chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr12	4056548	C	A	999	11 11 11 11 11 11 11 11	25	0	0	18	15	0	0	14	18	0	0	21	22	0	0	15	33	0	0	13	20	0	0	15	16	0	0	12	13	0	0	16	11
chr12	5961128	A	G	999	11 11 11 11 11 11 11 11	68	0	0	31	39	0	0	38	41	0	0	36	39	0	0	31	57	0	0	30	41	0	0	36	32	0	0	32	48	0	0	35	52	merge_repeat		chromOut
chr12	6289113	A	G	999	11 11 11 11 11 11 11 11	36	0	0	20	21	0	0	17	28	0	0	25	18	0	0	23	25	0	0	34	21	0	0	28	18	0	0	9	30	0	0	19	17	merge_repeat		chromOut
chr12	7749531	A	C	999	11 11 11 11 11 11 11 11	36	0	0	16	20	0	0	21	28	0	0	18	32	0	0	30	36	0	0	23	28	0	0	15	24	0	0	27	20	0	0	14	31	merge_repeat		chromOut	simple
chr12	7749533	A	C	999	11 11 11 11 11 11 11 11	36	0	0	16	20	0	0	21	28	1	0	17	32	0	0	30	37	0	0	23	28	0	0	15	26	0	0	27	20	0	0	14	31	merge_repeat		chromOut	simple
chr12	11056713	T	C	999	11 11 11 11 11 11 11 11	36	0	0	20	32	0	0	15	36	0	0	10	26	0	0	23	31	0	0	20	29	0	0	12	32	0	0	19	29	1	0	14	33
chr12	11213662	A	G	999	11 11 11 11 11 11 11 11	22	0	0	17	10	0	0	18	12	0	0	14	13	0	0	18	12	0	0	16	6	0	0	22	7	0	0	16	9	0	0	20	6	merge_repeat		chromOut
chr12	12543508	T	C	999	11 11 11 11 11 11 11 11	54	0	0	41	26	0	0	34	41	0	0	34	26	0	0	34	20	0	0	28	34	0	0	28	37	0	0	35	29	0	0	29	28	merge_repeat		chromOut
chr12	13079386	G	T	999	11 11 11 11 11 11 11 11	46	0	0	24	23	0	0	30	30	0	0	17	30	0	0	21	25	0	0	19	30	0	0	25	46	0	0	20	30	0	0	18	36	merge_repeat	trfMask	chromOut	simple	nested
chr12	13079408	G	A	999	11 11 11 11 11 11 11 11	60	0	0	32	34	0	0	41	40	0	0	26	36	0	0	28	35	0	0	28	32	0	0	22	54	0	0	28	34	0	0	24	50	merge_repeat		chromOut	simple	nested
chr12	13691635	T	G	999	11 11 11 11 11 11 11 11	21	0	0	19	14	0	0	13	9	0	0	13	18	0	0	20	14	0	0	19	21	0	0	18	21	0	0	17	26	0	0	12	9	merge_repeat		chromOut
chr12	14693168	G	A	999	11 11 11 11 11 11 11 11	59	0	0	39	22	0	0	39	20	0	0	31	28	0	0	39	24	0	0	45	25	0	0	43	28	0	0	40	34	0	0	43	40	merge_repeat		chromOut
chr12	21091578	A	G	999	11 11 11 11 11 11 11 11	44	0	0	37	31	0	0	22	22	0	0	25	32	0	0	36	34	0	0	23	29	0	0	28	19	0	0	26	20	0	0	34	35	merge_repeat					segmentDup
chr12	21570917	C	G	999	11 11 11 11 11 11 11 11	52	0	0	41	38	0	0	30	28	0	0	36	35	0	0	35	23	0	0	26	29	0	0	30	26	0	0	26	26	0	0	38	39	merge_repeat		chromOut
chr12	22286112	A	G	999	11 11 11 11 11 11 11 11	23	0	0	20	3	0	0	13	11	0	0	12	11	0	0	15	17	0	0	18	19	0	0	16	8	0	0	15	8	0	0	13	10	merge_repeat					segmentDup
chr12	26161896	T	G	999	11 11 11 11 11 11 11 11	31	0	0	27	14	0	0	30	24	0	0	28	25	0	0	27	26	0	0	18	35	0	0	22	22	0	0	27	28	0	0	13	18
chr12	26161911	A	G	999	11 11 11 11 11 11 11 11	31	0	0	30	18	0	0	33	22	0	0	25	24	0	0	32	28	0	0	19	39	0	0	22	21	0	0	28	30	0	0	15	16
chr12	26194215	A	T	999	11 11 11 11 11 11 11 11	37	0	0	32	7	0	0	32	12	0	0	24	13	0	0	32	8	0	0	31	13	0	0	29	23	0	0	26	11	0	0	26	12
chr12	26194315	A	G	999	11 11 11 11 11 11 11 11	25	0	0	29	4	0	0	36	7	0	0	29	6	0	0	36	5	0	0	43	5	0	0	29	16	0	0	23	8	0	0	15	10
chr12	28311242	A	G	999	11 11 11 11 11 11 11 11	22	0	0	9	20	0	0	9	13	0	0	10	18	0	0	14	18	0	0	19	7	0	0	12	11	0	0	15	8	0	0	9	13	merge_repeat		chromOut		nested
chr12	28579193	A	G	999	11 11 11 11 11 11 11 11	49	0	0	29	26	0	0	31	27	0	0	28	22	0	0	33	31	0	0	36	30	0	0	20	29	0	0	28	27	0	0	28	30
