0 0 13 25 0 0 15 21 0 0 17 14 0 0 10 21 0 0 18 17 0 0 21 24 0 0 13 24 0 0 14 17 merge_repeat chromOut nested
chr13 21994174 A G 999 11 11 11 11 11 11 11 11 49 0 0 35 36 0 0 25 24 0 0 22 37 0 0 31 47 0 0 34 40 0 0 32 41 0 0 27 49 0 0 30 44 @
chr13 25062941 T A 999 11 11 11 11 11 11 11 11 53 0 0 39 38 0 0 27 26 0 0 41 25 0 0 35 37 0 0 46 24 0 0 25 35 0 0 26 35 0 0 45 30 @
chr13 29433637 G C 999 11 11 11 11 11 11 11 11 59 0 1 27 48 1 0 34 40 0 0 24 35 0 1 43 33 1 0 35 42 0 0 41 31 0 0 28 38 0 1 39 35 merge_repeat trfMask chromOut simple
chr13 32152989 A G 999 11 11 11 11 11 11 11 11 60 0 0 41 38 0 0 47 35 0 0 45 36 0 0 55 40 0 0 24 36 0 0 31 34 0 0 39 40 0 0 43 34 @
chr13 33489838 T A 999 11 11 11 11 11 11 11 11 27 0 0 14 26 0 0 8 29 0 0 16 19 0 0 13 23 0 0 21 24 0 0 12 15 0 0 13 20 0 0 7 29 merge_repeat segmentDup
chr13 36507093 C A 999 11 11 11 11 11 11 11 11 47 0 0 24 32 0 0 25 22 0 0 19 34 0 0 25 30 0 0 34 29 0 0 26 27 0 0 26 27 0 0 28 25 @
chr13 36532758 T C 999 11 11 11 11 11 11 11 11 27 0 0 15 32 0 0 8 20 0 0 21 10 0 0 12 15 1 0 10 20 0 0 11 29 1 0 14 17 0 0 17 25 merge_repeat chromOut
chr13 36659122 G T 999 11 11 11 11 11 11 11 11 50 0 0 25 25 0 0 33 29 0 0 33 30 0 0 26 27 0 0 36 34 0 0 26 26 0 0 34 29 0 0 27 23 merge_repeat chromOut nested
chr13 39842141 C G 999 11 11 11 11 11 11 11 11 24 0 0 7 17 0 0 7 17 0 0 7 18 0 0 9 24 0 0 3 25 0 0 10 16 0 0 10 14 0 1 5 21 merge_repeat trfMask chromOut simple
chr13 39895685 T A 999 11 11 11 11 11 11 11 11 54 0 0 31 25 0 0 42 28 0 0 35 22 0 0 35 27 0 0 33 30 0 0 31 30 0 0 32 22 0 0 35 29 merge_repeat chromOut
chr13 40401821 G A 999 11 11 11 11 11 11 11 11 40 0 0 19 27 0 0 18 22 0 0 18 30 0 0 20 25 0 0 16 40 0 0 24 30 0 0 25 20 0 0 12 29 @
chr13 40401836 C A 999 11 11 11 11 11 11 11 11 42 0 0 19 24 0 0 20 25 0 0 17 28 0 0 22 26 0 0 19 40 0 0 23 29 0 0 25 19 0 0 16 26 @
chr13 40401850 T A 999 11 11 11 11 11 11 11 11 38 0 0 21 27 0 0 19 24 0 0 20 27 0 0 24 25 0 0 20 38 0 0 23 27 0 0 27 20 0 0 15 23 @
chr13 40401889 T A 999 11 11 11 11 11 11 11 11 36 0 0 27 19 0 0 21 20 0 0 20 18 0 0 22 21 0 0 23 26 0 0 26 20 0 0 26 18 0 0 16 20 merge_repeat trfMask chromOut simple
chr13 40652977 A C 999 11 11 11 11 11 11 11 11 45 0 0 24 38 0 0 26 34 0 0 39 25 0 0 31 25 0 0 18 27 0 0 22 38 0 0 37 36 0 0 20 26 @
chr13 41320633 A G 999 11 11 11 11 11 11 11 11 44 0 0 15 29 0 0 21 25 0 0 26 33 0 0 15 34 0 0 24 28 0 0 15 31 0 0 30 32 0 0 29 24 @
