chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr10	3114193	G	T,C	852	12 11 12 12 12 12 12 12	212	4	0	24	222	0	0	26	227	0	2	17	291	0	2	17	260	0	0	14	252	0	1	9	218	1	0	14	197	2	1	19	227	merge_repeat			simple
chr10	3115978	A	C	972	11 11 11 11 11 11 11 11	119	1	0	115	8	2	0	148	10	2	0	177	6	3	0	188	9	0	0	128	7	0	0	117	2	0	0	131	6	2	0	121	10	merge_repeat			simple
chr10	3617109	T	C	999	11 11 11 11 11 11 11 11	36	0	0	17	32	0	0	30	28	0	0	18	33	0	0	21	31	0	0	20	34	0	0	17	22	0	0	14	22	0	0	19	24
chr10	3617132	T	C	999	11 11 11 11 11 11 11 11	38	0	0	18	24	0	0	29	23	0	0	16	29	0	0	22	25	0	0	17	30	0	0	18	20	0	0	18	22	0	0	18	20
chr10	4435652	A	C	999	11 11 11 11 11 11 11 11	30	0	0	10	20	0	0	17	22	0	0	15	22	0	0	14	30	0	0	20	31	0	0	8	24	0	0	9	24	0	0	13	26	merge_repeat		chromOut
chr10	4731748	T	C	999	11 11 11 11 11 11 11 11	56	0	0	30	36	0	0	41	22	0	0	35	26	0	0	52	35	0	0	47	42	0	0	48	31	0	0	32	24	0	0	40	33
chr10	5099997	C	T	999	11 11 11 11 11 11 11 11	63	0	0	39	36	0	0	28	40	0	0	32	37	0	0	31	32	0	0	36	27	0	0	35	33	0	0	27	40	0	0	35	33
chr10	5321907	A	G	999	11 11 11 11 11 11 11 11	32	0	0	30	12	0	0	24	15	0	0	19	20	0	0	17	31	0	0	20	25	0	0	20	18	0	0	24	22	0	0	20	12	merge_repeat		chromOut
chr10	5634909	C	T	999	11 11 11 11 11 11 11 11	45	0	0	36	22	0	0	29	16	0	0	36	30	0	0	41	30	0	0	30	27	0	0	34	28	0	0	36	39	0	0	30	21
chr10	6366915	T	G	999	11 11 11 11 11 11 11 11	30	0	0	30	8	0	0	37	13	0	0	31	6	0	0	22	8	0	0	29	4	0	0	25	8	0	0	28	6	0	0	25	5
chr10	6744201	C	A	999	11 11 11 11 11 11 11 11	24	0	0	22	5	0	0	27	1	0	0	20	15	0	0	26	9	0	0	20	4	0	0	23	5	0	0	24	4	0	0	24	4	merge_repeat		chromOut		nested
chr10	7494393	T	A	999	11 11 11 11 11 11 11 11	44	0	0	28	32	0	0	27	35	0	0	26	32	0	0	35	38	0	0	20	33	0	0	26	31	0	0	29	23	0	0	27	17	merge_repeat		chromOut	simple	nested	segmentDup
chr10	7579953	T	G	999	11 11 11 11 11 11 11 11	30	0	0	20	15	0	0	23	15	0	0	23	15	0	0	24	23	0	0	16	20	0	0	25	18	0	0	23	20	0	0	8	22	merge_repeat		chromOut
chr10	7580199	T	C	999	11 11 11 11 11 11 11 11	23	0	0	20	12	0	0	18	9	0	0	11	12	0	0	19	16	0	0	22	12	0	0	23	6	0	0	19	9	0	0	24	11	merge_repeat		chromOut
chr10	7584033	C	G	999	11 11 11 11 11 11 11 11	22	0	0	33	3	0	0	22	6	0	0	22	3	0	0	23	2	0	0	30	7	0	0	19	3	0	0	21	5	0	0	20	9	merge_repeat		chromOut		nested
chr10	7584043	C	G	999	11 11 11 11 11 11 11 11	20	0	0	32	4	0	0	19	7	0	0	17	4	0	0	23	2	0	0	25	7	0	0	20	3	0	0	18	2	0	0	18	11	merge_repeat		chromOut		nested
chr10	7584045	C	G	999	11 11 11 11 11 11 11 11	20	0	0	32	4	0	0	19	7	0	0	17	4	0	0	23	2	0	0	25	7	0	0	20	3	0	0	18	2	0	0	18	11	merge_repeat		chromOut		nested
chr10	7585867	A	G	999	11 11 11 11 11 11 11 11	27	0	0	23	12	0	0	32	6	0	0	20	7	0	0	31	15	0	0	15	16	0	0	30	21	0	0	29	9	0	0	25	5	merge_repeat		chromOut		nested
chr10	7870243	A	G	999	11 11 11 11 11 11 11 11	21	0	0	9	15	0	0	9	17	0	0	11	10	0	0	15	16	1	0	11	27	0	0	11	27	0	0	15	23	0	0	5	20
chr10	7881579	C	A	999	11 11 11 11 11 11 11 11	53	0	0	24	29	0	0	37	34	0	0	38	36	0	0	34	33	0	0	39	26	0	0	39	39	0	0	43	37	0	0	37	40	merge_repeat		chromOut		nested
chr10	7976886	T	C	999	11 11 11 11 11 11 11 11	32	0	0	6	28	0	0	13	26	0	0	12	27	0	0	17	25	0	0	17	46	0	0	7	26	0	0	11	30	0	0	6	26
chr10	7976888	T	C	999	11 11 11 11 11 11 11 11	32	0	0	6	29	0	0	13	26	0	0	12	27	0	0	17	25	0	0	17	46	0	0	7	26	0	0	11	30	0	0	6	26
chr10	7976952	T	C	999	11 11 11 11 11 11 11 11	22	0	0	9	19	0	0	18	20	0	0	11	17	0	0	17	19	0	0	13	28	0	0	7	15	0	0	11	21	0	0	8	19
chr10	8819953	C	A	999	11 11 11 11 11 11 11 11	40	0	0	33	25	0	0	24	18	0	0	24	25	0	0	36	21	0	0	28	28	0	0	27	16	0	0	25	15	0	0	31	22	merge_repeat		chromOut
chr10	9358596	T	C	999	11 11 11 11 11 11 11 11	44	0	0	39	25	0	0	39	27	0	0	38	39	0	0	36	26	0	0	42	34	0	0	41	25	0	0	23	21	0	0	38	18	merge_repeat		chromOut		nested
chr10	12051165	C	A	999	11 11 11 11 11 11 11 11	48	0	0	27	21	0	0	32	21	0	0	29	34	0	0	38	18	0	0	35	28	0	0	34	28	0	0	39	18	0	0	27	21	merge_repeat		chromOut	simple
chr10	13117523	T	C	999	11 11 11 11 11 11 11 11	40	0	0	21	19	0	0	30	29	0	0	27	25	0	0	32	14	0	0	25	27	0	0	26	22	0	0	24	24	0	0	24	22
chr10	15079542	T	G	999	11 11 11 11 11 11 11 11	44	0	0	43	36	0	0	33	34	0	0	41	29	0	0	29	35	0	0	22	22	0	0	33	25	0	0	25	47	0	0	40	40
chr10	17761947	G	T	999	11 11 11 11 11 11 11 11	24	0	0	5	29	0	0	5	28	0	0	3	38	0	0	7	36	0	0	5	33	0	0	4	23	0	0	6	37	0	0	3	21
chr10	18047992	T	G	999	11 11 11 11 11 11 11 11	34	0	0	30	16	0	0	32	14	0	0	24	18	0	0	20	14	0	0	24	35	0	0	29	17	0	0	34	16	0	0	24	19
chr10	18249627	T	C	999	11 11 11 11 11 11 11 11	50	0	0	38	32	0	0	35	25	0	0	22	35	0	0	28	24	0	0	30	35	0	0	20	37	0	0	20	30	0	0	23	32	merge_repeat		chromOut
chr10	18812801	T	A	999	11 11 11 11 11 11 11 11	27	0	0	8	38	0	0	8	33	0	0	9	30	0	0	8	30	0	0	10	23	0	0	8	42	0	0	5	22	0	0	9	28
chr10	18815132	C	T	999	11 11 11 11 11 11 11 11	45	0	0	23	22	0	0	26	20	0	0	36	27	0	0	29	18	0	0	28	22	0	0	33	26	0	0	35	23	0	0	27	28	merge_repeat		chromOut		nested
chr10	19802786	A	C	999	11 11 11 11 11 11 11 11	28	0	0	14	22	0	0	24	17	0	0	23	27	0	0	24	37	0	0	21	30	0	0	16	23	0	0	9	19	0	0	24	19	merge_repeat		chromOut
chr10	19802826	T	C	999	11 11 11 11 11 11 11 11	35	0	0	11	28	0	0	17	21	0	0	18	29	0	0	21	44	0	0	17	37	0	0	15	28	0	0	11	24	0	0	19	21	merge_repeat		chromOut
chr10	20903224	A	C	999	11 11 11 11 11 11 11 11	49	1	0	26	30	0	0	36	36	0	0	30	26	0	0	37	33	0	0	36	34	0	0	28	32	0	0	30	19	0	0	36	22	merge_repeat		chromOut
chr10	21578315	A	T	999	11 11 11 11 11 11 11 11	22	0	0	8	14	0	0	15	17	0	0	19	20	0	0	18	34	0	0	24	25	0	0	12	22	0	0	18	18	0	0	15	15	merge_repeat		chromOut		nested
chr10	21578325	A	T	999	11 11 11 11 11 11 11 11	27	0	0	12	15	0	0	16	17	0	0	19	20	0	0	16	36	0	0	26	22	0	0	19	20	0	0	19	18	0	0	16	15	merge_repeat		chromOut		nested
chr10	21578337	A	T	999	11 11 11 11 11 11 11 11	31	0	0	13	18	0	0	17	19	0	0	22	21	0	0	21	29	0	0	30	21	1	0	20	19	0	0	20	16	0	0	17	15	merge_repeat		chromOut		nested
chr10	21578352	T	A	999	11 11 11 11 11 11 11 11	32	0	0	17	16	0	0	20	18	0	0	23	15	0	0	25	26	0	0	30	20	0	0	20	17	0	0	22	18	0	0	17	15	merge_repeat		chromOut		nested
chr10	21578384	C	G	999	11 11 11 11 11 11 11 11	28	0	0	19	14	0	0	21	11	0	0	21	8	0	0	28	21	0	0	34	17	0	0	17	11	0	0	27	14	0	0	20	12	merge_repeat		chromOut		nested
chr10	21578385	A	T	999	11 11 11 11 11 11 11 11	27	0	0	19	14	0	0	19	11	0	0	20	8	0	0	28	21	0	0	33	17	0	0	16	11	0	0	27	14	0	0	18	12	merge_repeat		chromOut		nested
chr10	21578390	C	T	999	11 11 11 11 11 11 11 11	30	0	0	20	14	0	0	23	11	0	0	22	8	0	0	28	21	0	0	33	17	0	0	18	12	1	0	28	14	0	0	19	13	merge_repeat		chromOut		nested
chr10	21578407	A	T	999	11 11 11 11 11 11 11 11	25	0	0	19	12	0	0	24	10	0	0	17	8	0	0	26	17	0	0	31	16	0	0	19	10	0	0	27	13	0	0	21	7	merge_repeat		chromOut		nested
chr10	21578421	A	T	999	11 11 11 11 11 11 11 11	23	0	0	21	11	0	0	25	9	0	0	15	8	0	0	29	18	0	0	29	14	0	0	19	8	0	0	22	9	0	0	20	8	merge_repeat		chromOut		nested