chr12	28611689	A	T	999	11 11 11 11 11 11 11 11	49	0	0	28	22	0	0	27	28	0	0	34	34	0	0	33	27	0	0	41	38	0	0	25	24	0	0	26	31	0	0	43	24	merge_repeat	trfMask	chromOut	simple
chr12	28640853	G	T	999	11 11 11 11 11 11 11 11	50	0	0	26	35	0	0	25	29	0	0	23	27	0	0	27	38	0	0	26	32	0	0	22	36	0	0	20	33	0	0	30	27	merge_repeat		chromOut		nested
chr12	29327037	A	G	999	11 11 11 11 11 11 11 11	38	0	0	19	29	0	0	19	35	0	0	29	35	0	0	34	30	0	0	22	29	0	0	20	31	0	0	13	25	0	0	32	33
chr12	29449615	G	T	999	11 11 11 11 11 11 11 11	50	0	0	30	36	0	0	27	28	0	0	40	41	0	0	30	41	0	0	27	34	0	0	31	28	0	0	29	21	0	0	39	21	merge_repeat		chromOut		nested
chr12	30066556	T	G	999	11 11 11 11 11 11 11 11	41	0	0	13	33	0	0	28	19	0	0	18	30	0	0	19	22	0	0	28	23	0	0	26	21	0	0	20	29	0	0	26	20	merge_repeat		chromOut		nested
chr12	30606840	G	C	999	11 11 11 11 11 11 11 11	42	0	0	34	39	0	0	27	42	0	0	25	37	0	0	24	26	0	0	40	40	0	0	24	18	0	0	31	37	0	0	28	41
chr12	30737288	C	G	999	11 11 11 11 11 11 11 11	24	0	0	16	42	0	0	21	36	0	0	15	23	0	0	20	35	0	0	24	34	0	0	12	12	0	0	21	23	0	0	15	20
chr12	31530942	A	G	999	11 11 11 11 11 11 11 11	30	0	0	21	35	0	0	10	20	0	0	26	28	0	0	17	32	0	0	22	30	0	0	18	25	0	0	12	40	0	0	17	25	merge_repeat		chromOut
chr12	31669476	G	T	999	11 11 11 11 11 11 11 11	44	0	0	34	26	0	0	34	23	0	0	34	42	0	0	42	31	0	0	42	32	0	0	24	20	0	0	34	23	0	0	34	26
chr12	31669482	A	G	999	11 11 11 11 11 11 11 11	45	0	0	32	25	0	1	34	22	0	0	33	41	0	0	41	30	0	0	40	32	0	0	24	21	0	0	34	23	0	0	33	26
chr12	32073537	C	A	999	11 11 11 11 11 11 11 11	27	0	0	13	14	0	0	20	13	0	0	21	19	0	0	13	14	0	0	24	17	0	0	20	17	0	0	26	15	0	0	16	16
chr12	32694511	G	T	999	11 11 11 11 11 11 11 11	32	0	0	18	18	1	0	17	17	0	0	27	15	1	0	18	19	0	1	25	14	0	0	23	9	0	0	33	15	0	0	23	16	merge_repeat	trfMask	chromOut	simple	nested
chr12	38954727	C	A	999	11 11 11 11 11 11 11 11	50	0	0	33	28	0	0	27	35	0	0	18	39	0	0	30	33	0	0	26	30	0	0	28	33	0	0	24	31	0	1	23	26	merge_repeat		chromOut	simple	nested
chr12	39488993	G	A	999	11 11 11 11 11 11 11 11	47	0	0	25	26	0	0	26	27	0	0	24	27	0	0	26	37	0	0	35	26	0	0	24	38	0	0	28	34	0	0	29	18
chr12	41863291	T	C	999	11 11 11 11 11 11 11 11	34	0	0	13	21	0	0	30	25	0	0	37	20	0	0	26	34	0	0	32	33	0	0	21	25	0	0	25	28	0	0	25	28
chr12	42636056	T	C	999	11 11 11 11 11 11 11 11	45	0	0	28	20	0	0	40	21	0	0	25	24	0	0	36	16	0	0	38	19	0	0	28	24	0	0	24	21	0	0	25	26	merge_repeat		chromOut
chr12	44722206	T	G	999	11 11 11 11 11 11 11 11	46	0	0	33	26	0	0	21	25	0	0	34	26	0	0	23	28	0	0	33	27	0	0	34	24	0	0	29	27	1	0	23	29	merge_repeat		chromOut		nested
chr12	44748043	C	T	999	11 11 11 11 11 11 11 11	36	0	0	24	18	0	1	26	21	0	0	29	18	0	0	20	29	0	0	32	19	0	0	22	16	0	0	30	20	0	0	17	19	merge_repeat		chromOut
chr12	45339780	A	G	999	11 11 11 11 11 11 11 11	20	0	0	10	10	0	0	10	18	0	0	13	8	0	0	21	15	0	0	17	14	0	0	13	11	0	0	8	13	0	0	16	5	merge_repeat		chromOut
chr12	46827623	G	T	999	11 11 11 11 11 11 11 11	27	0	0	17	10	0	0	18	13	0	0	17	17	0	0	15	14	0	0	27	19	0	0	24	15	0	0	22	12	0	0	19	15	merge_repeat		chromOut
chr12	47726859	G	A	999	11 11 11 11 11 11 11 11	58	0	0	43	26	0	0	62	32	0	0	32	34	0	0	43	38	0	0	40	27	0	0	33	25	0	0	38	31	0	0	38	34