chr13 43667318 T C 999 11 11 11 11 11 11 11 11 37 0 0 27 18 0 0 26 16 0 0 25 25 0 0 13 24 0 0 20 19 0 0 24 13 0 0 15 22 0 0 25 18 @
chr13 44615226 C A 999 11 11 11 11 11 11 11 11 22 0 0 10 22 0 0 11 23 0 0 8 23 0 0 10 32 0 0 9 18 0 0 4 18 0 0 4 19 0 0 5 23 merge_repeat trfMask chromOut simple
chr13 44615314 T G 999 11 11 11 11 11 11 11 11 26 0 0 8 21 0 0 16 16 0 0 21 25 0 0 16 21 0 0 9 17 0 0 10 20 0 0 9 17 0 0 11 23 merge_repeat chromOut
chr13 44615321 A G 999 11 11 11 11 11 11 11 11 26 0 0 8 21 0 0 14 16 0 0 21 24 0 0 16 20 0 0 9 17 0 0 10 19 0 0 9 17 0 0 11 22 merge_repeat chromOut
chr13 45395035 A T 999 11 11 11 11 11 11 11 11 29 0 0 22 15 0 0 33 21 0 0 26 15 0 0 29 24 0 0 23 30 0 0 25 22 0 0 20 24 0 0 17 12 @
chr13 45395043 A G 999 11 11 11 11 11 11 11 11 28 0 0 21 16 0 0 33 19 0 0 28 17 0 0 32 25 0 0 24 31 0 0 27 22 0 0 21 25 0 0 17 11 @
chr13 46486085 T G 999 11 11 11 11 11 11 11 11 28 0 0 10 20 0 0 20 22 0 0 15 26 0 0 30 22 0 0 24 21 0 0 18 29 0 0 8 20 0 0 15 30 merge_repeat chromOut
chr13 46983506 T C 999 11 11 11 11 11 11 11 11 21 0 0 16 16 0 0 21 12 0 0 9 12 0 0 13 12 0 0 19 14 0 0 18 14 0 0 8 20 0 0 19 9 merge_repeat trfMask chromOut simple
chr13 46983507 A T 999 11 11 11 11 11 11 11 11 21 0 0 15 15 0 0 21 12 0 0 9 12 0 0 13 12 0 0 19 13 0 0 18 13 0 0 8 19 0 0 19 9 merge_repeat trfMask chromOut simple
chr13 46983516 A T 999 11 11 11 11 11 11 11 11 27 1 0 16 17 0 0 23 16 0 0 8 19 0 0 12 20 0 0 22 23 0 0 18 27 0 0 8 20 0 0 20 12 merge_repeat trfMask chromOut simple
chr13 46994762 C A 999 11 11 11 11 11 11 11 11 23 0 0 5 19 0 0 7 21 0 0 9 25 0 0 11 38 0 0 7 28 0 0 8 21 1 0 6 26 0 0 11 12 @
chr13 47030978 A G 999 11 11 11 11 11 11 11 11 33 0 0 26 25 0 0 25 21 0 0 31 25 0 0 20 34 0 0 23 35 0 0 22 27 0 0 27 13 0 0 18 15 @
chr13 47405773 A G 999 11 11 11 11 11 11 11 11 53 0 0 29 24 0 0 41 26 0 0 25 28 0 0 29 29 0 0 30 31 0 0 37 29 0 0 28 37 0 0 34 24 @
chr13 47765971 T C 999 11 11 11 11 11 11 11 11 46 0 0 26 30 0 0 30 33 0 0 35 35 0 0 44 42 0 0 51 34 0 0 27 19 0 0 32 39 0 0 30 29 @
chr13 48728214 G C 999 11 11 11 11 11 11 11 11 29 0 0 15 19 0 0 20 11 0 0 15 23 0 0 13 21 0 0 12 21 0 0 11 18 0 0 14 18 0 0 22 20 merge_repeat trfMask chromOut simple
chr13 48728236 G A 999 11 11 11 11 11 11 11 11 26 0 0 18 17 0 0 17 9 0 0 19 14 0 0 11 16 0 0 16 19 0 0 14 15 0 0 13 17 0 0 18 16 merge_repeat trfMask chromOut simple
chr13 48728376 G C 999 11 11 11 11 11 11 11 11 22 0 0 15 7 0 0 17 9 0 0 13 10 0 0 26 9 0 0 27 8 0 0 16 8 0 0 19 8 0 0 15 8 merge_repeat trfMask chromOut simple