chr10	21578433	G	T	999	11 11 11 11 11 11 11 11	21	0	0	20	10	0	0	23	7	0	0	14	7	1	0	30	16	0	0	30	13	0	0	24	5	0	0	20	9	0	0	21	7	merge_repeat		chromOut		nested
chr10	22490437	A	C	999	11 11 11 11 11 11 11 11	23	0	0	16	10	0	0	17	22	0	0	18	16	0	0	11	12	0	0	29	14	0	0	13	22	0	0	14	18	0	0	19	21	merge_repeat		chromOut			segmentDup
chr10	23132135	A	C	999	11 11 11 11 11 11 11 11	43	0	0	36	23	0	0	24	22	0	0	37	24	0	0	37	29	0	0	28	27	0	0	29	14	0	0	26	18	0	0	33	31	merge_repeat		chromOut
chr10	24387883	T	A	999	11 11 11 11 11 11 11 11	25	0	0	18	7	0	0	24	14	0	0	21	5	0	0	36	10	0	0	25	13	0	0	14	17	0	0	21	15	0	0	24	9	merge_repeat	trfMask	chromOut	simple
chr10	24574272	A	C	999	11 11 11 11 11 11 11 11	38	0	0	15	35	0	0	7	31	0	0	22	34	0	0	13	25	0	0	21	36	0	0	13	35	0	0	14	27	0	0	15	30	merge_repeat	trfMask	chromOut	simple
chr10	24662084	T	G	999	11 11 11 11 11 11 11 11	45	0	0	25	20	0	0	32	37	0	0	38	37	0	0	31	47	0	0	27	31	0	0	23	29	0	0	16	30	0	0	32	23	merge_repeat		chromOut
chr10	24959359	T	C	999	11 11 11 11 11 11 11 11	37	0	0	23	33	0	0	26	41	0	0	23	39	0	0	27	37	0	0	27	35	0	0	12	34	0	0	18	30	0	1	6	30
chr10	26360532	T	C	999	11 11 11 11 11 11 11 11	24	0	0	18	12	0	0	15	15	0	0	27	16	0	0	21	20	0	0	18	16	0	0	12	12	0	0	13	12	0	0	21	10	merge_repeat	trfMask	chromOut	simple
chr10	26361846	T	A	999	11 11 11 11 11 11 11 11	54	0	0	24	35	0	0	23	32	0	0	23	41	0	0	29	31	0	0	30	28	0	0	34	34	0	0	23	33	0	0	29	25	merge_repeat		chromOut
chr10	26558882	T	G	999	11 11 11 11 11 11 11 11	42	0	0	23	21	0	0	19	23	0	0	20	22	0	0	26	23	0	0	26	22	0	0	24	24	0	1	14	30	0	0	25	29	merge_repeat		chromOut
chr10	26901048	C	A	999	11 11 11 11 11 11 11 11	23	0	0	18	21	0	0	13	13	0	0	13	14	0	0	11	14	0	0	22	22	0	0	17	16	0	0	17	16	0	0	8	15	merge_repeat		chromOut	simple	nested
chr10	27103331	C	T	999	11 11 11 11 11 11 11 11	30	0	0	14	16	0	0	19	16	0	0	23	10	0	0	17	17	0	0	25	11	0	0	24	9	0	0	22	8	0	0	25	18	merge_repeat		chromOut
chr10	27212014	C	G	999	11 11 11 11 11 11 11 11	47	0	0	20	31	0	0	35	30	0	0	20	39	0	0	29	18	0	0	32	31	0	0	26	27	0	0	33	32	0	0	32	40
chr10	28038591	T	G	999	11 11 11 11 11 11 11 11	45	0	0	28	17	0	0	27	35	0	0	31	35	0	0	31	38	0	0	27	25	0	0	29	27	0	0	36	22	0	0	30	20	merge_repeat	trfMask	chromOut	simple
chr10	29612666	C	A	999	11 11 11 11 11 11 11 11	68	0	0	35	33	0	0	40	51	0	0	42	42	0	0	45	44	0	0	35	40	0	0	44	47	0	0	29	43	0	0	39	45
chr10	29879217	C	T	999	11 11 11 11 11 11 11 11	58	0	0	39	25	0	0	40	26	0	0	41	17	1	0	36	24	1	0	43	21	0	0	34	28	0	0	50	21	0	0	35	24	merge_repeat		chromOut
chr10	30129523	A	G	999	11 11 11 11 11 11 11 11	27	0	0	25	9	0	0	30	10	0	0	23	4	0	0	35	16	0	0	22	12	0	0	32	8	0	0	23	12	0	0	22	12	merge_repeat		chromOut
chr10	30130283	T	A	999	11 11 11 11 11 11 11 11	48	0	0	28	28	0	0	33	29	0	0	23	26	0	0	28	21	0	0	28	35	0	0	22	26	0	0	24	29	0	0	22	26	merge_repeat		chromOut
chr10	30130284	G	C	999	11 11 11 11 11 11 11 11	48	0	0	28	28	0	0	33	29	0	0	23	26	0	0	27	21	0	0	28	35	0	0	22	26	0	0	24	29	0	0	22	27	merge_repeat		chromOut
chr10	33491218	G	A	999	11 11 11 11 11 11 11 11	48	0	0	31	34	0	0	37	41	0	0	15	33	0	0	27	38	0	0	36	42	0	0	23	26	0	0	23	33	0	0	38	28	merge_repeat		chromOut		nested
chr10	33660183	A	G	999	11 11 11 11 11 11 11 11	27	0	0	11	25	0	0	10	30	0	0	8	30	0	0	6	31	0	0	13	15	0	0	12	19	1	0	7	19	0	0	12	29	merge_repeat		chromOut		nested
chr10	33660235	A	G	999	11 11 11 11 11 11 11 11	27	0	0	17	21	0	0	19	22	0	0	13	14	0	0	11	21	0	0	22	13	0	0	19	8	1	0	18	15	0	0	15	27	merge_repeat		chromOut		nested
chr10	34378131	C	T	999	11 11 11 11 11 11 11 11	41	0	0	35	27	0	0	16	25	0	0	30	23	0	0	24	31	0	0	27	26	0	0	27	37	0	0	27	29	0	0	19	34	merge_repeat		chromOut
chr10	34378142	A	G	999	11 11 11 11 11 11 11 11	48	0	0	38	32	0	0	19	29	0	0	27	32	0	0	26	36	0	0	24	29	0	0	21	44	0	0	28	37	0	0	15	40	merge_repeat		chromOut
chr10	35817557	A	G	999	11 11 11 11 11 11 11 11	56	0	0	43	27	0	0	42	23	0	0	32	33	0	0	30	26	0	0	38	26	0	0	37	25	0	0	34	27	0	0	35	32	merge_repeat		chromOut		nested
chr10	36889624	T	A	999	11 11 11 11 11 11 11 11	49	0	0	21	41	0	0	18	31	0	0	26	31	0	0	21	45	0	0	28	27	0	0	21	34	0	0	18	33	0	0	20	45	merge_repeat		chromOut		nested
chr10	37003985	C	A	999	11 11 11 11 11 11 11 11	23	0	0	9	17	0	0	18	18	0	0	13	13	0	0	14	17	0	0	13	14	0	0	12	14	0	0	5	25	0	0	6	17	merge_repeat		chromOut
chr10	37051276	T	C	999	11 11 11 11 11 11 11 11	52	0	0	38	31	0	0	32	37	0	0	26	36	0	0	28	34	0	0	27	28	0	0	30	24	0	0	43	31	0	0	17	35	merge_repeat		chromOut		nested
chr10	37646249	C	G	999	11 11 11 11 11 11 11 11	40	0	0	14	26	0	0	26	30	0	0	25	18	0	0	19	26	0	0	35	35	0	0	18	31	0	0	17	24	0	0	24	23	merge_repeat		chromOut		nested
chr10	39395929	A	T	999	11 11 11 11 11 11 11 11	30	0	0	19	11	0	0	24	18	0	0	29	13	0	0	24	22	0	0	28	27	0	0	22	19	0	0	18	15	0	0	23	12	merge_repeat	trfMask	chromOut	simple
chr10	39395995	G	T,A	999	11 11 12 11 12 11 12 11	25	0	0	18	7	0	0	21	12	0	0	27	10	0	0	25	9	0	0	35	17	0	0	27	9	0	0	28	7	0	0	25	7	merge_repeat		chromOut
chr10	41879825	A	G	999	11 11 11 11 11 11 11 11	35	0	0	15	20	0	0	17	32	0	0	21	24	0	0	39	33	0	0	23	26	0	0	16	27	0	0	22	37	0	0	19	30
chr10	41914176	T	C	999	11 11 11 11 11 11 11 11	41	0	0	26	25	0	0	30	22	0	0	27	24	0	0	35	32	0	0	37	27	0	0	21	20	0	0	23	21	0	0	25	18	merge_repeat		chromOut
chr10	43251622	A	T	999	11 11 11 11 11 11 11 11	47	0	1	26	27	0	0	32	39	0	0	38	24	0	0	27	28	0	0	23	28	0	0	23	33	0	1	33	22	0	0	29	18	merge_repeat		chromOut		nested
chr10	43565959	A	G	999	11 11 11 11 11 11 11 11	51	0	0	31	20	0	0	31	21	0	0	35	17	0	0	47	29	0	0	36	25	0	0	32	24	0	0	45	22	0	0	32	25	merge_repeat		chromOut
chr10	43603813	T	A	999	11 11 11 11 11 11 11 11	39	0	0	25	14	0	0	27	24	0	0	34	23	0	0	27	31	0	0	25	36	0	0	24	27	0	0	27	21	0	0	26	21	merge_repeat	trfMask	chromOut	simple	nested
chr10	44460981	C	A	999	11 11 11 11 11 11 11 11	43	0	0	27	32	0	0	24	32	0	0	31	26	0	0	19	24	0	0	23	25	0	0	31	20	0	0	30	17	0	0	27	27	merge_repeat	trfMask	chromOut	simple
chr10	44460989	C	A	999	11 11 11 11 11 11 11 11	43	0	0	26	31	0	0	25	29	0	0	31	25	0	0	18	25	0	0	24	24	0	0	30	23	0	0	30	16	0	0	25	29	merge_repeat	trfMask	chromOut	simple
chr10	44709520	A	G	999	11 11 11 11 11 11 11 11	29	0	0	20	23	0	0	20	18	0	0	16	13	0	0	37	18	0	0	12	22	0	0	26	21	0	0	22	20	0	0	29	16
chr10	44709521	G	C	999	11 11 11 11 11 11 11 11	29	0	0	20	23	0	0	20	17	0	0	16	13	0	0	37	18	0	0	12	22	0	0	26	21	0	0	22	20	0	0	29	16
chr10	44709522	C	A	999	11 11 11 11 11 11 11 11	29	0	0	20	23	0	0	20	18	0	0	16	13	0	0	37	18	0	0	12	22	0	0	26	21	0	0	22	20	0	0	29	16
chr10	44709530	G	T	999	11 11 11 11 11 11 11 11	35	0	0	23	22	0	0	22	19	0	0	22	13	0	0	38	19	0	0	17	25	0	0	31	23	0	0	24	21	0	0	27	16
chr10	44709536	C	A	999	11 11 11 11 11 11 11 11	37	0	0	25	22	0	0	22	19	0	0	24	13	0	0	36	20	0	0	17	24	0	0	34	23	0	0	24	21	0	0	27	18
chr10	45092170	T	A	999	11 11 11 11 11 11 11 11	46	0	0	25	26	0	0	24	30	0	0	24	28	0	0	28	25	0	0	38	24	0	0	26	20	0	0	32	29	0	0	31	31	merge_repeat				nested