chr12	47923175	T	C	999	11 11 11 11 11 11 11 11	50	0	0	24	26	0	0	35	26	0	0	29	32	0	0	30	34	0	0	34	29	0	0	25	29	0	0	30	28	0	0	29	28	merge_repeat		chromOut		nested
chr12	48481023	A	G	999	11 11 11 11 11 11 11 11	42	0	0	22	22	0	0	23	32	0	0	21	39	0	0	26	26	0	0	27	28	0	0	24	18	0	0	20	28	0	0	28	20	merge_repeat		chromOut		nested
chr12	51636727	G	A	999	11 11 11 11 11 11 11 11	24	0	0	12	18	0	0	14	29	0	0	12	12	0	0	22	20	0	0	12	15	0	0	16	17	0	0	10	18	0	0	10	18
chr12	51840114	G	T	999	11 11 11 11 11 11 11 11	28	0	0	5	23	0	0	6	34	0	0	5	27	0	0	7	28	0	0	7	26	0	0	4	25	0	0	2	26	0	0	5	28
chr12	51902783	C	A	999	11 11 11 11 11 11 11 11	24	0	0	8	16	0	0	14	11	0	0	17	14	0	0	11	18	0	0	13	13	0	0	24	14	0	0	15	16	0	0	18	18
chr12	53063224	C	T	999	11 11 11 11 11 11 11 11	47	0	0	38	34	0	0	23	34	0	0	22	25	0	0	36	35	0	0	28	36	0	0	30	35	0	0	33	25	0	0	39	27
chr12	53253555	T	G	999	11 11 11 11 11 11 11 11	26	0	0	27	3	0	0	30	3	0	0	25	1	0	0	24	5	0	0	26	4	0	0	38	2	0	0	29	2	0	0	27	6
chr12	53542793	T	G	999	11 11 11 11 11 11 11 11	32	0	0	20	19	0	0	20	25	0	0	28	15	0	0	29	19	0	0	14	27	0	0	30	27	0	0	34	21	0	0	17	15	merge_repeat	trfMask	chromOut	simple
chr12	54213345	G	A	999	11 11 11 11 11 11 11 11	43	0	0	27	23	0	0	37	30	0	0	41	17	0	0	48	33	0	0	40	40	0	0	32	21	0	0	36	22	0	0	18	25
chr12	54703052	A	G	999	11 11 11 11 11 11 11 11	27	0	0	7	23	0	0	14	24	0	0	12	22	0	0	18	24	0	0	20	17	0	0	12	24	0	0	11	16	0	0	8	23	merge_repeat					segmentDup
chr12	54748472	T	C	999	11 11 11 11 11 11 11 11	34	0	0	25	22	0	0	26	19	0	0	30	30	0	0	18	20	0	0	22	17	0	0	23	11	0	0	22	12	0	0	35	11	merge_repeat		chromOut		nested
chr12	55758373	G	T	999	11 11 11 11 11 11 11 11	60	0	0	33	48	0	0	39	43	0	0	33	39	0	0	32	28	0	0	39	44	0	0	42	27	0	0	31	33	0	0	31	35
chr12	56762401	G	T	999	11 11 11 11 11 11 11 11	55	0	0	34	33	0	0	31	32	0	0	24	41	0	0	36	40	0	0	26	31	0	0	26	29	0	0	30	28	0	0	26	34	merge_repeat		chromOut
chr12	56780269	C	A	999	11 11 11 11 11 11 11 11	50	0	0	25	29	0	0	27	23	0	0	26	31	0	0	30	28	0	0	38	34	0	0	30	29	0	0	39	34	0	0	25	29	merge_repeat		chromOut
chr12	56786003	C	A	999	11 11 11 11 11 11 11 11	57	0	0	30	27	0	0	35	30	0	0	44	28	0	0	25	36	0	0	32	31	0	0	40	38	0	0	30	29	0	0	30	30	merge_repeat				nested
chr12	56786111	C	A	999	11 11 11 11 11 11 11 11	38	0	0	31	11	0	0	25	13	0	0	30	9	0	0	32	19	0	0	25	15	0	0	34	12	0	0	38	9	0	0	30	8	merge_repeat				nested
chr12	56788524	G	T	999	11 11 11 11 11 11 11 11	38	0	0	16	36	0	0	19	34	0	0	22	28	0	0	30	38	0	0	23	34	0	0	24	36	0	0	22	25	0	0	15	23
chr12	56788570	G	T	999	11 11 11 11 11 11 11 11	35	0	0	17	30	0	0	16	24	0	0	25	31	0	0	26	36	0	0	22	28	0	0	24	29	0	0	13	29	0	0	15	20
chr12	56788634	G	T	999	11 11 11 11 11 11 11 11	31	0	0	24	23	0	0	15	25	0	0	15	22	0	0	15	30	0	0	17	24	0	0	15	24	0	0	18	33	0	0	11	20	merge_repeat		chromOut	simple
chr12	56790700	G	T	999	11 11 11 11 11 11 11 11	58	0	0	28	40	0	0	22	37	0	0	27	47	0	0	31	42	0	0	27	41	0	0	29	29	0	0	30	40	0	0	24	39
chr12	56800791	C	A	999	11 11 11 11 11 11 11 11	63	0	0	45	46	0	0	38	33	0	0	35	41	0	0	34	38	0	0	35	28	0	0	28	47	0	0	40	44	0	0	39	36
chr12	56805062	G	T	999	11 11 11 11 11 11 11 11	24	0	0	20	4	0	0	31	14	0	0	27	11	0	0	25	13	0	0	28	11	0	0	27	14	0	0	20	11	1	0	22	11