chr13 48785519 C T 999 11 11 11 11 11 11 11 11 21 0 0 18 10 0 0 12 12 0 0 19 8 0 0 15 11 0 0 20 8 0 0 21 5 0 0 14 7 0 0 17 15 merge_repeat trfMask chromOut simple nested
chr13 49923137 C G 999 11 11 11 11 11 11 11 11 20 0 0 10 10 0 0 11 17 0 0 11 16 0 0 12 28 0 0 16 26 0 0 15 9 0 0 16 15 0 0 13 17 merge_repeat chromOut nested
chr13 49957938 A G 999 11 11 11 11 11 11 11 11 43 0 0 17 28 0 0 24 27 0 0 27 16 0 0 24 25 0 0 31 26 0 0 19 30 0 0 23 23 0 0 26 23 merge_repeat chromOut segmentDup
chr13 49988088 C A 999 11 11 11 11 11 11 11 11 28 0 0 15 19 0 0 13 15 0 0 18 17 0 0 24 9 0 0 23 15 0 0 13 17 0 0 21 9 0 0 21 12 @
chr13 50290175 T C 999 11 11 11 11 11 11 11 11 46 0 0 30 28 0 0 30 26 0 0 22 36 0 0 23 45 0 0 25 30 0 0 19 29 0 0 34 28 0 0 26 20 merge_repeat segmentDup
chr13 51373536 G A 999 11 11 11 11 11 11 11 11 42 0 0 23 19 0 0 33 15 0 0 31 19 0 0 34 28 0 0 40 16 0 0 34 11 0 0 24 19 0 0 33 12 @
chr13 51400875 G A 999 11 11 11 11 11 11 11 11 33 0 0 26 14 0 0 25 12 0 0 25 13 0 0 36 18 0 0 33 19 0 0 17 16 0 0 18 26 0 0 24 23 @
chr13 51400879 T C 999 11 11 11 11 11 11 11 11 33 0 0 27 14 0 0 24 11 0 0 25 13 0 0 36 20 0 0 33 17 0 0 19 14 0 0 18 25 0 0 26 20 @
chr13 52591961 G T 999 11 11 11 11 11 11 11 11 22 0 0 9 14 0 0 10 15 0 0 10 18 0 0 15 20 0 0 11 35 0 0 12 19 0 0 6 26 0 0 10 12 @
chr13 53117204 C T 999 11 11 11 11 11 11 11 11 42 0 0 21 21 0 0 39 21 0 0 26 23 0 0 32 29 0 0 29 30 0 0 39 30 0 0 30 20 0 0 34 23 @
chr13 53270184 T G 999 11 11 11 11 11 11 11 11 31 0 0 36 19 0 0 26 10 0 0 19 13 0 0 18 13 0 0 23 14 0 0 27 17 0 1 26 16 0 0 24 17 merge_repeat chromOut
chr13 54070261 A G 999 11 11 11 11 11 11 11 11 43 0 0 22 37 0 0 20 29 0 0 22 26 0 0 22 38 0 0 27 29 0 0 20 27 0 0 25 18 1 0 25 19 @
chr13 54070264 T G 999 11 11 11 11 11 11 11 11 43 0 0 21 36 0 0 20 29 0 0 22 25 0 0 22 38 0 0 27 30 0 0 20 27 0 0 25 18 0 0 25 18 @
chr13 54730843 T C 999 11 11 11 11 11 11 11 11 40 0 0 26 34 0 0 39 23 0 0 22 18 0 0 34 30 0 0 32 30 0 0 24 32 0 0 21 25 0 0 25 26 merge_repeat chromOut
chr13 54830724 G A 999 11 11 11 11 11 11 11 11 28 0 0 17 18 0 0 23 28 0 0 15 25 0 0 13 15 0 0 32 17 0 0 17 18 0 0 19 14 0 0 15 16 merge_repeat chromOut nested
chr13 54830777 T C 999 11 11 11 11 11 11 11 11 22 0 0 11 14 0 0 13 20 0 0 14 18 0 0 18 7 0 0 26 13 0 0 10 12 0 0 12 12 0 0 15 15 @
chr13 54830798 T C 999 11 11 11 11 11 11 11 11 22 0 0 15 12 0 0 11 18 0 0 15 15 0 0 24 8 0 0 27 11 0 0 14 12 0 0 11 11 0 0 20 14 @