chr10	45961027	G	T	999	11 11 11 11 11 11 11 11	26	0	0	7	28	0	0	2	32	0	0	9	28	0	0	6	29	0	0	6	25	0	0	9	21	0	0	5	28	0	0	6	20
chr10	47001619	G	A	999	11 11 11 11 11 11 11 11	26	0	0	25	16	0	0	17	18	0	0	13	13	0	0	14	15	0	0	22	20	0	0	17	18	0	0	22	18	0	0	16	12	merge_repeat		chromOut		nested
chr10	47214705	C	T	999	11 11 11 11 11 11 11 11	58	0	0	33	34	0	0	39	33	0	0	34	25	0	0	35	44	0	0	27	33	0	0	30	32	0	0	31	27	0	0	32	38	merge_repeat		chromOut		nested
chr10	47214707	T	C	999	11 11 11 11 11 11 11 11	58	0	0	32	34	0	0	39	33	0	0	34	25	0	0	35	44	0	0	27	33	0	0	30	32	0	0	31	27	0	0	32	38	merge_repeat		chromOut		nested
chr10	48183761	C	T	999	11 11 11 11 11 11 11 11	46	0	0	34	31	0	1	21	24	0	0	29	30	0	0	26	40	0	0	26	39	0	0	34	33	0	0	39	38	0	0	28	32	merge_repeat		chromOut
chr10	48438742	C	T	999	11 11 11 11 11 11 11 11	37	0	0	26	32	0	0	29	26	0	0	35	21	0	0	41	31	0	0	27	29	0	0	23	14	0	0	33	21	0	0	27	27	merge_repeat		chromOut
chr10	48609520	T	G	999	11 11 11 11 11 11 11 11	51	0	0	45	11	0	0	47	22	0	0	41	31	0	0	47	26	0	0	26	27	0	0	33	23	0	0	30	21	0	0	35	24	merge_repeat		chromOut		nested
chr10	48898160	A	G	999	11 11 11 11 11 11 11 11	33	0	0	23	10	0	0	22	20	0	0	18	20	0	0	23	25	0	0	15	24	0	0	23	27	0	0	28	15	0	0	18	16	merge_repeat		chromOut		nested
chr10	49467712	G	T	999	11 11 11 11 11 11 11 11	29	0	0	19	20	0	0	19	26	0	0	18	36	0	0	33	22	0	0	24	25	0	0	21	12	0	0	31	27	0	0	11	18	merge_repeat		chromOut
chr10	49899555	T	A	999	11 11 11 11 11 11 11 11	27	0	0	26	8	0	0	26	8	0	0	26	9	0	0	29	5	0	0	26	4	0	0	16	11	0	0	20	9	0	0	30	8
chr10	50301607	A	C	999	11 11 11 11 11 11 11 11	59	0	0	33	38	0	0	34	43	0	0	32	35	0	0	31	45	0	0	36	43	0	0	33	36	0	0	36	42	0	0	27	32	merge_repeat		chromOut		nested
chr10	51651787	A	T	999	11 11 11 11 11 11 11 11	35	0	0	11	28	0	0	19	20	0	0	17	18	0	0	25	23	0	0	21	27	0	0	16	34	0	0	31	29	0	0	26	26	merge_repeat	trfMask	chromOut	simple
chr10	52508203	T	C	999	11 11 11 11 11 11 11 11	43	0	0	42	27	0	0	29	23	0	0	31	28	0	0	31	23	0	0	36	28	0	0	23	29	0	0	29	29	0	0	17	26	merge_repeat		chromOut
chr10	57099640	A	G	999	11 11 11 11 11 11 11 11	41	0	0	19	22	0	0	17	35	0	0	20	25	0	0	23	30	0	0	26	30	0	0	20	40	0	0	20	30	0	0	16	28	merge_repeat		chromOut	simple	nested
chr10	57565714	C	G	999	11 11 11 11 11 11 11 11	36	0	0	19	25	0	0	27	25	0	0	29	22	0	0	31	30	0	0	24	17	0	0	23	13	0	0	21	21	0	0	28	20	merge_repeat		chromOut
chr10	57843949	A	T	999	11 11 11 11 11 11 11 11	48	0	0	23	32	0	0	32	26	0	0	27	21	0	0	32	27	0	0	35	27	0	0	29	25	0	0	35	28	0	0	29	30	merge_repeat		chromOut		nested
chr10	58225195	T	C	999	11 11 11 11 11 11 11 11	498	0	4	537	39	1	3	532	56	0	4	546	101	0	7	642	104	1	7	615	101	0	5	531	83	0	7	542	62	0	3	450	45	merge_repeat					segmentDup
chr10	58225201	A	G	999	11 11 11 11 11 11 11 11	445	0	0	454	49	0	1	453	64	1	0	483	107	0	0	581	113	0	0	545	109	0	0	478	90	1	0	478	70	0	0	389	56	merge_repeat					segmentDup
chr10	58225202	T	G	999	11 11 11 11 11 11 11 11	445	0	0	456	47	0	1	458	64	0	0	486	108	0	0	583	112	0	0	547	109	0	0	477	90	0	0	480	71	0	0	391	54	merge_repeat					segmentDup
chr10	58225207	C	G	999	11 11 11 11 11 11 11 11	497	0	0	504	51	0	1	493	66	0	0	542	109	0	0	653	113	0	0	613	110	0	0	551	88	0	0	549	73	0	0	439	58	merge_repeat					segmentDup
chr10	58225221	A	C	999	11 11 11 11 11 11 11 11	471	0	0	460	54	0	0	443	64	0	0	498	112	0	0	607	113	0	0	565	109	0	0	510	93	0	0	509	75	0	0	412	59	merge_repeat					segmentDup
chr10	58232880	A	G	999	11 11 11 11 11 11 11 11	170	0	0	13	268	0	0	13	253	0	0	11	215	0	0	9	201	0	1	6	195	0	0	6	164	0	0	15	248	0	0	5	250	merge_repeat					segmentDup
chr10	58232881	T	G	999	11 11 11 11 11 11 11 11	170	0	0	13	267	0	0	13	253	0	0	11	215	0	0	9	201	0	1	6	195	0	0	6	164	0	1	15	247	0	0	5	249	merge_repeat					segmentDup
chr10	58232886	C	G	999	11 11 11 11 11 11 11 11	174	0	0	19	280	0	0	15	255	0	0	11	219	0	0	9	205	0	1	6	196	0	0	7	167	0	0	16	249	0	0	10	256	merge_repeat					segmentDup
chr10	58232900	A	C	999	11 11 11 11 11 11 11 11	130	0	0	25	231	0	0	18	225	0	0	15	165	0	0	14	161	0	1	9	135	0	0	8	122	0	0	21	198	0	0	17	218	merge_repeat					segmentDup
chr10	58307802	G	A	999	11 11 11 11 11 11 11 11	44	0	0	20	24	0	0	33	24	0	0	47	15	0	0	38	27	0	0	31	20	0	0	36	23	0	0	33	29	0	0	34	22	merge_repeat	trfMask	chromOut	simple
chr10	59167857	C	A	999	11 11 11 11 11 11 11 11	29	0	0	12	17	0	0	16	15	0	0	17	20	0	0	20	17	0	0	16	16	0	0	13	17	0	0	14	23	0	0	11	22	merge_repeat		chromOut
chr10	59905229	A	G	999	11 11 11 11 11 11 11 11	21	0	0	2	27	0	0	4	22	0	0	4	17	0	0	12	22	0	0	7	18	0	0	8	13	0	0	5	19	0	0	12	19	merge_repeat		chromOut
chr10	59905231	A	G	999	11 11 11 11 11 11 11 11	21	0	0	2	27	0	0	4	23	0	0	4	17	0	0	12	24	0	0	7	18	0	0	8	13	0	0	5	19	0	0	12	20	merge_repeat		chromOut
chr10	59905234	T	C	999	11 11 11 11 11 11 11 11	21	0	0	2	27	0	0	4	23	0	0	4	17	0	0	12	24	0	0	7	19	0	0	8	13	0	0	4	18	0	0	12	19	merge_repeat		chromOut
chr10	60286922	A	G	999	11 11 11 11 11 11 11 11	45	0	0	20	25	0	0	35	24	0	0	27	27	0	0	23	37	0	0	31	28	0	0	25	35	0	0	27	32	0	0	26	24	merge_repeat		chromOut		nested
chr10	60298433	G	C	999	11 11 11 11 11 11 11 11	33	0	0	21	12	0	0	41	19	0	0	32	19	0	0	47	13	0	0	29	16	0	0	30	10	0	0	40	17	0	0	18	17
chr10	60305432	T	C	999	11 11 11 11 11 11 11 11	39	0	0	30	28	0	0	23	16	0	0	21	31	0	0	28	41	0	0	18	21	0	0	32	22	0	0	25	18	0	0	24	25
chr10	60310210	G	T	999	11 11 11 11 11 11 11 11	44	0	0	22	25	0	0	18	30	0	0	21	35	0	0	24	34	0	0	17	32	0	0	21	28	0	0	22	30	0	0	20	24
chr10	60317459	C	A	999	11 11 11 11 11 11 11 11	30	0	0	12	26	0	0	23	29	0	0	20	21	0	0	20	23	0	0	24	37	0	0	18	22	0	0	17	20	0	0	12	18
chr10	60328272	T	C	999	11 11 11 11 11 11 11 11	42	0	0	15	27	0	0	26	30	0	0	34	27	0	0	35	25	0	0	40	39	0	0	29	28	0	0	31	32	0	0	28	29
chr10	60339952	G	T	999	11 11 11 11 11 11 11 11	44	0	0	22	28	0	0	26	33	0	0	20	33	0	0	34	33	0	0	41	29	0	0	26	23	0	0	26	18	0	0	30	23	merge_repeat		chromOut		nested
chr10	60558003	G	T	999	11 11 11 11 11 11 11 11	48	0	0	33	35	0	0	32	30	0	0	28	20	0	0	39	30	0	0	41	36	0	0	35	25	0	0	32	30	0	0	41	20
chr10	60589401	C	G	999	11 11 11 11 11 11 11 11	20	0	0	28	5	0	0	25	3	0	0	24	1	0	0	32	4	0	0	27	7	0	0	26	1	0	0	16	4	0	0	24	1
chr10	60673315	A	G	999	11 11 11 11 11 11 11 11	55	0	0	24	35	0	0	29	30	0	0	24	33	0	0	34	32	0	0	30	31	0	0	30	25	0	0	29	38	0	0	38	26	merge_repeat		chromOut		nested
chr10	63069935	T	A	999	11 11 11 11 11 11 11 11	29	0	0	30	12	0	0	16	13	0	0	29	17	0	0	34	18	0	0	25	18	0	0	17	18	0	0	24	17	0	0	23	12
chr10	63069943	T	A	999	11 11 11 11 11 11 11 11	33	0	0	30	13	0	0	19	14	0	0	29	15	0	0	33	16	0	0	23	18	0	0	18	16	0	0	24	19	0	0	24	9
chr10	63070537	C	A	999	11 11 11 11 11 11 11 11	20	0	0	23	3	0	0	13	8	0	0	18	8	0	0	18	12	0	0	14	6	0	0	17	4	0	0	21	5	0	0	17	6	merge_repeat	trfMask	chromOut	simple