chr12	56805065	G	T	999	11 11 11 11 11 11 11 11	26	0	0	21	5	0	0	32	14	0	0	28	11	0	0	27	12	0	0	29	10	0	0	28	14	0	0	24	11	0	0	27	12
chr12	56825798	G	T	999	11 11 11 11 11 11 11 11	46	0	0	21	25	0	0	30	34	0	0	28	46	0	0	27	37	0	0	39	45	0	0	28	31	0	0	28	37	0	0	26	40
chr12	57218478	A	G	999	11 11 11 11 11 11 11 11	49	0	0	36	23	0	0	48	24	0	0	37	18	0	0	38	39	0	0	35	24	0	0	45	22	0	0	38	13	0	0	32	17	merge_repeat		chromOut		nested
chr12	59093574	C	A	999	11 11 11 11 11 11 11 11	23	0	0	15	8	0	0	20	9	0	0	12	22	0	0	15	19	0	0	13	25	0	0	19	16	0	0	18	18	0	0	20	20
chr12	59241074	T	A	999	11 11 11 11 11 11 11 11	43	0	0	18	26	0	0	28	32	0	0	16	37	0	0	31	31	0	0	30	28	0	0	19	29	0	0	16	44	0	0	23	20	merge_repeat		chromOut		nested
chr12	60712654	C	T	999	11 11 11 11 11 11 11 11	32	0	0	13	26	0	0	12	28	0	0	16	25	0	0	13	19	0	0	18	27	0	0	7	28	0	0	18	25	0	0	14	24	merge_repeat		chromOut		nested
chr12	61128289	T	G	999	11 11 11 11 11 11 11 11	40	0	0	20	24	0	0	17	24	0	0	12	31	0	0	16	38	0	0	16	35	0	0	10	30	0	0	18	29	0	0	23	28	merge_repeat		chromOut
chr12	61193818	T	G	999	11 11 11 11 11 11 11 11	48	0	0	31	34	0	0	27	39	0	0	25	28	0	0	28	28	0	0	32	37	0	0	25	23	0	0	30	29	0	0	39	26	merge_repeat		chromOut
chr12	61899780	C	A	999	11 11 11 11 11 11 11 11	57	0	0	34	30	0	0	42	38	0	0	34	46	0	0	34	23	0	0	32	29	0	0	44	33	0	0	41	39	0	0	35	26
chr12	62305210	G	C	999	11 11 11 11 11 11 11 11	29	0	0	22	24	0	0	17	36	0	0	16	13	0	0	13	25	0	0	14	25	0	0	23	32	0	0	11	27	0	0	19	13	merge_repeat		chromOut		nested
chr12	63557459	T	A	999	11 11 11 11 11 11 11 11	36	0	0	21	37	0	0	38	27	0	0	27	31	0	0	40	46	0	0	20	16	0	0	21	22	0	0	28	24	0	0	32	30
chr12	65895684	T	C	999	11 11 11 11 11 11 11 11	54	0	0	32	32	0	0	35	37	0	0	44	24	0	0	30	28	0	0	37	39	0	0	28	34	0	0	22	32	0	0	46	34	merge_repeat				nested
chr12	67163209	G	T	999	11 11 11 11 11 11 11 11	24	0	0	19	11	1	0	14	10	0	1	19	9	0	0	13	12	0	0	29	20	0	0	13	15	1	0	22	7	0	0	16	8	merge_repeat	trfMask	chromOut	simple	nested
chr12	68976141	G	A	999	11 11 11 11 11 11 11 11	44	0	0	28	27	0	0	29	42	0	0	33	34	0	0	32	34	0	0	36	25	0	0	25	19	0	0	22	27	0	0	26	33
chr12	69255684	G	C	999	11 11 11 11 11 11 11 11	27	0	0	14	13	0	0	24	13	0	0	31	22	0	0	21	27	0	0	23	24	0	0	19	24	0	0	32	17	0	0	23	16	merge_repeat		chromOut
chr12	69611366	G	T	999	11 11 11 11 11 11 11 11	26	0	0	20	13	0	0	23	10	0	0	20	9	0	0	23	10	0	0	14	18	0	0	12	16	0	0	13	13	0	0	31	18	merge_repeat	trfMask	chromOut	simple
chr12	70645444	T	C	999	11 11 11 11 11 11 11 11	35	0	0	28	16	0	0	14	21	0	0	19	27	0	0	36	31	0	0	30	18	0	0	25	21	0	0	18	20	0	0	29	18	merge_repeat	trfMask	chromOut	simple	nested
chr12	70645456	A	C	999	11 11 11 11 11 11 11 11	36	0	0	23	15	0	0	16	20	0	0	19	22	1	0	40	26	0	0	28	16	0	0	22	17	0	0	22	19	0	0	25	14	merge_repeat	trfMask	chromOut	simple	nested
chr12	71797931	T	C	999	11 11 11 11 11 11 11 11	39	0	0	41	24	0	0	29	10	0	0	32	21	0	0	34	17	0	0	41	17	0	0	33	22	0	0	38	18	0	1	27	12	merge_repeat	trfMask	chromOut	simple	nested
chr12	71797970	T	C	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	19	5	0	0	19	12	0	0	17	8	0	0	22	8	0	0	21	11	0	0	24	10	0	0	18	9	merge_repeat		chromOut		nested