chr13 54830828 C G 999 11 11 11 11 11 11 11 11 22 0 0 21 11 0 0 13 11 0 0 15 8 1 0 22 7 0 0 24 9 0 1 17 9 1 0 13 8 0 0 19 10 merge_repeat trfMask chromOut simple
chr13 54893207 G T 999 11 11 11 11 11 11 11 11 44 0 0 30 41 0 0 32 27 0 0 39 19 0 0 24 32 0 0 24 22 0 0 34 31 0 0 22 34 0 0 25 19 merge_repeat trfMask simple nested
chr13 57316434 C G 999 11 11 11 11 11 11 11 11 34 0 0 17 26 0 0 27 22 0 0 20 22 0 0 39 19 0 0 27 28 0 0 22 12 0 0 17 28 0 0 22 22 @
chr13 58416905 A G 999 11 11 11 11 11 11 11 11 44 0 0 31 34 0 0 37 25 0 0 30 24 0 0 41 26 0 0 29 26 0 0 27 17 0 0 27 27 0 0 25 20 merge_repeat chromOut nested
chr13 58889794 G A 999 11 11 11 11 11 11 11 11 57 0 0 38 35 0 0 31 37 0 0 30 40 0 0 28 36 0 0 27 40 0 0 29 28 0 0 31 41 0 0 31 30 merge_repeat chromOut nested
chr13 59113344 A T 999 11 11 11 11 11 11 11 11 40 0 0 20 30 0 0 19 21 0 0 20 27 0 0 20 22 0 0 37 28 0 0 29 13 0 0 23 21 0 0 21 19 @
chr13 59113389 G A 999 11 11 11 11 11 11 11 11 40 0 0 24 29 0 0 22 21 0 0 28 23 0 0 27 17 0 0 30 24 0 0 30 12 0 0 25 20 0 0 26 14 @
chr13 59249646 C A 999 11 11 11 11 11 11 11 11 42 0 0 28 14 0 1 29 14 0 0 32 17 0 0 36 16 1 1 26 24 1 1 27 16 1 2 25 18 0 0 29 19 merge_repeat trfMask chromOut simple nested
chr13 59404285 C T 999 11 11 11 11 11 11 11 11 29 0 0 19 11 0 0 19 10 0 0 20 12 0 0 17 18 0 0 22 16 0 0 20 11 0 0 17 14 0 0 19 12 merge_repeat chromOut nested
chr13 59404289 C T 999 11 11 11 11 11 11 11 11 29 0 0 19 11 0 0 19 10 0 0 20 13 0 0 17 18 0 0 22 16 0 0 20 12 0 0 17 14 0 0 19 12 merge_repeat chromOut nested
chr13 59404296 G A 999 11 11 11 11 11 11 11 11 34 0 0 21 13 0 0 24 10 0 0 21 13 0 1 19 17 0 0 25 19 0 0 25 15 0 0 21 14 0 0 22 12 merge_repeat chromOut nested
chr13 59404300 C T 999 11 11 11 11 11 11 11 11 34 0 0 21 14 0 0 24 10 0 0 21 13 0 0 19 18 0 0 25 19 0 0 27 15 0 0 21 14 0 0 23 11 merge_repeat chromOut nested
chr13 59477646 T C 999 11 11 11 11 11 11 11 11 46 0 0 26 24 0 0 21 25 0 0 30 21 0 0 24 31 0 0 26 36 0 0 29 27 0 0 30 29 0 0 24 22 @
chr13 60559015 G A 999 11 11 11 11 11 11 11 11 60 0 0 23 37 0 1 39 40 0 0 37 36 0 0 38 34 0 0 32 40 0 0 28 42 0 0 41 37 0 0 28 32 @
chr13 60663761 T A 999 11 11 11 11 11 11 11 11 26 0 0 11 15 0 1 17 20 0 0 18 11 0 0 11 17 0 0 17 20 0 0 16 11 0 1 17 22 0 0 20 12 merge_repeat simple
chr13 60970840 A T 999 11 11 11 11 11 11 11 11 41 0 0 26 23 0 0 20 34 0 0 29 24 0 0 23 22 0 0 26 26 0 0 18 23 0 0 30 33 0 0 24 21 merge_repeat chromOut