chr10	63070538	A	C	999	11 11 11 11 11 11 11 11	21	0	0	23	5	0	0	13	8	0	0	18	7	0	1	18	11	0	0	14	9	0	0	17	5	0	0	21	6	0	0	17	7	merge_repeat	trfMask	chromOut	simple
chr10	63070545	T	C	999	11 11 11 11 11 11 11 11	24	0	0	24	8	0	0	13	13	0	0	17	11	0	1	19	16	0	0	15	13	0	0	17	7	0	0	21	7	0	0	17	11	merge_repeat	trfMask	chromOut	simple
chr10	63070547	T	A	999	11 11 11 11 11 11 11 11	22	0	0	24	7	0	0	14	17	0	0	17	10	0	0	19	15	0	0	15	10	0	0	17	5	0	0	21	8	0	0	18	11	merge_repeat	trfMask	chromOut	simple
chr10	64000333	A	C	999	11 11 11 11 11 11 11 11	20	0	0	11	22	0	0	10	20	0	0	9	14	0	0	24	9	0	0	13	9	0	0	9	17	0	0	11	11	0	0	12	8	merge_repeat	trfMask	chromOut	simple
chr10	64170937	C	T	999	11 11 11 11 11 11 11 11	28	0	0	16	32	0	0	11	25	0	0	16	26	0	0	11	33	0	0	11	17	0	0	18	29	0	0	14	27	0	0	7	34	merge_repeat		chromOut		nested
chr10	65797308	C	A	999	11 11 11 11 11 11 11 11	26	0	0	19	23	0	0	27	30	0	0	17	32	1	1	21	19	0	0	20	22	0	0	14	25	0	0	11	15	2	0	20	23	merge_repeat		chromOut
chr10	67374265	T	G	999	11 11 11 11 11 11 11 11	37	0	0	25	16	0	0	26	18	0	0	29	14	0	0	35	18	0	0	28	21	0	0	34	20	0	0	28	18	0	0	18	19
chr10	67379038	C	T	999	11 11 11 11 11 11 11 11	48	0	0	21	39	0	0	30	31	0	0	21	36	0	0	24	24	0	0	23	29	0	0	26	27	0	0	23	33	0	0	26	32
chr10	67423456	T	C	999	11 11 11 11 11 11 11 11	27	0	0	12	20	0	0	17	26	1	0	18	25	0	0	29	28	0	0	17	23	0	0	13	21	0	0	12	23	0	0	9	18	merge_repeat		chromOut
chr10	67431515	C	A	999	11 11 11 11 11 11 11 11	33	0	0	17	22	0	0	17	20	0	0	8	27	0	0	22	18	0	0	12	26	0	0	17	20	0	0	13	20	0	0	19	30
chr10	67440608	T	A,G	999	12 12 12 12 11 12 12 12	80	1	0	33	58	0	0	59	61	1	0	48	53	1	0	56	48	0	0	61	65	0	0	45	65	1	0	28	51	0	0	44	50	merge_repeat	trfMask	chromOut	simple	nested
chr10	67440644	C	T	999	11 11 11 11 11 11 11 11	68	0	0	32	46	0	0	53	50	0	0	49	48	0	0	53	42	0	0	58	52	0	0	42	54	0	0	26	42	0	0	42	44	merge_repeat	trfMask	chromOut	simple	nested
chr10	67443438	T	G	999	11 11 11 11 11 11 11 11	23	0	0	23	13	0	0	15	8	0	0	14	13	0	0	23	18	0	0	16	19	0	0	16	7	0	0	18	11	0	0	21	15	merge_repeat		chromOut		nested
chr10	67447809	A	G	999	11 11 11 11 11 11 11 11	27	0	0	14	19	0	0	18	26	0	0	13	31	0	0	18	25	0	0	14	28	0	0	13	22	0	0	10	21	0	0	18	9
chr10	67447889	A	G	999	11 11 11 11 11 11 11 11	39	0	0	30	15	0	0	41	25	0	0	27	23	0	0	40	20	0	0	27	15	0	0	32	21	0	0	24	15	0	0	34	13
chr10	67456755	C	T	999	11 11 11 11 11 11 11 11	28	0	0	11	17	0	0	19	27	0	0	25	25	0	0	20	23	0	0	19	29	0	0	15	17	0	0	14	23	0	0	23	13
chr10	67456777	T	A	999	11 11 11 11 11 11 11 11	43	0	0	20	23	0	0	27	34	0	0	34	34	0	0	31	31	0	0	28	33	0	0	27	22	0	0	20	30	0	0	32	17
chr10	67459125	A	C	999	11 11 11 11 11 11 11 11	44	0	0	32	12	0	0	27	26	0	0	40	19	0	0	40	25	0	0	39	25	0	0	45	27	0	0	45	17	0	0	32	20	merge_repeat		chromOut
chr10	69242755	A	G	999	11 11 11 11 11 11 11 11	23	0	0	30	15	0	0	15	24	0	0	21	14	0	0	41	16	0	0	37	14	0	0	18	11	0	0	23	13	0	0	15	8
chr10	69563690	T	C	999	11 11 11 11 11 11 11 11	35	0	0	31	30	0	0	23	12	0	0	37	16	0	0	41	22	0	0	31	23	0	0	30	17	0	0	48	25	0	0	29	17
chr10	69805199	G	A	999	11 11 11 11 11 11 11 11	47	0	0	27	28	0	0	18	29	0	0	31	25	0	0	39	28	0	0	32	29	0	0	29	23	0	0	26	24	0	0	18	32
chr10	69864344	A	T	999	11 11 11 11 11 11 11 11	26	0	0	8	22	0	0	13	22	0	0	14	19	0	0	10	16	0	0	11	23	0	0	14	18	0	0	11	23	0	0	8	23	merge_repeat	trfMask		simple	nested
chr10	69864354	A	G	999	11 11 11 11 11 11 11 11	30	0	0	14	20	0	0	13	21	0	0	14	20	0	0	11	19	0	0	10	21	0	0	14	18	0	0	11	23	0	0	12	25	merge_repeat	trfMask		simple	nested
chr10	69864365	G	A	999	11 11 11 11 11 11 11 11	29	0	0	15	22	0	0	16	19	0	0	11	19	0	0	11	18	0	0	12	18	0	0	14	15	0	1	11	19	0	0	11	25	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864397	G	A	999	11 11 11 11 11 11 11 11	36	0	0	19	20	0	0	28	20	0	0	17	20	0	0	23	24	0	0	16	20	0	0	21	18	0	1	13	23	0	0	14	29	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864403	G	A	999	11 11 11 11 11 11 11 11	34	0	0	16	19	0	0	24	20	0	0	16	18	0	0	22	22	0	0	16	20	0	0	21	18	0	0	14	23	0	0	14	27	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864427	A	G	999	11 11 11 11 11 11 11 11	36	0	0	25	17	0	0	39	21	0	0	21	17	0	0	28	23	0	0	21	15	0	0	24	14	0	0	20	23	0	0	22	21	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864466	A	G	999	11 11 11 11 11 11 11 11	38	0	0	28	16	0	0	43	21	0	0	27	11	0	0	34	28	0	0	28	14	0	0	25	22	0	0	23	23	0	0	30	20	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864490	G	A	999	11 11 11 11 11 11 11 11	35	0	0	28	16	0	0	43	15	0	0	28	10	0	0	35	27	0	0	23	12	0	0	26	24	0	0	20	22	0	0	30	20	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864498	C	A	999	11 11 11 11 11 11 11 11	35	0	0	25	16	0	0	42	15	0	0	28	11	0	0	34	27	0	0	23	12	0	0	25	24	0	0	21	23	0	0	29	21	merge_repeat	trfMask		simple	nested
chr10	69864503	G	A	999	11 11 11 11 11 11 11 11	25	0	0	20	11	0	0	32	12	0	0	22	10	0	0	25	26	0	0	15	10	0	0	13	21	0	0	18	18	0	0	26	18	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864504	G	A	999	11 11 11 11 11 11 11 11	25	0	0	20	11	0	0	30	12	0	0	22	10	0	0	25	26	0	0	15	10	0	0	14	21	0	0	18	18	0	0	26	18	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864515	G	A	999	11 11 11 11 11 11 11 11	28	0	0	22	13	0	0	32	9	0	0	24	15	0	0	29	20	0	0	19	9	0	0	13	21	0	0	18	17	0	0	28	16	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864523	G	A	999	11 11 11 11 11 11 11 11	27	0	0	22	11	0	0	30	9	0	0	24	13	0	0	28	18	0	1	19	7	0	0	13	18	0	1	17	12	0	0	27	16	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864524	T	C	999	11 11 11 11 11 11 11 11	27	0	0	22	13	0	0	31	9	0	0	24	15	0	0	28	20	0	0	19	8	0	0	13	20	0	0	17	16	0	0	27	17	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864525	G	T	999	11 11 11 11 11 11 11 11	29	0	0	22	13	0	0	31	9	0	0	24	15	0	0	28	20	0	1	19	9	0	0	13	21	0	0	17	16	0	0	27	17	merge_repeat	trfMask	chromOut	simple	nested
chr10	69864534	G	A	999	11 11 11 11 11 11 11 11	36	0	0	27	16	0	0	33	9	0	0	30	21	0	0	33	25	0	0	21	15	0	0	17	25	0	0	21	20	0	0	34	19	merge_repeat	trfMask	chromOut	simple	nested
chr10	70413171	G	T	999	11 11 11 11 11 11 11 11	39	0	0	20	32	0	0	19	30	0	0	15	30	0	0	17	24	0	0	21	29	0	0	23	21	0	0	19	21	0	0	12	27	merge_repeat		chromOut		nested
chr10	71141624	T	C	999	11 11 11 11 11 11 11 11	25	0	0	14	16	0	0	17	18	0	0	12	13	0	0	15	22	0	0	22	15	0	0	17	25	0	0	12	16	0	0	18	12	merge_repeat		chromOut
chr10	71149873	C	A	999	11 11 11 11 11 11 11 11	22	0	0	26	13	0	0	26	18	0	0	13	17	0	0	20	22	0	0	19	29	0	0	12	19	0	0	8	14	0	0	10	14	merge_repeat	trfMask		simple
chr10	71183811	T	C	999	11 11 11 11 11 11 11 11	24	0	0	11	13	0	0	15	16	0	0	12	21	0	0	23	22	0	0	18	19	0	0	16	17	0	0	15	20	0	0	16	21
chr10	71486059	T	A	999	11 11 11 11 11 11 11 11	22	0	0	19	16	0	0	21	15	0	0	18	14	0	0	18	9	0	0	14	13	0	0	19	12	0	0	15	7	0	0	13	11	merge_repeat		chromOut	simple	nested
chr10	72405683	G	T	999	11 11 11 11 11 11 11 11	43	1	0	23	31	0	0	24	37	0	0	33	29	0	0	42	30	0	0	25	27	0	0	23	29	0	0	29	33	0	0	23	20	merge_repeat				nested