chr12	71797972	C	T	999	11 11 11 11 11 11 11 11	22	0	0	13	9	0	0	19	5	0	0	19	12	0	0	17	8	0	0	22	7	0	0	21	11	0	0	23	9	0	0	17	9	merge_repeat		chromOut		nested
chr12	71797973	T	A	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	19	5	0	0	19	12	0	0	17	8	0	0	22	8	0	0	21	11	0	0	24	8	0	0	18	9	merge_repeat		chromOut		nested
chr12	71797974	G	C	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	19	5	0	0	19	12	0	0	17	8	0	0	22	8	0	0	21	11	0	0	24	10	0	0	18	9	merge_repeat		chromOut	simple	nested
chr12	71797975	T	A	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	19	5	0	0	19	12	0	0	17	8	0	0	22	8	0	0	21	11	0	0	24	10	0	0	18	9	merge_repeat		chromOut	simple	nested
chr12	71797989	G	A	999	11 11 11 11 11 11 11 11	49	0	0	31	20	0	0	31	18	0	0	26	33	0	0	34	33	0	0	42	28	0	0	38	17	0	0	35	17	0	0	30	27	merge_repeat		chromOut	simple	nested
chr12	72587689	G	A	999	11 11 11 11 11 11 11 11	49	0	0	35	29	0	0	24	31	0	0	22	27	0	0	39	37	0	0	40	35	0	0	25	44	1	0	27	28	0	1	21	33	merge_repeat		chromOut
chr12	75874425	C	G	999	11 11 11 11 11 11 11 11	31	0	0	11	28	1	0	12	21	0	0	12	22	0	0	13	20	0	0	18	34	0	0	17	25	1	0	19	35	0	0	11	20
chr12	75874428	C	G	999	11 11 11 11 11 11 11 11	28	0	0	10	28	0	1	9	23	0	0	9	22	0	0	11	21	0	1	14	36	0	0	18	25	0	0	13	35	0	0	7	21
chr12	77662663	C	A	999	11 11 11 11 11 11 11 11	48	0	0	30	18	0	0	46	15	0	0	39	22	0	0	39	29	0	0	35	30	0	0	40	27	0	0	49	22	0	0	44	19	merge_repeat		chromOut	simple
chr12	77662727	T	C	999	11 11 11 11 11 11 11 11	42	0	0	30	16	0	0	33	13	0	0	31	22	0	0	39	27	0	0	33	28	0	0	36	24	0	0	24	18	0	0	31	22	merge_repeat			simple
chr12	78221292	T	C	999	11 11 11 11 11 11 11 11	31	1	0	28	31	0	0	15	16	1	0	21	27	0	0	29	25	0	0	17	18	0	0	14	19	0	0	17	23	0	0	21	25	merge_repeat		chromOut		nested
chr12	78488447	A	G	999	11 11 11 11 11 11 11 11	48	0	0	27	35	0	0	27	31	0	0	27	25	0	0	29	25	0	0	26	22	0	0	28	25	0	0	33	24	0	0	23	25	merge_repeat		chromOut
chr12	79430316	G	A	999	11 11 11 11 11 11 11 11	40	0	0	34	23	0	0	25	17	0	0	30	28	0	0	34	17	0	0	35	34	0	0	36	19	0	0	30	31	0	0	23	17
chr12	79540812	A	C	999	11 11 11 11 11 11 11 11	30	0	0	15	15	0	0	16	28	0	0	21	21	0	0	13	33	0	0	33	29	0	0	24	27	0	0	17	23	0	0	15	26	merge_repeat	trfMask	chromOut	simple
chr12	79540816	A	C	999	11 11 11 11 11 11 11 11	28	0	0	14	14	0	0	15	28	0	0	20	22	0	0	11	32	0	0	33	30	0	0	22	25	0	0	18	21	0	0	15	25	merge_repeat	trfMask	chromOut	simple
chr12	79633022	G	A	999	11 11 11 11 11 11 11 11	57	0	0	35	28	0	0	34	39	0	0	31	36	0	0	36	40	0	0	26	31	0	0	30	33	0	0	32	45	0	0	34	33
chr12	79633118	C	T	999	11 11 11 11 11 11 11 11	53	0	0	30	35	0	0	36	36	0	0	28	27	0	0	34	38	0	0	28	25	0	0	30	31	0	0	27	43	0	0	36	32
chr12	79911543	G	A	999	11 11 11 11 11 11 11 11	45	0	0	42	22	0	0	28	22	0	0	28	17	0	0	29	22	0	0	40	28	0	0	47	29	0	0	25	23	0	0	31	21
chr12	80105211	T	G	999	11 11 11 11 11 11 11 11	41	0	0	16	25	0	0	32	20	0	0	32	16	0	0	37	31	0	0	34	24	0	0	27	26	0	0	30	23	0	0	32	18	merge_repeat	trfMask	chromOut	simple
chr12	80105232	G	A	999	11 11 11 11 11 11 11 11	41	0	0	19	22	0	0	25	19	0	0	27	18	0	0	27	30	0	0	29	25	0	0	26	27	0	0	24	21	0	0	30	16	merge_repeat	trfMask	chromOut	simple
chr12	80553633	G	C	999	11 11 11 11 11 11 11 11	28	0	0	31	8	0	0	26	5	0	0	28	6	0	0	22	6	0	0	31	8	0	0	30	6	0	0	22	7	0	0	26	4	merge_repeat		chromOut