chr13 60970886 T G 999 11 11 11 11 11 11 11 11 32 0 0 25 23 0 0 25 30 0 0 28 22 0 0 24 17 0 0 19 24 0 0 13 19 0 0 19 24 0 0 17 19 merge_repeat chromOut
chr13 60970916 G C 999 11 11 11 11 11 11 11 11 31 0 0 21 23 0 0 26 31 0 0 29 20 0 0 24 14 0 0 18 24 0 0 14 17 0 0 20 27 0 0 16 16 merge_repeat chromOut
chr13 60970918 G A 999 11 11 11 11 11 11 11 11 31 1 0 20 23 0 0 26 31 0 0 29 19 0 0 24 14 0 0 18 24 0 0 14 17 0 0 20 27 1 0 15 15 merge_repeat chromOut
chr13 60971359 T C 999 11 11 11 11 11 11 11 11 34 0 0 29 21 0 0 15 22 0 0 21 24 0 0 30 24 0 0 32 23 0 0 15 19 0 0 22 25 0 0 22 28 merge_repeat chromOut
chr13 62071254 C G 999 11 11 11 11 11 11 11 11 47 0 0 41 34 0 0 30 48 0 0 36 25 0 0 23 24 0 0 43 30 0 0 35 36 0 0 26 41 0 0 38 32 merge_repeat chromOut nested segmentDup
chr13 62579453 T A 999 11 11 11 11 11 11 11 11 63 0 0 39 32 0 0 37 27 0 0 43 37 0 0 41 28 0 0 41 22 0 0 43 33 0 0 34 32 0 0 43 36 merge_repeat segmentDup
chr13 65972562 C T 999 11 11 11 11 11 11 11 11 23 0 0 13 10 0 0 25 2 0 0 20 12 0 0 26 14 0 0 21 17 0 0 22 15 0 0 20 15 0 0 21 8 merge_repeat chromOut simple segmentDup
chr13 66602371 C A 999 11 11 11 11 11 11 11 11 46 0 0 17 29 0 0 37 34 0 0 27 39 0 0 44 29 0 0 26 25 0 0 26 29 0 0 30 27 0 0 31 28 merge_repeat chromOut segmentDup
chr13 66671055 T A 453 11 11 11 11 11 11 11 11 21 0 0 4 27 0 0 1 26 0 0 7 20 0 1 7 26 0 0 6 15 0 0 2 24 0 0 5 18 0 1 6 29 merge_repeat chromOut simple segmentDup
chr13 66874762 C A 999 11 11 11 11 11 11 11 11 24 0 0 19 15 1 0 12 12 1 0 13 18 0 0 21 15 0 0 16 17 0 0 17 14 0 0 12 23 0 0 15 9 merge_repeat trfMask chromOut simple
chr13 66874772 C A 999 11 11 11 11 11 11 11 11 25 0 0 21 14 0 0 13 12 1 0 10 21 0 0 18 15 0 0 16 18 0 0 16 16 0 0 12 22 0 0 16 9 merge_repeat trfMask chromOut simple
chr13 67288706 A G 999 11 11 11 11 11 11 11 11 59 0 0 36 36 0 0 27 35 0 0 28 40 0 0 32 30 0 0 36 23 0 0 33 27 0 0 29 31 0 0 37 39 merge_repeat chromOut nested
chr13 67352355 T C 999 11 11 11 11 11 11 11 11 54 0 0 38 31 0 0 45 49 0 0 39 30 0 0 31 27 0 0 28 38 0 0 28 26 0 0 31 38 0 0 31 40 merge_repeat chromOut nested
chr13 69404836 T C 999 11 11 11 11 11 11 11 11 54 0 0 26 28 0 0 39 32 0 0 31 35 0 0 35 38 0 0 25 34 0 0 33 28 0 0 37 23 0 0 28 30 merge_repeat chromOut
chr13 69441736 A C 999 11 11 11 11 11 11 11 11 50 0 0 28 43 0 0 28 40 0 0 29 31 0 0 30 42 0 0 32 37 0 0 23 27 0 0 32 41 0 0 24 30 @