chr10	72449019	A	C	999	11 11 11 11 11 11 11 11	48	0	0	26	22	0	0	30	41	0	0	27	30	0	0	33	35	0	0	33	25	0	0	37	35	0	0	41	35	0	0	25	32	merge_repeat		chromOut
chr10	73586006	T	C	999	11 11 11 11 11 11 11 11	30	0	0	18	15	0	0	21	20	0	0	19	15	0	0	23	18	0	0	29	12	0	0	20	15	0	0	18	18	0	0	19	11	merge_repeat		chromOut
chr10	73716596	C	A	999	11 11 11 11 11 11 11 11	21	0	0	17	7	0	0	16	10	0	0	15	6	0	0	24	5	0	0	25	3	0	0	14	8	0	0	22	5	0	0	28	6
chr10	74363526	G	A	999	11 11 11 11 11 11 11 11	57	0	0	37	29	0	0	31	30	0	0	36	35	0	0	38	30	0	0	27	30	0	0	26	32	0	0	26	37	0	0	33	31	merge_repeat		chromOut
chr10	74371734	A	T	999	11 11 11 11 11 11 11 11	31	0	0	12	19	0	0	19	12	0	0	26	12	0	0	22	10	0	0	25	21	0	0	12	20	0	0	21	15	0	0	19	14	merge_repeat	trfMask	chromOut	simple	nested
chr10	74600043	C	T	999	11 11 11 11 11 11 11 11	48	0	0	22	40	0	0	14	38	0	0	20	33	0	0	21	27	0	0	27	37	0	0	27	37	0	0	20	50	0	0	22	41
chr10	74600044	C	T	999	11 11 11 11 11 11 11 11	48	0	0	22	41	0	0	14	38	0	0	20	33	0	0	21	27	0	0	27	37	0	0	27	37	0	0	20	50	0	0	22	42
chr10	74789015	T	C	999	11 11 11 11 11 11 11 11	47	0	0	30	32	0	0	23	29	0	0	22	36	0	0	18	29	0	0	31	30	0	0	25	38	0	0	29	24	0	0	22	36
chr10	74852690	A	C	999	11 11 11 11 11 11 11 11	36	0	0	21	39	0	0	14	36	0	0	10	26	0	0	29	25	0	0	18	41	0	0	15	23	0	0	15	33	0	0	11	36
chr10	74951652	C	A	999	11 11 11 11 11 11 11 11	51	0	0	26	36	0	0	35	29	0	0	37	29	0	0	30	29	0	0	36	35	0	0	28	31	0	0	37	34	0	0	24	27	merge_repeat		chromOut
chr10	74979641	A	G	999	11 11 11 11 11 11 11 11	34	0	0	20	14	0	0	19	18	0	0	22	31	0	0	25	35	0	0	22	20	0	0	16	29	0	0	23	24	0	0	18	21
chr10	74979681	T	G	999	11 11 11 11 11 11 11 11	33	0	0	9	24	0	0	9	24	0	0	20	25	0	0	15	38	0	0	17	23	0	0	12	27	0	0	14	21	0	0	10	28
chr10	74995286	A	T	999	11 11 11 11 11 11 11 11	21	0	0	9	16	0	0	4	17	0	0	8	16	0	0	6	23	0	0	3	31	0	0	2	22	0	0	3	24	0	0	7	20	merge_repeat	trfMask	chromOut	simple
chr10	74995289	A	T	999	11 11 11 11 11 11 11 11	22	0	0	9	15	0	0	3	19	0	0	7	16	0	0	2	23	0	0	2	28	0	0	1	23	0	0	3	23	0	0	5	21	merge_repeat	trfMask	chromOut	simple
chr10	75016051	A	T	999	11 11 11 11 11 11 11 11	39	0	0	36	20	0	0	27	16	0	0	33	9	0	0	41	17	0	0	41	16	0	0	35	14	0	0	32	16	0	0	29	10	merge_repeat		chromOut
chr10	75235629	A	C	999	11 11 11 11 11 11 11 11	23	0	0	15	13	0	0	11	18	0	0	13	20	0	0	16	16	0	0	13	16	0	0	14	9	0	0	14	17	0	0	16	9	merge_repeat	trfMask	chromOut	simple
chr10	75235827	G	A	999	11 11 11 11 11 11 11 11	29	0	0	24	18	0	0	23	10	0	0	16	15	0	0	22	19	0	0	20	20	0	0	18	17	0	0	25	11	0	0	17	12	merge_repeat		chromOut
chr10	75474070	G	A	999	11 11 11 11 11 11 11 11	57	0	0	33	37	0	0	42	28	0	0	46	36	0	0	34	29	0	0	49	21	0	0	43	23	0	0	36	21	0	0	49	30	merge_repeat			simple
chr10	75474121	T	A	999	11 11 11 11 11 11 11 11	49	0	0	29	33	0	0	33	32	0	0	40	31	0	0	19	30	0	0	36	34	0	0	35	28	0	0	31	29	0	0	37	33	merge_repeat		chromOut
chr10	75474142	G	A	999	11 11 11 11 11 11 11 11	48	0	0	26	31	0	0	31	29	0	0	30	27	0	0	18	30	0	0	33	35	0	0	35	28	0	0	32	29	0	0	34	30
chr10	75475515	G	T	999	11 11 11 11 11 11 11 11	48	0	0	26	29	0	0	29	36	0	0	20	29	0	0	29	39	0	0	33	21	0	0	33	29	0	0	27	21	0	0	30	29
chr10	75560583	A	C	999	11 11 11 11 11 11 11 11	40	0	0	24	27	0	0	24	31	0	0	18	22	0	0	29	33	0	0	26	25	0	0	35	29	0	0	17	25	0	0	25	27
chr10	75560584	C	A	999	11 11 11 11 11 11 11 11	40	0	0	24	27	0	0	23	31	0	0	18	22	0	0	29	33	0	0	26	25	0	0	35	29	0	0	17	25	0	0	25	27
chr10	75626313	C	A	999	11 11 11 11 11 11 11 11	39	0	0	23	28	0	0	23	23	0	0	20	19	0	0	31	27	0	0	34	24	0	0	22	28	0	0	22	28	0	0	29	27	merge_repeat		chromOut		nested
chr10	75641238	G	C	999	11 11 11 11 11 11 11 11	52	0	0	33	24	0	0	27	29	0	0	29	45	0	0	25	27	0	0	18	35	0	0	28	29	0	0	22	40	0	0	27	39
chr10	75782997	T	C	999	11 11 11 11 11 11 11 11	23	0	0	14	13	0	0	9	14	0	0	5	22	0	0	4	29	0	0	12	26	0	0	6	18	0	0	18	30	0	0	14	27
chr10	75934961	A	G	999	11 11 11 11 11 11 11 11	20	0	0	4	28	0	0	4	16	0	0	6	19	0	0	8	22	0	0	5	28	0	0	3	20	0	0	7	22	0	0	9	13
chr10	75937468	T	C	999	11 11 11 11 11 11 11 11	34	0	0	16	21	0	0	11	23	0	0	20	24	0	0	21	30	0	0	24	28	0	0	14	27	0	0	24	25	0	0	12	28
chr10	76017703	A	C	999	11 11 11 11 11 11 11 11	29	0	0	13	19	0	0	7	26	0	0	15	36	0	0	16	25	0	0	16	26	0	0	8	28	0	0	8	25	0	0	6	23	merge_repeat	trfMask	chromOut	simple
chr10	76017715	A	C	999	11 11 11 11 11 11 11 11	27	0	0	12	17	0	0	8	23	0	0	14	32	0	0	15	24	0	0	15	26	0	0	8	26	0	0	8	22	0	0	6	21	merge_repeat	trfMask	chromOut	simple
chr10	76017719	A	C	999	11 11 11 11 11 11 11 11	27	0	0	13	17	0	0	9	23	0	0	14	33	0	0	14	24	0	0	15	26	0	0	7	26	0	0	7	22	0	0	6	21	merge_repeat	trfMask	chromOut	simple
chr10	76017723	A	C	999	11 11 11 11 11 11 11 11	28	0	0	13	18	0	0	9	23	0	0	14	33	0	0	15	24	0	0	15	26	0	0	7	26	0	0	7	22	0	0	7	21	merge_repeat	trfMask	chromOut	simple
chr10	76017740	A	C	999	11 11 11 11 11 11 11 11	28	0	0	13	16	0	0	6	23	0	0	14	34	0	0	12	26	0	0	10	24	0	0	9	27	0	0	7	21	0	0	9	20	merge_repeat	trfMask	chromOut	simple
chr10	76017753	A	T	999	11 11 11 11 11 11 11 11	25	0	0	11	14	0	0	7	20	0	0	14	31	0	0	10	24	0	0	10	23	0	0	7	24	0	0	7	21	0	0	8	19	merge_repeat	trfMask	chromOut	simple
chr10	76017757	A	T	999	11 11 11 11 11 11 11 11	26	0	0	11	15	0	0	7	21	0	0	15	32	0	0	10	24	0	0	10	23	0	0	7	24	0	0	7	21	0	0	9	19	merge_repeat	trfMask	chromOut	simple
chr10	76017763	G	T	999	11 11 11 11 11 11 11 11	27	0	0	12	15	0	0	9	19	0	0	17	32	0	0	12	25	0	0	9	22	0	0	7	23	0	0	7	22	0	0	10	19	merge_repeat		chromOut
chr10	76036647	C	A	999	11 11 11 11 11 11 11 11	50	0	0	27	42	0	0	26	28	0	0	27	32	0	0	26	38	0	0	28	34	0	0	23	27	0	0	29	34	0	0	27	33	merge_repeat		chromOut		nested
chr10	76036659	C	A	999	11 11 11 11 11 11 11 11	47	0	0	24	38	0	0	26	26	0	0	25	30	0	0	22	39	0	0	23	34	0	0	24	23	0	0	25	31	0	0	29	29	merge_repeat		chromOut		nested
chr10	76036665	C	A	999	11 11 11 11 11 11 11 11	50	0	0	24	37	0	0	29	26	0	0	25	30	0	0	23	38	0	0	23	34	0	0	24	26	0	0	26	33	0	0	29	26	merge_repeat		chromOut		nested
chr10	76036693	T	C	999	11 11 11 11 11 11 11 11	24	0	0	5	19	0	0	9	15	0	0	12	13	0	0	11	25	0	0	11	18	0	0	13	19	0	0	16	16	0	0	10	15	merge_repeat		chromOut		nested
chr10	76036697	G	T	999	11 11 11 11 11 11 11 11	23	0	0	5	19	0	0	9	14	0	0	12	13	0	0	11	25	0	0	11	18	0	0	13	19	0	0	16	16	0	0	10	15	merge_repeat		chromOut		nested
chr10	76036699	G	T	999	11 11 11 11 11 11 11 11	24	0	0	5	19	0	0	9	15	0	0	12	13	0	0	11	25	0	0	11	18	0	0	13	19	0	0	16	16	0	0	10	15	merge_repeat		chromOut		nested
chr10	76036702	T	C	999	11 11 11 11 11 11 11 11	24	0	0	5	19	0	0	9	15	0	0	12	13	0	0	11	25	0	0	11	17	0	0	13	19	0	0	16	16	0	0	10	15	merge_repeat		chromOut		nested
chr10	76036707	A	G	999	11 11 11 11 11 11 11 11	23	0	0	5	18	0	0	9	15	0	0	12	13	0	0	11	25	0	0	11	18	0	0	13	19	0	0	16	16	0	0	10	15	merge_repeat		chromOut		nested
chr10	76036732	C	A	999	11 11 11 11 11 11 11 11	34	0	0	11	25	0	0	13	21	0	0	14	20	0	0	18	41	0	0	18	22	0	0	16	29	0	0	23	26	0	0	14	22	merge_repeat		chromOut		nested