chr12	81119194	C	T	999	11 11 11 11 11 11 11 11	36	1	1	11	23	0	0	16	32	0	0	18	28	0	2	14	29	0	1	17	26	0	0	15	30	0	1	14	39	1	1	15	24	merge_repeat	trfMask	chromOut	simple	nested
chr12	83297165	T	C	999	11 11 11 11 11 11 11 11	37	0	0	30	17	0	0	25	21	0	0	33	19	0	0	27	31	0	0	19	24	0	0	24	19	0	0	21	16	0	0	23	17	merge_repeat		chromOut
chr12	83571073	A	G	999	11 11 11 11 11 11 11 11	30	0	0	14	18	0	0	22	27	0	0	29	8	0	0	27	21	0	0	32	13	0	0	20	10	0	0	23	16	0	0	28	12
chr12	83619711	A	G	999	11 11 11 11 11 11 11 11	20	0	0	9	19	0	0	5	15	0	0	10	21	0	0	10	19	0	0	14	25	0	0	7	20	0	0	5	16	0	0	12	28	merge_repeat		chromOut
chr12	84280529	G	A	999	11 11 11 11 11 11 11 11	21	0	0	9	12	1	0	14	9	0	0	16	16	0	0	14	23	0	0	17	17	0	0	15	16	0	0	12	14	0	0	9	14	merge_repeat	trfMask	chromOut	simple
chr12	84315897	A	C	999	11 11 11 11 11 11 11 11	53	0	0	33	38	0	0	27	44	0	0	36	41	0	0	42	38	0	0	38	34	0	0	24	35	0	0	28	25	0	0	35	36
chr12	84600868	A	C	999	11 11 11 11 11 11 11 11	36	0	0	18	18	0	0	24	15	0	0	28	16	0	0	32	20	0	0	27	12	0	0	30	16	0	0	34	29	0	0	34	32
chr12	86395809	T	C	999	11 11 11 11 11 11 11 11	45	0	0	35	21	0	0	40	24	0	0	21	26	0	0	36	31	0	0	33	24	0	0	43	18	0	0	26	19	0	0	30	17
chr12	87930511	T	G	999	11 11 11 11 11 11 11 11	48	0	0	37	25	0	0	31	24	0	0	30	22	0	0	33	27	0	0	41	17	0	0	25	26	0	0	35	23	1	0	26	21	merge_repeat	trfMask	chromOut	simple		segmentDup
chr12	88848080	C	A	999	11 11 11 11 11 11 11 11	29	0	0	6	32	1	0	11	29	0	0	11	47	0	0	17	38	0	0	18	29	0	0	11	31	0	0	9	26	0	0	9	20	merge_repeat		chromOut
chr12	90002031	C	T	999	11 11 11 11 11 11 11 11	58	0	0	37	42	0	0	35	36	0	0	19	41	0	0	26	37	0	0	31	32	0	0	27	31	0	0	30	29	0	0	23	42
chr12	90002040	T	C	999	11 11 11 11 11 11 11 11	58	0	0	40	41	0	0	34	36	0	0	21	41	0	0	26	35	0	0	29	29	0	0	29	32	0	0	27	31	0	0	24	40
chr12	90002044	G	A	999	11 11 11 11 11 11 11 11	57	0	0	40	42	0	0	34	39	0	0	21	42	0	0	26	37	0	0	30	31	0	0	29	32	0	0	24	33	0	0	24	39
chr12	90002245	C	A	999	11 11 11 11 11 11 11 11	46	0	0	30	30	0	0	31	23	0	0	41	25	0	0	30	18	0	0	38	20	0	0	28	19	0	0	27	35	0	0	22	24
chr12	93258807	T	A	999	11 11 11 11 11 11 11 11	43	0	0	25	23	0	0	31	18	0	0	30	25	0	0	29	18	0	0	26	21	0	1	20	22	0	0	20	27	0	0	28	18	merge_repeat		chromOut		nested
chr12	93258808	A	T	999	11 11 11 11 11 11 11 11	43	0	0	25	23	0	0	31	18	0	0	30	25	0	0	29	18	0	0	26	21	0	1	20	22	0	0	20	27	0	0	28	17	merge_repeat		chromOut		nested
chr12	94304623	A	C	999	11 11 11 11 11 11 11 11	48	0	0	22	28	0	0	23	37	0	0	25	39	0	1	27	20	0	0	25	34	0	0	30	31	0	0	24	40	0	0	29	33	merge_repeat	trfMask		simple
chr12	94711853	C	G	999	11 11 11 11 11 11 11 11	33	0	0	19	29	0	0	16	26	0	0	16	31	0	0	21	40	0	0	5	31	0	0	24	26	0	0	20	34	0	0	12	21	merge_repeat		chromOut		nested
chr12	95399809	T	A	999	11 11 11 11 11 11 11 11	48	0	0	49	31	0	0	32	23	0	0	34	26	0	0	52	37	0	0	32	34	0	0	31	24	0	0	26	22	0	0	36	28	merge_repeat		chromOut
chr12	95399812	G	A	999	11 11 11 11 11 11 11 11	42	0	0	48	21	0	0	33	17	0	0	34	16	0	0	52	26	0	0	32	31	0	0	32	18	0	0	26	16	0	0	35	16	merge_repeat		chromOut
chr12	96109817	G	T	999	11 11 11 11 11 11 11 11	37	0	0	25	18	0	0	23	30	0	0	26	25	0	0	15	24	0	0	32	25	0	0	24	21	0	0	28	19	0	0	19	18