chr13 70093953 A T 999 11 11 11 11 11 11 11 11 21 1 0 11 15 0 0 12 13 0 0 8 14 0 0 11 13 0 0 15 28 0 0 15 13 0 0 9 16 0 0 6 15 @
chr13 70093964 C G 999 11 11 11 11 11 11 11 11 26 0 0 17 17 0 0 13 14 0 0 10 16 0 0 12 15 0 0 16 27 0 0 17 12 0 0 11 17 0 0 9 17 @
chr13 71720169 A G 999 11 11 11 11 11 11 11 11 60 0 0 39 27 0 0 44 31 0 0 62 36 0 0 20 40 0 0 41 32 0 0 28 39 0 0 29 37 0 0 30 36 merge_repeat chromOut
chr13 74093729 T G 999 11 11 11 11 11 11 11 11 32 0 0 5 27 0 0 8 29 0 0 10 38 0 0 14 36 0 0 16 34 0 0 9 35 0 0 11 44 0 0 5 43 merge_repeat chromOut nested
chr13 76719728 C T 621 11 11 11 11 11 11 11 11 29 0 0 18 16 0 0 14 17 0 0 17 18 0 0 15 17 0 0 13 16 0 0 16 14 0 0 28 18 0 0 17 24 merge_repeat chromOut
chr13 77429321 C T 999 11 11 11 11 11 11 11 11 32 0 0 17 34 0 0 17 27 0 0 14 30 0 0 19 29 0 0 19 20 0 0 13 19 0 0 21 23 0 0 13 33 merge_repeat chromOut nested
chr13 77643877 G A 999 11 11 11 11 11 11 11 11 38 0 1 27 19 0 0 24 27 0 0 24 29 0 0 25 19 0 0 25 13 0 0 23 30 0 0 24 18 0 0 20 25 merge_repeat chromOut nested
chr13 80970893 T C 999 11 11 11 11 11 11 11 11 32 0 0 23 30 0 0 27 27 0 0 13 19 0 0 28 18 0 0 27 28 0 0 19 21 0 0 18 20 0 0 26 20 merge_repeat chromOut
chr13 81182333 G A 999 11 11 11 11 11 11 11 11 48 0 0 22 32 0 0 27 23 0 0 24 30 0 0 29 32 0 0 19 31 0 0 34 29 0 0 26 22 0 0 24 24 @
chr13 81473650 T A 999 11 11 11 11 11 11 11 11 20 0 0 4 24 0 0 5 24 0 0 3 25 0 0 3 29 0 0 6 15 0 0 3 21 0 0 3 22 0 0 6 14 merge_repeat simple
chr13 83102962 T G 999 11 11 11 11 11 11 11 11 50 0 0 36 20 0 0 36 30 0 0 33 37 0 0 43 28 0 0 29 38 0 0 25 25 0 0 27 35 0 0 36 23 @
chr13 83379076 C A 999 11 11 11 11 11 11 11 11 20 0 0 18 15 0 0 19 9 0 0 11 9 0 0 18 12 0 0 13 11 0 0 12 12 0 0 22 14 0 0 19 3 merge_repeat trfMask chromOut simple
chr13 85549193 G C 999 11 11 11 11 11 11 11 11 49 0 0 26 28 0 0 36 40 0 0 27 38 0 0 30 39 0 0 16 39 0 0 35 33 0 0 23 26 0 0 20 36 merge_repeat chromOut nested
chr13 86176766 C A 999 11 11 11 11 11 11 11 11 24 0 0 12 14 0 0 10 25 0 0 12 20 0 0 8 24 0 0 11 26 0 0 12 24 0 0 7 17 0 0 9 20 @
chr13 86513166 T C 999 11 11 11 11 11 11 11 11 46 0 0 23 23 0 0 29 21 0 0 32 29 0 0 24 24 0 0 29 22 0 0 24 27 0 0 40 29 0 0 29 27 merge_repeat chromOut
chr13 90575815 T G 999 11 11 11 11 11 11 11 11 50 0 0 34 43 0 0 23 39 0 0 32 29 0 0 48 39 0 0 34 30 0 0 24 26 0 0 35 31 0 0 33 27 @
chr13 91176567 T C 999 11 11 11 11 11 11 11 11 46 0 0 30 44 0 0 19 30 0 0 20 26 0 0 28 42 0 0 39 29 0 0 21 29 0 0 27 35 0 0 19 35 merge_repeat nested