chr10	76036735	T	A	999	11 11 11 11 11 11 11 11	34	0	0	11	24	0	0	13	21	0	0	14	21	0	0	18	41	0	0	18	22	0	0	16	29	0	0	23	26	0	0	14	22	merge_repeat		chromOut		nested
chr10	76046514	C	A	999	11 11 11 11 11 11 11 11	22	0	0	16	14	0	0	14	8	0	1	15	17	0	0	14	18	0	0	18	10	0	0	21	12	0	0	21	19	0	0	23	6	merge_repeat		chromOut
chr10	76092024	A	T	999	11 11 11 11 11 11 11 11	37	0	0	19	27	0	0	19	31	0	0	15	25	0	0	21	20	0	0	18	32	0	0	9	28	0	0	17	39	0	0	18	31
chr10	76107691	C	A	999	11 11 11 11 11 11 11 11	44	0	0	24	34	0	0	32	30	0	0	24	30	0	0	34	29	0	0	33	41	0	0	16	28	0	0	28	37	0	0	23	24
chr10	76107740	T	C	999	11 11 11 11 11 11 11 11	42	0	0	26	42	0	0	28	38	0	0	16	30	0	0	35	34	0	0	33	43	0	0	13	29	0	0	21	40	0	0	20	31
chr10	76107754	A	G	999	11 11 11 11 11 11 11 11	44	0	0	27	42	0	0	25	41	0	0	18	28	0	0	35	35	0	0	28	42	0	0	17	27	0	0	22	39	0	0	22	32
chr10	76107841	G	A	999	11 11 11 11 11 11 11 11	57	0	0	43	30	0	0	36	47	0	0	30	27	0	0	37	28	0	0	26	31	0	0	30	33	0	0	32	41	0	0	38	28
chr10	76107870	T	C	999	11 11 11 11 11 11 11 11	49	0	0	47	30	0	0	31	38	0	0	34	25	0	0	34	32	0	0	25	24	0	0	34	28	0	0	30	36	0	0	40	30
chr10	76148732	A	C	999	11 11 11 11 11 11 11 11	22	0	0	10	12	0	0	15	12	0	0	19	17	0	0	19	13	0	0	17	17	0	0	12	14	0	0	14	15	0	0	13	13
chr10	76148735	A	T	999	11 11 11 11 11 11 11 11	23	0	0	11	12	0	0	15	12	0	0	19	18	0	0	20	13	0	0	17	16	0	0	12	13	0	0	15	15	0	0	13	12
chr10	76148748	G	T	999	11 11 11 11 11 11 11 11	28	0	0	16	13	0	0	18	12	0	0	20	15	0	0	25	14	0	0	20	20	0	0	17	11	0	0	20	17	0	0	16	15
chr10	76148785	G	A	999	11 11 11 11 11 11 11 11	32	0	0	26	11	0	0	27	10	0	0	23	16	0	0	26	13	0	0	22	14	0	0	20	12	0	0	28	15	0	0	22	15
chr10	76148792	T	C	999	11 11 11 11 11 11 11 11	34	0	0	27	13	0	0	27	11	0	0	23	16	0	0	28	15	0	0	23	15	0	0	22	12	0	0	31	16	0	0	21	14
chr10	76159580	A	C	999	11 11 11 11 11 11 11 11	32	0	0	18	14	0	0	17	15	0	0	17	24	0	0	22	23	0	0	25	29	0	0	26	12	0	0	27	21	0	0	16	22	merge_repeat	trfMask	chromOut	simple	nested
chr10	76216791	T	C	999	11 11 11 11 11 11 11 11	39	0	0	24	15	0	0	34	25	0	0	31	21	0	0	31	32	0	0	28	32	0	0	30	22	0	0	26	16	0	0	26	25
chr10	76216801	C	T	999	11 11 11 11 11 11 11 11	39	0	0	21	18	0	0	25	28	0	0	31	20	0	0	31	32	0	0	26	36	0	0	30	23	0	0	22	21	0	0	21	29
chr10	76216823	T	G	999	11 11 11 11 11 11 11 11	37	0	0	20	17	0	0	22	28	0	0	29	20	0	0	21	30	0	0	25	31	0	0	27	22	0	0	24	24	0	0	17	24
chr10	76944871	A	G	999	11 11 11 11 11 11 11 11	24	0	0	18	12	0	0	6	18	0	0	16	19	0	0	22	25	0	0	12	22	0	0	18	19	0	0	13	15	0	0	11	16	merge_repeat		chromOut		nested
chr10	77059925	G	T	999	11 11 11 11 11 11 11 11	40	0	0	15	28	0	0	19	28	0	0	25	23	0	0	27	27	0	0	22	18	0	0	22	30	0	0	24	31	0	0	25	20
chr10	77212264	A	T	999	11 11 11 11 11 11 11 11	36	0	0	21	34	0	0	29	22	0	0	26	32	0	0	16	26	0	0	28	32	0	0	14	22	0	0	21	30	0	0	23	25
chr10	77328407	T	C	999	11 11 11 11 11 11 11 11	23	0	0	16	11	0	0	15	18	0	0	14	13	0	0	13	18	0	0	11	21	0	0	11	13	0	0	17	21	0	0	13	10	merge_repeat	trfMask	chromOut	simple	nested
chr10	78076986	T	C	999	11 11 11 11 11 11 11 11	40	0	0	29	22	0	0	20	30	0	0	38	28	0	0	27	26	0	0	24	37	0	0	26	14	0	0	24	31	0	0	25	32
chr10	79474122	A	T	999	11 11 11 11 11 11 11 11	35	0	0	29	22	0	0	25	22	0	0	25	25	0	0	21	20	0	0	12	26	0	0	9	26	0	0	26	31	0	0	18	19	merge_repeat		chromOut
chr10	79591137	A	C	999	11 11 11 11 11 11 11 11	28	0	0	15	13	0	0	18	28	0	0	10	22	0	0	12	29	0	0	16	33	0	0	13	15	0	0	7	22	0	0	10	19	merge_repeat		chromOut		nested
chr10	79933516	G	T	999	11 11 11 11 11 11 11 11	47	0	0	26	21	0	0	28	21	0	0	36	37	0	0	39	28	0	0	53	32	0	0	24	25	0	0	30	27	0	0	37	30
chr10	80044613	T	C	999	11 11 11 11 11 11 11 11	26	0	0	17	19	0	0	9	17	0	0	12	19	0	0	22	22	0	0	24	26	0	0	8	22	0	0	17	18	0	0	18	13	merge_repeat		chromOut
chr10	82870193	T	C	999	11 11 11 11 11 11 11 11	52	0	0	30	35	0	0	22	30	0	0	27	33	0	0	25	39	0	0	28	32	0	0	17	39	0	0	16	36	0	0	25	30
chr10	83578288	C	T	999	11 11 11 11 11 11 11 11	42	1	0	31	11	0	0	36	25	0	0	33	20	0	1	45	23	0	0	39	22	0	0	37	22	0	0	27	15	0	0	41	17	merge_repeat	trfMask	chromOut	simple
chr10	83731388	C	G	999	11 11 11 11 11 11 11 11	23	0	0	9	14	0	0	9	16	0	0	8	21	0	0	10	20	0	0	10	21	0	0	8	16	0	0	7	21	0	0	8	20
chr10	83731479	T	A	999	11 11 11 11 11 11 11 11	38	0	0	23	27	0	0	34	25	0	0	20	33	0	0	31	26	0	0	36	34	0	0	18	20	0	0	29	31	0	0	23	33
chr10	83731994	G	C	999	11 11 11 11 11 11 11 11	43	0	0	35	18	0	0	28	18	0	0	29	14	0	0	37	31	0	0	27	33	0	0	31	26	0	0	26	27	0	0	35	26
chr10	83733026	T	G	999	11 11 11 11 11 11 11 11	44	0	0	21	39	0	0	24	28	0	0	26	31	0	0	23	35	0	0	28	37	0	0	26	37	0	0	14	30	0	0	23	38	merge_repeat		chromOut
chr10	83733523	A	G	999	11 11 11 11 11 11 11 11	53	0	0	23	30	0	0	22	42	0	0	26	39	0	0	36	41	0	0	24	38	0	0	21	35	0	0	26	42	0	0	24	40
chr10	84889954	C	G	999	11 11 11 11 11 11 11 11	52	0	0	35	26	0	0	25	28	0	0	29	29	0	0	33	28	0	0	34	32	0	0	36	21	0	0	26	26	0	0	34	26
chr10	85566006	C	T	999	11 11 11 11 11 11 11 11	52	0	0	37	22	0	0	29	23	0	0	34	35	0	0	35	43	0	0	43	32	0	0	22	33	0	0	43	25	0	0	38	32	merge_repeat		chromOut		nested
chr10	85729615	T	C	999	11 11 11 11 11 11 11 11	42	0	0	23	24	0	0	27	25	0	0	18	24	0	0	34	22	0	0	26	24	0	0	29	31	0	0	36	27	0	0	19	34	merge_repeat					segmentDup
chr10	87058837	T	C	999	11 11 11 11 11 11 11 11	25	0	0	16	11	0	0	10	15	0	0	14	22	0	0	17	19	0	0	22	20	0	0	11	15	0	0	24	19	0	0	19	16
chr10	90138061	C	A	999	11 11 11 11 11 11 11 11	50	0	0	26	32	0	0	24	34	0	0	19	31	0	0	22	28	0	0	19	32	0	0	26	32	0	0	18	39	0	0	18	33
chr10	90138346	T	C	999	11 11 11 11 11 11 11 11	30	0	0	12	25	0	0	23	28	0	0	11	23	0	0	21	27	0	0	20	23	0	0	18	22	0	0	14	17	0	0	10	20
chr10	90832703	G	A	999	11 11 11 11 11 11 11 11	45	0	0	38	38	0	0	23	22	0	0	36	34	0	0	33	37	0	0	33	29	0	0	27	34	0	0	33	33	0	0	38	27
chr10	91547182	G	A	999	11 11 11 11 11 11 11 11	38	0	0	18	25	0	0	11	27	0	0	24	21	0	0	22	34	0	0	21	27	0	0	15	36	0	0	16	23	0	0	18	21	merge_repeat		chromOut
chr10	92798225	T	C	999	11 11 11 11 11 11 11 11	58	0	0	30	28	0	0	34	30	0	0	31	34	0	0	29	30	0	0	45	26	0	0	41	28	0	0	34	27	0	0	39	27	merge_repeat		chromOut
chr10	93725338	A	G	999	11 11 11 11 11 11 11 11	36	0	0	23	19	0	1	22	31	0	0	25	28	0	0	19	17	0	0	27	28	0	0	26	27	0	0	19	27	0	0	20	30	merge_repeat	trfMask	chromOut	simple
chr10	93725346	A	G	999	11 11 11 11 11 11 11 11	39	0	0	23	19	0	0	18	30	0	0	23	31	0	0	22	17	0	0	25	29	0	0	24	28	0	0	19	31	0	0	19	29	merge_repeat	trfMask	chromOut	simple
chr10	93896210	T	G	999	11 11 11 11 11 11 11 11	34	0	0	28	22	0	0	23	30	0	0	22	25	0	0	28	23	0	0	23	22	0	0	32	28	0	0	16	18	0	0	20	26	merge_repeat		chromOut	simple
chr10	96569943	T	C	999	11 11 11 11 11 11 11 11	41	0	0	20	21	0	0	29	31	0	0	24	33	0	0	27	36	0	1	29	27	0	0	25	29	0	0	24	34	0	0	29	24
chr10	98692532	A	G	999	11 11 11 11 11 11 11 11	23	0	0	15	8	0	0	10	19	0	0	13	15	0	0	22	16	0	0	19	24	0	0	9	21	0	0	17	16	0	0	11	13