chr12	97299132	T	C	999	11 11 11 11 11 11 11 11	64	0	0	34	35	0	0	40	35	0	0	45	32	0	0	40	31	0	0	34	30	0	0	28	38	0	0	39	29	0	0	28	38
chr12	97441888	T	G	999	11 11 11 11 11 11 11 11	57	0	0	29	28	0	0	36	28	0	0	41	36	0	0	29	29	0	0	34	35	0	0	32	28	0	0	43	34	0	0	25	38
chr12	99187626	C	G	999	11 11 11 11 11 11 11 11	43	0	0	29	28	0	0	22	34	0	0	30	31	0	0	27	34	0	0	17	26	0	0	28	31	0	0	31	28	0	0	37	28	merge_repeat		chromOut
chr12	99956795	C	A	999	11 11 11 11 11 11 11 11	34	0	0	26	13	0	0	18	18	0	0	20	20	0	0	24	19	0	0	26	13	0	0	22	17	0	0	22	25	0	0	14	20
chr12	102072882	G	A	999	11 11 11 11 11 11 11 11	31	0	0	31	9	0	0	25	6	0	0	22	14	0	0	26	18	0	0	22	18	0	0	22	19	0	0	25	6	0	0	25	16
chr12	102270431	A	G	999	11 11 11 11 11 11 11 11	28	0	0	10	21	0	0	8	29	0	0	11	21	0	0	9	24	0	0	7	21	0	0	10	27	0	0	9	28	0	0	10	18
chr12	102443167	A	T	999	11 11 11 11 11 11 11 11	31	0	0	15	23	0	0	11	23	0	0	10	24	0	0	14	24	0	0	17	19	0	0	8	23	0	0	16	23	0	0	23	25
chr12	103079245	A	T	999	11 11 11 11 11 11 11 11	38	0	0	22	19	0	0	30	28	0	0	24	25	0	0	23	17	0	0	23	39	0	0	23	28	0	0	22	33	0	0	23	15	merge_repeat	trfMask	chromOut	simple
chr12	104575861	G	A	999	11 11 11 11 11 11 11 11	31	0	0	17	27	0	0	23	15	0	0	26	15	0	0	22	23	0	0	24	14	0	0	26	30	0	0	12	19	0	0	22	16	merge_repeat		chromOut		nested
chr12	105959722	C	A	999	11 11 11 11 11 11 11 11	43	0	0	26	32	0	0	31	42	0	0	24	19	0	0	22	27	0	0	26	36	0	0	27	21	0	0	30	35	0	0	25	37
chr12	105959723	T	C	999	11 11 11 11 11 11 11 11	43	0	0	26	33	0	0	31	42	0	0	24	19	0	0	22	27	0	0	26	37	0	0	27	21	0	0	30	35	0	0	25	37
chr12	106184769	A	G	999	11 11 11 11 11 11 11 11	40	0	0	26	16	0	0	25	33	0	0	32	21	0	0	35	21	0	0	24	28	0	0	24	24	0	0	22	31	0	0	20	20	merge_repeat		chromOut
chr12	107214071	C	A	999	11 11 11 11 11 11 11 11	23	0	0	13	10	0	0	12	15	0	0	24	8	0	0	19	17	0	0	10	27	0	0	17	7	0	0	13	12	0	0	17	11	merge_repeat	trfMask	chromOut	simple
chr12	107449285	T	G	999	11 11 11 11 11 11 11 11	27	0	0	19	9	0	0	20	18	0	0	21	18	0	0	18	17	0	0	17	14	0	0	15	24	0	0	12	15	0	0	15	17	merge_repeat	trfMask	chromOut	simple
chr12	107449289	T	G	999	11 11 11 11 11 11 11 11	27	0	0	21	8	0	0	20	18	0	0	22	19	0	1	18	17	0	0	15	13	0	0	16	24	0	0	12	15	0	0	15	17	merge_repeat	trfMask	chromOut	simple
chr12	108112126	G	A	999	11 11 11 11 11 11 11 11	55	0	0	33	34	0	0	35	34	0	0	40	38	0	0	24	31	0	0	30	32	0	0	38	37	0	0	30	28	0	0	19	41
chr12	108286769	A	G	999	11 11 11 11 11 11 11 11	43	0	0	32	30	0	0	31	23	0	0	26	27	0	0	30	26	0	0	38	31	0	0	31	33	0	0	26	24	0	0	23	20
chr12	108718924	C	A	999	11 11 11 11 11 11 11 11	50	0	0	20	30	0	0	20	41	0	0	28	30	0	0	36	42	0	0	39	35	0	0	37	24	0	0	31	30	0	0	16	40	merge_repeat		chromOut
chr12	110392548	C	A	999	11 11 11 11 11 11 11 11	26	0	0	34	3	0	0	21	5	0	0	25	5	0	0	34	8	0	0	21	7	0	0	30	11	0	0	36	10	0	0	28	12	merge_repeat		chromOut		nested
chr12	110392578	C	A	999	11 11 11 11 11 11 11 11	28	0	0	33	5	0	0	29	4	0	0	26	6	0	0	34	9	0	0	20	8	0	0	30	12	0	0	39	9	0	0	35	11	merge_repeat		chromOut		nested
chr12	110392600	C	A	999	11 11 11 11 11 11 11 11	32	0	0	36	5	0	0	33	3	0	0	27	7	0	0	33	6	0	0	28	4	0	0	35	7	0	0	44	6	0	1	40	10	merge_repeat		chromOut		nested