chr13 91177224 A G 999 11 11 11 11 11 11 11 11 44 0 0 30 26 0 0 31 34 0 0 36 26 0 0 30 35 0 0 29 27 0 0 33 23 0 0 25 28 0 0 21 23 @
chr13 91358269 A T 999 11 11 11 11 11 11 11 11 21 0 0 6 15 0 0 7 18 0 0 11 17 0 0 18 20 0 0 10 21 0 0 12 18 0 0 13 14 0 0 8 17 merge_repeat trfMask chromOut simple
chr13 91358423 C A 999 11 11 11 11 11 11 11 11 28 0 0 11 27 0 0 7 34 0 0 11 29 0 0 9 33 0 0 19 30 0 0 11 28 0 0 11 24 0 0 8 20 @
chr13 91995859 A T 999 11 11 11 11 11 11 11 11 36 0 0 16 32 0 0 11 25 0 0 22 39 0 0 23 42 0 0 30 41 0 0 25 28 0 0 21 36 0 0 24 20 @
chr13 93191709 T C 999 11 11 11 11 11 11 11 11 46 0 0 23 23 0 0 27 31 0 0 23 35 0 0 28 40 0 0 25 33 0 0 23 36 0 0 19 31 0 0 23 34 @
chr13 93612815 A C 999 11 11 11 11 11 11 11 11 49 0 0 23 26 0 0 30 25 0 0 29 31 0 0 24 38 0 0 26 33 0 0 26 25 0 0 24 35 0 0 22 28 @
chr13 93616691 T C 999 11 11 11 11 11 11 11 11 29 0 0 17 18 0 0 20 19 0 0 22 15 0 0 18 15 0 0 20 20 0 0 11 18 0 0 22 20 0 0 23 13 @
chr13 93842278 G T 999 11 11 11 11 11 11 11 11 20 0 0 13 7 0 0 11 10 0 0 14 13 0 0 16 17 0 0 21 12 0 0 16 14 0 0 14 11 0 0 10 17 merge_repeat trfMask chromOut simple nested
chr13 93842285 G T 999 11 11 11 11 11 11 11 11 24 0 0 14 11 0 0 11 13 0 0 16 16 0 0 16 19 0 0 22 16 0 0 16 15 0 0 15 13 0 0 9 17 merge_repeat trfMask chromOut simple nested
chr13 93842297 G T 999 11 11 11 11 11 11 11 11 28 0 0 11 17 0 0 17 15 0 0 11 18 0 0 18 21 0 0 20 19 0 0 19 18 0 0 23 17 0 0 15 23 merge_repeat trfMask chromOut simple nested
chr13 93842311 A T 999 11 11 11 11 11 11 11 11 33 0 0 13 23 0 0 23 19 0 0 10 23 0 0 18 23 0 0 23 23 0 0 25 16 0 0 25 24 0 0 17 27 merge_repeat trfMask simple nested
chr13 93918354 T C 999 11 11 11 11 11 11 11 11 54 0 0 33 26 0 0 25 33 0 0 26 28 0 0 41 47 0 0 32 33 0 0 29 27 0 0 26 28 0 0 28 33 @
chr13 95076607 A G 999 11 11 11 11 11 11 11 11 41 0 0 33 29 0 0 16 25 0 0 20 34 0 0 31 34 0 0 33 35 0 0 29 36 0 0 24 31 0 0 17 35 @
chr13 95133961 C T 999 11 11 11 11 11 11 11 11 48 0 0 49 32 0 0 26 26 0 0 39 30 0 0 30 32 0 0 33 32 0 0 22 26 0 0 34 36 0 0 33 22 @
chr13 99250080 T G 999 11 11 11 11 11 11 11 11 56 0 0 32 33 0 0 35 39 0 0 24 32 0 0 23 33 0 0 38 34 0 0 30 36 0 0 29 29 0 0 23 37 merge_repeat simple
chr13 105378915 G A 999 11 11 11 11 11 11 11 11 48 0 0 28 25 0 1 37 19 0 0 28 33 0 0 29 28 1 0 20 33 0 0 26 22 0 0 22 31 0 0 24 29 merge_repeat chromOut nested