chr10	98735139	C	T	999	11 11 11 11 11 11 11 11	47	0	0	30	17	0	0	31	17	0	0	41	15	0	0	42	28	0	0	50	32	0	0	37	25	0	0	31	34	0	0	35	25	merge_repeat		chromOut	simple
chr10	98735190	G	T	999	11 11 11 11 11 11 11 11	39	0	0	17	22	0	0	28	21	0	0	27	20	0	0	28	29	0	0	32	34	0	0	28	20	0	0	28	35	0	0	21	22	merge_repeat		chromOut
chr10	99043288	C	T	999	11 11 11 11 11 11 11 11	35	1	0	10	24	0	0	12	29	0	0	15	21	1	0	10	43	1	0	14	31	0	0	21	28	1	0	16	31	2	0	14	31	merge_repeat	trfMask		simple
chr10	99043294	A	C	999	11 11 11 11 11 11 11 11	36	1	0	12	23	0	0	13	28	0	0	20	21	0	0	14	43	1	0	15	30	0	0	24	28	0	0	17	30	1	0	13	28	merge_repeat	trfMask		simple
chr10	99043297	C	T	999	11 11 11 11 11 11 11 11	36	0	0	13	23	0	0	12	28	0	0	16	20	1	0	12	43	0	0	14	30	0	0	23	28	0	0	17	30	1	0	13	29	merge_repeat	trfMask		simple
chr10	99043337	C	T	999	11 11 11 11 11 11 11 11	24	0	0	9	18	0	0	16	18	0	0	9	20	0	0	10	27	0	0	13	11	0	0	17	22	0	0	19	20	1	0	14	19	merge_repeat	trfMask	chromOut	simple
chr10	99043345	C	T	999	11 11 11 11 11 11 11 11	22	0	0	8	18	0	0	17	17	0	0	9	19	0	0	9	28	0	0	11	11	0	0	13	22	0	0	18	19	0	0	13	18	merge_repeat	trfMask	chromOut	simple
chr10	99043347	C	T	999	11 11 11 11 11 11 11 11	22	0	0	7	18	0	0	16	17	0	0	10	20	0	0	9	28	0	0	11	11	0	0	13	22	0	0	17	19	0	0	13	17	merge_repeat	trfMask	chromOut	simple
chr10	99043353	C	T	999	11 11 11 11 11 11 11 11	22	0	0	8	18	0	0	15	17	0	0	10	21	0	0	8	28	0	0	10	12	0	0	14	22	0	0	17	19	1	0	13	18	merge_repeat	trfMask	chromOut	simple
chr10	99043354	C	T	999	11 11 11 11 11 11 11 11	23	0	0	7	18	0	0	17	19	0	0	10	21	0	0	6	27	0	0	11	12	0	0	13	22	0	0	17	19	1	0	12	18	merge_repeat	trfMask	chromOut	simple
chr10	99043363	C	T	999	11 11 11 11 11 11 11 11	27	0	0	11	23	0	0	21	22	0	0	16	23	0	0	15	31	0	0	13	14	0	1	28	26	0	1	26	20	0	0	16	21	merge_repeat	trfMask	chromOut	simple
chr10	99043385	C	T	999	11 11 11 11 11 11 11 11	31	0	0	11	20	0	0	18	20	0	0	14	21	0	0	12	21	0	0	14	17	0	0	28	21	0	0	32	20	0	0	14	23	merge_repeat	trfMask	chromOut	simple
chr10	99043387	C	T	999	11 11 11 11 11 11 11 11	31	0	0	11	20	0	0	17	19	0	0	14	21	0	0	12	21	0	0	14	17	0	0	28	21	0	0	32	20	0	0	14	23	merge_repeat	trfMask	chromOut	simple
chr10	99043388	A	T	999	11 11 11 11 11 11 11 11	30	0	0	11	20	0	0	17	19	0	0	14	21	0	0	11	21	0	0	13	17	0	0	28	21	0	0	32	20	1	0	13	23	merge_repeat	trfMask	chromOut	simple
chr10	99043399	C	T	999	11 11 11 11 11 11 11 11	36	0	0	12	25	0	0	21	24	0	0	16	21	0	0	17	25	0	0	15	21	0	0	30	27	0	0	32	21	0	0	18	27	merge_repeat	trfMask	chromOut	simple
chr10	99043404	C	T	999	11 11 11 11 11 11 11 11	36	0	0	12	24	0	0	22	21	0	0	19	22	0	0	16	22	0	0	15	22	0	0	30	27	0	0	30	23	0	0	21	25	merge_repeat	trfMask	chromOut	simple
chr10	99043414	C	T	999	11 11 11 11 11 11 11 11	36	0	0	13	25	0	0	24	22	0	0	20	21	0	0	21	23	0	0	15	21	0	0	28	26	0	0	30	23	0	0	21	24	merge_repeat	trfMask	chromOut	simple
chr10	100800951	A	C	999	11 11 11 11 11 11 11 11	23	0	0	4	32	0	0	2	25	0	0	2	21	0	0	7	30	0	0	7	28	0	0	2	33	0	0	7	21	0	0	7	20	merge_repeat	trfMask	chromOut	simple
chr10	100886284	C	T	999	11 11 11 11 11 11 11 11	48	0	0	18	37	0	0	20	39	0	0	29	34	0	0	16	34	0	0	21	29	0	0	20	45	0	0	33	26	0	0	14	34	merge_repeat		chromOut		nested
chr10	102184054	T	C	999	11 11 11 11 11 11 11 11	20	0	0	16	5	0	0	14	6	0	0	28	7	0	0	17	6	0	0	23	8	0	0	18	4	0	0	22	3	0	0	23	3	merge_repeat	trfMask	chromOut	simple	nested
chr10	106259366	T	A	999	11 11 11 11 11 11 11 11	33	0	0	12	21	0	0	18	19	0	0	14	25	0	0	19	29	0	0	18	30	0	0	21	12	0	0	13	22	0	0	13	27	merge_repeat	trfMask	chromOut	simple	nested
chr10	107431202	T	C	999	11 11 11 11 11 11 11 11	59	0	0	49	36	0	0	42	36	0	0	36	28	0	0	37	36	0	0	44	39	0	0	39	33	0	0	42	35	0	0	40	19	merge_repeat		chromOut		nested
chr10	109658047	A	G	999	11 11 11 11 11 11 11 11	21	0	0	12	11	0	0	21	14	0	0	22	18	0	0	18	12	0	0	28	7	0	0	16	16	0	0	21	11	0	0	8	13	merge_repeat		chromOut
chr10	110959282	A	G	999	11 11 11 11 11 11 11 11	74	0	0	43	38	0	0	54	48	0	0	53	30	0	0	39	35	0	0	49	30	0	0	49	34	0	0	42	36	0	0	45	35	merge_repeat			simple
chr10	111533246	G	A	999	11 11 11 11 11 11 11 11	48	0	0	23	27	0	0	18	30	0	0	27	31	0	0	20	29	0	0	33	41	0	0	30	27	0	0	27	40	0	0	30	20
chr10	111639564	A	C	999	11 11 11 11 11 11 11 11	41	0	0	33	24	0	0	37	28	0	0	33	27	0	0	39	27	0	0	38	21	0	0	30	20	0	0	27	14	0	0	38	25
chr10	111686757	A	G	999	11 11 11 11 11 11 11 11	50	0	0	24	27	0	0	28	34	0	0	24	29	0	0	25	29	0	0	28	34	0	0	30	41	0	0	28	22	0	0	25	28
chr10	112668646	G	A	999	11 11 11 11 11 11 11 11	45	0	0	39	17	0	0	37	21	0	0	42	17	0	0	28	17	0	0	29	19	0	0	27	20	0	0	34	17	0	0	33	16	merge_repeat		chromOut	simple
chr10	112821762	A	C	999	11 11 11 11 11 11 11 11	22	0	0	15	13	0	0	10	18	0	0	19	17	0	0	19	25	0	0	17	23	0	0	9	13	0	0	19	21	0	0	11	12	merge_repeat	trfMask	chromOut	simple
chr10	114060057	T	C	999	11 11 11 11 11 11 11 11	21	0	0	25	8	0	0	15	6	0	0	25	4	0	0	25	8	0	0	23	4	0	0	20	2	0	0	25	7	0	0	32	4	merge_repeat		chromOut		nested
chr10	114060115	T	C	999	11 11 11 11 11 11 11 11	23	0	0	30	10	0	0	16	7	0	0	21	6	0	0	28	14	0	0	22	11	0	0	19	9	0	0	32	7	0	0	23	4	merge_repeat		chromOut		nested
chr10	114060120	T	C	999	11 11 11 11 11 11 11 11	25	0	0	28	11	0	0	18	7	0	0	20	6	0	0	28	16	0	0	21	13	0	0	19	9	0	0	33	7	0	0	25	5	merge_repeat		chromOut		nested
chr10	114368607	G	C	999	11 11 11 11 11 11 11 11	34	0	0	19	27	0	2	17	29	0	0	21	22	1	0	26	34	1	0	23	24	0	0	17	34	0	0	17	27	1	0	12	21	merge_repeat	trfMask	chromOut	simple	nested
chr10	114948677	G	C	999	11 11 11 11 11 11 11 11	49	0	0	28	29	0	0	27	36	0	0	28	33	0	0	27	22	0	0	34	23	0	0	29	30	0	0	30	30	0	0	23	27	merge_repeat		chromOut
chr10	115109932	T	C	999	11 11 11 11 11 11 11 11	52	0	0	35	17	0	0	44	22	0	0	41	30	0	0	38	26	0	0	36	33	0	0	36	27	0	1	32	33	0	0	40	16	merge_repeat	trfMask	chromOut	simple
chr10	116891039	G	T	999	11 11 11 11 11 11 11 11	23	1	0	15	17	0	0	10	13	0	0	15	9	0	0	14	22	0	0	13	16	0	0	3	21	0	0	11	12	0	0	6	17
chr10	117582797	T	C	999	11 11 11 11 11 11 11 11	40	0	0	19	23	0	0	23	37	0	0	16	29	0	0	25	23	0	0	19	21	0	0	21	20	0	0	20	25	0	0	26	20	merge_repeat		chromOut	simple
chr10	117582813	C	T	999	11 11 11 11 11 11 11 11	40	0	0	19	21	0	0	25	27	0	0	19	21	0	0	32	22	0	0	29	17	0	0	24	16	0	0	23	20	0	0	27	16	merge_repeat		chromOut	simple
chr10	117582830	T	C	999	11 11 11 11 11 11 11 11	44	0	0	22	22	0	0	29	29	0	0	21	23	0	0	33	28	0	0	28	16	0	0	26	22	0	0	25	19	0	0	34	24	merge_repeat		chromOut	simple
chr10	117582834	T	C	999	11 11 11 11 11 11 11 11	43	0	0	22	23	0	0	27	29	0	0	20	23	0	0	33	28	0	0	27	17	0	0	26	22	0	0	25	20	0	0	34	23	merge_repeat		chromOut	simple
chr10	117582876	C	T	999	11 11 11 11 11 11 11 11	40	0	0	26	14	1	0	26	25	0	0	26	18	0	0	24	21	0	0	30	20	0	0	29	20	0	0	22	21	0	0	27	22	merge_repeat		chromOut	simple
chr10	118000321	T	C	999	11 11 11 11 11 11 11 11	44	0	0	22	43	0	0	14	33	0	0	20	30	0	0	24	26	0	0	20	43	0	0	35	34	0	0	15	29	0	0	17	29