chr12	110392606	C	A	999	11 11 11 11 11 11 11 11	34	0	0	37	4	0	0	33	4	0	0	27	7	0	0	33	8	0	0	31	7	0	0	34	7	0	0	44	5	0	0	39	11	merge_repeat		chromOut		nested
chr12	110392628	C	A	999	11 11 11 11 11 11 11 11	36	0	0	34	3	0	0	35	5	0	0	28	8	0	0	34	9	0	1	39	6	0	0	30	7	0	0	46	5	0	0	37	7	merge_repeat		chromOut		nested
chr12	110392631	T	A	999	11 11 11 11 11 11 11 11	35	0	1	34	8	0	0	33	9	0	0	28	7	0	1	34	10	0	2	39	9	0	0	30	7	0	0	46	6	0	0	37	13	merge_repeat		chromOut		nested
chr12	110952552	A	G	999	11 11 11 11 11 11 11 11	54	0	0	30	40	0	0	26	42	0	0	38	36	0	0	29	28	0	0	31	31	0	0	22	36	0	0	21	43	0	0	21	33	merge_repeat		chromOut
chr12	111321407	T	C	999	11 11 11 11 11 11 11 11	36	0	0	30	19	0	0	25	11	0	0	32	23	0	0	29	21	0	0	29	28	0	0	25	22	0	0	28	20	0	0	28	18
chr12	113960504	T	A	999	11 11 11 11 11 11 11 11	42	0	0	34	35	0	0	25	34	0	0	20	22	0	0	27	30	0	2	29	25	0	1	27	28	0	0	33	18	0	0	27	18	merge_repeat		chromOut		nested	segmentDup
chr12	114437944	C	T	999	11 11 11 11 11 11 11 11	23	0	0	6	17	0	0	5	24	0	0	1	23	0	0	1	23	0	0	3	32	0	0	2	33	0	0	2	24	0	0	3	26	merge_repeat		chromOut
chr12	114979228	G	T	999	11 11 11 11 11 11 11 11	60	0	0	36	37	0	0	36	39	0	0	35	40	0	0	43	48	0	0	33	35	0	0	31	29	0	0	28	36	0	0	21	46
chr12	115015530	G	C	999	11 11 11 11 11 11 11 11	66	0	0	36	37	0	0	37	46	0	0	31	35	0	0	37	41	0	0	30	45	0	0	34	45	0	0	38	37	0	0	25	48
chr12	115138720	C	T	999	11 11 11 11 11 11 11 11	61	0	0	41	35	0	0	36	41	0	0	34	42	0	0	29	36	0	0	30	31	0	0	39	30	0	0	31	39	0	0	39	28	merge_repeat		chromOut		nested	segmentDup
chr12	115261506	A	T	999	11 11 11 11 11 11 11 11	29	0	0	18	16	0	0	19	21	0	0	16	19	0	0	18	11	0	0	14	18	0	0	16	19	0	0	19	13	0	0	16	16	merge_repeat	trfMask	chromOut	simple		segmentDup
chr12	115614557	C	G	999	11 11 11 11 11 11 11 11	60	0	0	32	33	0	0	40	29	0	0	31	36	0	0	43	33	0	0	34	26	0	0	32	34	0	0	37	36	0	0	38	30	merge_repeat		chromOut		nested
chr12	115891375	A	G	999	11 11 11 11 11 11 11 11	54	0	0	35	24	0	0	29	37	0	0	29	25	0	0	37	20	0	0	34	32	0	0	41	21	0	0	36	32	0	0	33	23
chr12	116182933	C	A	999	11 11 11 11 11 11 11 11	23	0	0	24	8	0	1	23	10	0	0	23	5	0	0	29	17	1	0	26	14	0	1	22	13	0	0	32	9	0	0	16	7	merge_repeat	trfMask	chromOut	simple
chr12	116621399	C	A	999	11 11 11 11 11 11 11 11	34	0	0	14	24	0	0	24	37	0	0	19	27	0	0	17	21	0	0	16	22	0	0	15	19	0	0	20	21	0	0	14	38	merge_repeat	trfMask	chromOut	simple
chr12	116860681	A	C	999	11 11 11 11 11 11 11 11	23	0	0	22	12	0	0	19	16	0	0	13	18	0	0	9	14	0	0	31	20	0	0	16	13	0	0	19	16	0	0	11	25
chr12	116962892	T	A	999	11 11 11 11 11 11 11 11	57	0	0	32	50	0	0	27	43	0	0	27	40	0	0	45	40	0	0	38	28	0	0	33	24	0	0	44	33	0	0	29	36
chr12	116962895	C	G	999	11 11 11 11 11 11 11 11	56	0	0	31	51	0	0	28	43	0	0	27	41	0	0	46	39	0	0	38	28	0	0	32	24	0	0	44	34	0	0	28	35
chr12	117685790	A	G	999	11 11 11 11 11 11 11 11	56	0	0	52	25	0	0	41	24	0	0	36	21	0	0	32	29	0	0	37	24	0	0	29	27	0	0	40	21	0	0	40	27
chr12	117685855	A	G	999	11 11 11 11 11 11 11 11	48	0	0	42	18	0	0	34	19	0	0	28	20	0	0	34	38	0	0	36	24	0	0	24	31	0	0	37	22	0	0	41	25
chr12	119227691	G	A	999	11 11 11 11 11 11 11 11	45	0	0	27	43	0	0	21	24	0	0	39	27	0	0	41	41	0	0	36	40	0	0	26	33	1	0	34	28	0	0	32	38	merge_repeat		chromOut