chr13 105707756 A G 999 11 11 11 11 11 11 11 11 42 0 0 23 27 0 0 26 34 0 0 23 26 0 0 23 23 0 0 23 26 0 0 19 23 0 0 31 23 0 0 23 20 @
chr13 107071069 C G 999 11 11 11 11 11 11 11 11 32 0 0 13 19 0 0 17 19 0 0 18 21 0 0 26 25 0 0 16 20 0 0 22 20 0 0 15 18 0 0 17 26 merge_repeat chromOut nested
chr13 107662170 A T 999 11 11 11 11 11 11 11 11 21 0 0 11 10 0 0 14 17 0 0 21 25 0 0 13 17 0 0 11 27 0 0 14 23 0 0 12 31 0 0 15 20 merge_repeat trfMask chromOut simple nested
chr13 107782219 T G 999 11 11 11 11 11 11 11 11 33 0 0 27 28 0 0 24 23 0 0 22 25 0 0 25 27 0 0 15 34 0 0 25 19 0 0 12 21 0 0 26 25 merge_repeat trfMask chromOut simple
chr13 107892491 A G 999 11 11 11 11 11 11 11 11 45 0 0 19 26 0 1 14 35 0 0 21 25 0 0 19 30 0 0 31 27 0 0 23 27 0 0 26 32 0 0 25 25 @
chr13 109553776 C T 999 11 11 11 11 11 11 11 11 23 0 1 18 10 0 0 17 17 0 0 11 12 0 0 15 9 0 0 19 21 0 0 18 14 1 0 13 17 0 0 18 12 merge_repeat trfMask chromOut simple
chr13 111055255 G C 999 11 11 11 11 11 11 11 11 44 0 0 27 39 0 0 28 26 0 0 15 32 0 0 20 24 0 0 20 27 0 0 26 33 0 0 26 29 0 0 30 23 merge_repeat chromOut
chr13 111713407 G A 999 11 11 11 11 11 11 11 11 59 0 0 48 29 0 0 37 39 0 0 27 32 0 0 38 26 0 0 36 34 0 0 40 32 0 0 49 29 0 0 36 24 @
chr13 112000615 A G 999 11 11 11 11 11 11 11 11 40 0 0 19 21 0 0 21 28 0 0 19 29 0 0 25 30 0 0 21 41 0 0 19 38 0 0 19 33 0 0 19 23 merge_repeat chromOut
chr13 112500925 C T 999 11 11 11 11 11 11 11 11 49 0 0 17 32 0 0 28 27 0 0 23 33 0 0 31 26 0 0 33 32 0 0 21 33 0 0 22 33 0 0 27 30 @
chr13 112513187 G A 999 11 11 11 11 11 11 11 11 52 0 0 25 29 0 0 23 36 0 0 29 35 0 0 24 28 0 0 28 38 0 0 29 26 0 0 39 28 0 0 16 37 @
chr13 112513626 A G 999 11 11 11 11 11 11 11 11 41 0 0 13 32 0 0 21 36 0 0 25 17 0 0 26 35 0 0 42 22 0 0 20 21 0 0 15 29 0 0 22 41 @
chr13 112539526 A T 999 11 11 11 11 11 11 11 11 51 0 0 25 26 0 0 30 25 0 0 38 23 0 1 32 29 0 0 35 32 0 0 31 30 0 0 37 23 0 0 32 24 merge_repeat chromOut nested
chr13 113340574 A G 999 11 11 11 11 11 11 11 11 20 0 0 18 20 0 0 22 24 0 0 16 18 0 0 8 31 0 0 22 28 0 0 11 24 0 0 18 25 0 0 13 7 @
chr13 113982475 T C 999 11 11 11 11 11 11 11 11 45 0 0 30 21 0 0 34 31 0 0 32 31 0 0 32 24 0 0 38 32 0 0 32 23 0 0 15 30 0 0 31 29 @
chr13 119457151 G T 999 11 11 11 11 11 11 11 11 21 0 0 5 29 0 0 13 19 0 0 14 18 0 0 13 25 0 0 12 19 0 0 8 13 0 0 17 25 0 0 17 14 @
chr13 120037574 C G 999 11 11 11 11 11 11 11 11 22 0 0 18 13 0 0 14 11 0 0 18 16 0 0 26 16 0 0 19 14 0 0 12 10 0 0 16 12 0 0 21 16 merge_repeat segmentDup