chr10	118948373	T	G	999	11 11 11 11 11 11 11 11	61	0	0	30	35	0	0	29	32	0	0	30	37	0	0	25	36	0	0	30	39	0	0	47	41	0	0	24	48	0	0	30	33	merge_repeat	trfMask		simple	nested
chr10	118948404	A	T	999	11 11 11 11 11 11 11 11	57	0	0	28	33	0	0	28	29	0	0	32	38	0	0	23	42	0	0	30	38	0	0	36	42	0	0	24	50	0	0	29	41	merge_repeat	trfMask	chromOut	simple	nested
chr10	118948411	C	T	999	11 11 11 11 11 11 11 11	60	0	0	33	39	0	0	31	29	0	0	34	39	0	0	26	44	0	0	34	40	0	0	40	44	0	0	25	52	0	0	31	42	merge_repeat	trfMask	chromOut	simple	nested
chr10	118948431	C	T	999	11 11 11 11 11 11 11 11	63	0	0	30	41	0	0	34	29	0	2	33	41	0	0	26	47	0	0	42	42	0	0	39	43	0	0	24	49	0	0	28	41	merge_repeat	trfMask	chromOut	simple	nested
chr10	119038807	T	C	999	11 11 11 11 11 11 11 11	57	0	0	32	35	0	0	25	37	0	0	33	32	0	0	33	28	0	0	26	31	0	0	33	30	0	0	27	38	0	0	29	31	merge_repeat		chromOut
chr10	119079888	G	T	999	11 11 11 11 11 11 11 11	20	0	0	18	6	0	0	12	8	0	0	19	14	0	0	27	22	0	0	22	26	0	0	16	8	0	0	23	13	0	0	9	14
chr10	120214127	G	T	999	11 11 11 11 11 11 11 11	30	1	0	21	12	0	0	17	22	1	0	16	13	1	0	16	22	0	1	15	15	1	0	23	20	0	1	12	20	0	0	16	16	merge_repeat	trfMask	chromOut	simple
chr10	120571333	C	T	999	11 11 11 11 11 11 11 11	22	0	0	23	2	0	0	18	6	0	0	14	8	0	0	34	17	0	0	21	4	0	0	22	11	0	0	23	8	0	0	20	5
chr10	120571334	T	C	999	11 11 11 11 11 11 11 11	22	0	0	23	2	1	0	18	6	0	0	14	8	0	0	34	17	0	0	21	4	1	0	22	11	0	0	23	8	0	0	20	5
chr10	120571337	C	T	999	11 11 11 11 11 11 11 11	21	0	0	23	2	1	0	18	6	0	0	14	7	0	0	34	17	0	0	21	5	1	0	22	11	0	0	23	7	0	0	20	5
chr10	120571395	C	G	999	11 11 11 11 11 11 11 11	20	0	0	16	4	0	0	20	6	0	0	21	11	0	0	27	23	0	0	22	8	0	0	25	12	0	0	23	13	0	0	25	9
chr10	120832876	A	G	999	11 11 11 11 11 11 11 11	42	1	0	30	20	0	0	30	17	0	0	31	19	1	0	22	21	0	0	23	20	0	0	29	16	0	0	29	26	1	0	25	16	merge_repeat	trfMask	chromOut	simple
chr10	120949764	T	C	999	11 11 11 11 11 11 11 11	56	0	0	22	49	0	0	26	32	0	0	33	30	0	0	18	41	0	0	34	38	0	0	38	30	0	0	25	31	0	0	27	37
chr10	121659511	G	C	999	11 11 11 11 11 11 11 11	45	0	0	24	33	0	0	20	34	0	0	14	31	0	0	24	40	0	0	23	31	0	0	21	29	0	0	25	31	0	0	24	40	merge_repeat		chromOut		nested
chr10	121993910	T	A	999	11 11 11 11 11 11 11 11	37	0	0	22	15	0	0	19	28	0	0	22	24	0	0	47	30	0	0	24	17	0	0	24	18	0	0	24	26	0	0	28	30
chr10	122214281	T	G	999	11 11 11 11 11 11 11 11	56	0	0	26	33	0	0	31	25	0	0	42	38	0	0	34	39	0	0	32	32	0	0	27	31	0	0	33	39	0	0	24	33	merge_repeat		chromOut		nested
chr10	122830166	T	A	999	11 11 11 11 11 11 11 11	20	0	0	9	11	0	0	15	18	0	0	8	15	0	0	20	14	0	0	16	20	0	0	17	17	0	0	17	9	0	0	13	16	merge_repeat		chromOut	simple
chr10	123827602	C	A	999	11 11 11 11 11 11 11 11	58	0	0	36	23	0	0	42	46	0	0	29	32	0	0	43	33	0	0	39	28	0	0	38	30	0	0	24	45	0	0	34	24	merge_repeat		chromOut
chr10	125187292	T	C	999	11 11 11 11 11 11 11 11	64	0	0	44	31	0	0	36	29	0	0	42	22	0	0	48	22	0	0	37	27	0	0	55	41	0	0	55	33	0	0	45	23
chr10	125544375	A	G	999	11 11 11 11 11 11 11 11	28	0	0	9	19	0	0	16	22	0	0	7	27	0	0	15	26	0	0	16	27	0	0	17	32	0	0	15	15	0	0	11	23	merge_repeat		chromOut
chr10	125544495	A	G	999	11 11 11 11 11 11 11 11	46	0	0	32	27	0	0	32	28	0	0	32	27	0	0	29	35	0	0	27	25	0	0	34	25	0	0	24	22	0	0	26	25	merge_repeat		chromOut
chr10	125544504	A	G	999	11 11 11 11 11 11 11 11	45	0	0	33	29	0	0	30	28	0	0	35	26	0	0	31	33	0	0	24	29	0	0	33	25	0	0	22	23	0	0	27	24	merge_repeat		chromOut
chr10	127337905	C	A	999	11 11 11 11 11 11 11 11	48	0	0	20	28	0	0	30	23	0	0	32	24	0	0	35	28	0	0	40	31	0	0	42	23	0	0	29	19	0	0	47	18
chr10	127345094	A	C	999	11 11 11 11 11 11 11 11	53	0	0	20	33	0	0	27	32	0	0	36	34	0	0	13	43	0	0	33	34	0	0	21	33	0	0	31	30	0	0	21	43	merge_repeat		chromOut		nested
chr10	127908128	G	A	999	11 11 11 11 11 11 11 11	37	1	0	32	14	0	0	36	14	0	0	30	18	0	0	32	17	0	0	28	23	0	0	24	19	1	0	19	17	0	0	33	20	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908146	G	A	999	11 11 11 11 11 11 11 11	43	0	0	33	14	0	0	40	17	0	0	36	21	0	0	33	20	0	0	29	26	0	0	28	20	1	0	22	20	0	0	34	22	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908168	G	A	999	11 11 11 11 11 11 11 11	48	1	1	36	16	1	0	45	17	0	0	40	23	1	0	44	19	0	2	32	24	0	1	33	23	1	0	27	20	0	0	42	21	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908184	G	A	999	11 11 11 11 11 11 11 11	49	1	0	35	21	0	0	44	15	0	0	41	29	0	0	43	17	0	0	27	26	0	1	31	22	0	0	27	22	0	0	41	19	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908203	G	A	999	11 11 11 11 11 11 11 11	47	0	0	24	23	1	0	40	15	0	0	43	29	0	0	41	21	0	0	22	31	0	1	26	27	0	0	25	26	0	0	38	27	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908207	G	A	999	11 11 11 11 11 11 11 11	44	0	0	20	24	0	0	35	16	0	0	44	28	0	0	38	22	0	0	22	31	0	1	23	29	0	0	25	25	0	0	33	27	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908225	G	A	999	11 11 11 11 11 11 11 11	50	0	0	26	25	1	0	36	13	0	0	36	25	0	0	39	26	0	0	24	33	1	0	28	30	0	0	24	30	0	0	30	26	merge_repeat	trfMask	chromOut	simple	nested
chr10	127908242	T	C	999	11 11 11 11 11 11 11 11	49	0	1	31	23	0	0	35	14	0	0	37	32	0	0	39	25	0	0	21	32	1	0	29	26	1	0	26	29	0	0	22	27	merge_repeat	trfMask	chromOut	simple
chr10	127908243	G	A	999	11 11 11 11 11 11 11 11	47	0	1	29	23	0	0	33	14	0	0	37	34	0	1	38	24	0	0	21	32	1	0	30	27	1	0	26	30	0	0	22	26	merge_repeat	trfMask	chromOut	simple
chr10	127908251	G	A	999	11 11 11 11 11 11 11 11	52	0	1	32	24	1	0	35	17	0	0	36	34	0	1	38	26	0	0	21	32	1	0	31	27	1	0	26	30	0	0	22	30	merge_repeat	trfMask	chromOut	simple
chr10	130574520	T	A	999	11 11 11 11 11 11 11 11	24	0	0	24	10	0	0	27	19	0	0	18	8	0	0	28	7	0	0	26	5	0	0	20	4	0	0	19	8	0	0	20	7	merge_repeat		chromOut	simple	nested
chr10	130574586	C	A	999	11 11 11 11 11 11 11 11	33	0	0	27	11	0	0	35	25	0	0	28	5	0	0	39	7	0	0	36	7	0	0	43	2	0	0	32	6	0	0	29	8	merge_repeat		chromOut	simple	nested
chr10	130574605	A	C	999	11 11 11 11 11 11 11 11	35	0	0	27	14	0	0	37	24	0	0	29	6	1	0	47	7	0	0	37	5	0	0	48	5	0	0	33	7	0	0	31	12	merge_repeat		chromOut	simple	nested
chr10	130574623	A	T	999	11 11 11 11 11 11 11 11	40	0	0	34	14	0	0	38	22	0	0	34	6	0	0	47	10	0	0	38	6	0	0	48	4	0	0	32	9	0	0	33	12	merge_repeat		chromOut	simple	nested
chr10	130574675	G	C	999	11 11 11 11 11 11 11 11	45	0	0	34	13	0	0	25	20	0	0	36	9	0	0	46	17	0	0	35	14	0	0	42	14	0	0	43	6	0	0	32	18	merge_repeat		chromOut	simple	nested
chr10	130574800	G	A	999	11 11 11 11 11 11 11 11	56	0	0	28	28	0	0	37	22	0	0	35	34	0	0	33	34	0	0	32	28	0	0	43	27	0	0	46	23	0	0	36	24	merge_repeat		chromOut	simple	nested
chr10	130574940	G	A	999	11 11 11 11 11 11 11 11	54	0	0	28	26	0	0	35	32	0	0	30	29	0	0	36	42	0	0	28	33	0	0	28	39	0	0	35	37	0	0	25	30	merge_repeat		chromOut	simple	nested
chr10	130574986	G	A	999	11 11 11 11 11 11 11 11	32	0	0	16	16	0	0	26	19	0	0	14	20	0	0	23	31	0	0	13	20	0	0	16	16	0	0	23	25	0	0	17	19	merge_repeat		chromOut	simple	nested