chr	position	ref	alt	quality	samtools_GT_RAW	min_depth	1RF	1RR	1AF	1AR	2RF	2RR	2AF	2AR	3RF	3RR	3AF	3AR	4RF	4RR	4AF	4AR	5RF	5RR	5AF	5AR	6RF	6RR	6AF	6AR	7RF	7RR	7AF	7AR	8RF	8RR	8AF	8AR	merge_repeat	trfMask	chromOut	simple	nested	segmentDup
chr1	3000287	A	G	999	11 11 11 11 11 11 11 11	25	0	0	27	11	0	0	36	3	0	0	25	8	0	0	28	13	0	0	28	10	0	0	22	9	0	0	21	4	0	0	25	5	merge_repeat		chromOut
chr1	3000325	G	T	999	11 11 11 11 11 11 11 11	27	0	0	32	13	0	0	35	8	0	0	30	13	0	0	35	14	0	0	35	13	0	0	30	12	0	0	19	8	0	0	31	14	merge_repeat		chromOut
chr1	3000441	T	G	999	11 11 11 11 11 11 11 11	46	0	0	30	16	0	0	31	21	0	0	36	20	0	0	32	29	1	0	42	18	0	0	33	20	0	0	29	22	0	0	33	31	merge_repeat		chromOut
chr1	4590408	A	T	999	11 11 11 11 11 11 11 11	22	0	0	3	23	0	0	7	26	0	0	3	19	0	0	6	28	0	0	7	27	0	0	4	20	0	0	4	20	0	0	6	17	merge_repeat		chromOut		nested
chr1	5377368	C	T	999	11 11 11 11 11 11 11 11	31	0	0	15	19	1	0	12	19	0	0	18	24	0	0	11	26	0	0	18	16	0	0	11	20	0	1	21	26	0	0	19	24	merge_repeat		chromOut
chr1	5377581	G	A	999	11 11 11 11 11 11 11 11	21	0	0	11	10	0	0	17	17	0	0	17	11	0	0	19	12	0	0	13	13	0	0	13	10	0	0	8	14	0	1	24	8	merge_repeat		chromOut	simple
chr1	5377608	G	A	999	11 11 11 11 11 11 11 11	25	0	0	13	12	0	0	22	21	0	0	20	18	0	0	26	15	0	0	16	20	0	0	20	19	0	0	12	23	0	1	31	16	merge_repeat		chromOut
chr1	5377611	G	A	999	11 11 11 11 11 11 11 11	26	0	0	13	13	0	0	22	21	0	0	20	18	0	0	26	15	0	0	16	20	0	0	20	19	0	0	12	24	0	1	31	16	merge_repeat		chromOut
chr1	5377614	T	G	999	11 11 11 11 11 11 11 11	26	0	0	13	13	0	0	23	21	0	0	19	19	0	0	26	15	0	1	16	19	0	0	20	19	0	0	13	25	0	1	31	16	merge_repeat		chromOut
chr1	5377623	T	G	999	11 11 11 11 11 11 11 11	27	0	1	14	12	0	0	28	22	0	0	22	23	0	0	31	16	0	1	19	21	0	0	22	19	0	0	17	27	0	1	36	17	merge_repeat		chromOut
chr1	5840320	G	T	999	11 11 11 11 11 11 11 11	44	0	0	20	30	0	0	41	21	0	0	36	33	0	0	28	21	0	0	21	31	0	0	24	20	0	0	33	24	0	0	38	27	merge_repeat		chromOut		nested
chr1	5946869	A	G	999	11 11 11 11 11 11 11 11	28	0	0	6	23	0	0	14	20	0	0	20	21	0	0	13	15	0	0	25	14	0	0	19	19	0	0	18	15	0	0	13	19
chr1	5953029	A	T	999	11 11 11 11 11 11 11 11	38	0	0	20	18	0	0	33	30	0	0	23	20	0	0	31	29	0	0	28	30	0	0	27	20	0	0	23	20	0	0	27	20	merge_repeat	trfMask	chromOut	simple
chr1	8114205	C	T	999	11 11 11 11 11 11 11 11	57	0	0	45	32	0	0	26	44	0	0	36	27	0	0	36	41	0	0	43	24	0	0	25	32	0	0	37	33	0	0	28	33
chr1	8397853	A	G	999	11 11 11 11 11 11 11 11	25	0	0	16	11	0	0	16	15	0	0	19	13	0	0	18	20	0	0	10	20	0	0	20	10	0	0	14	11	0	0	16	12	merge_repeat		chromOut		nested
chr1	8477029	T	C	999	11 11 11 11 11 11 11 11	29	0	0	11	29	0	0	9	20	0	0	14	32	0	0	17	37	0	0	11	25	0	0	19	25	0	0	15	24	0	0	13	28	merge_repeat		chromOut
chr1	8500915	T	A	999	11 11 11 11 11 11 11 11	32	0	0	14	18	0	0	20	22	0	0	16	25	0	0	24	25	0	0	15	20	0	0	10	23	0	0	16	26	0	0	15	18	merge_repeat		chromOut		nested
chr1	8507660	A	G	999	11 11 11 11 11 11 11 11	20	0	0	14	16	0	0	19	24	0	0	16	24	0	0	16	29	0	0	13	14	0	0	20	25	0	0	10	10	0	0	14	14	merge_repeat		chromOut		nested
chr1	9057205	C	T	999	11 11 11 11 11 11 11 11	38	0	0	32	24	0	0	31	19	0	0	23	15	0	0	46	21	0	0	35	25	0	0	28	26	0	0	23	19	0	0	35	22	merge_repeat		chromOut
chr1	9453315	T	C	999	11 11 11 11 11 11 11 11	46	0	0	23	24	0	0	25	27	0	0	24	33	0	0	30	39	0	0	32	29	0	0	23	23	0	0	26	29	0	0	20	27	merge_repeat		chromOut		nested
chr1	10795084	C	A	999	11 11 11 11 11 11 11 11	55	0	0	25	32	0	0	41	27	0	0	31	25	0	0	23	35	0	0	24	40	0	0	25	32	0	0	24	31	0	0	24	39
chr1	13203417	T	G	999	11 11 11 11 11 11 11 11	22	0	0	15	7	0	0	18	15	0	0	23	10	0	0	24	13	0	0	20	13	0	0	24	16	0	0	23	10	0	0	28	12	merge_repeat			simple
chr1	13381321	T	C	999	11 11 11 11 11 11 11 11	52	0	0	27	37	0	0	47	43	0	0	39	30	0	0	46	37	0	0	43	26	0	0	32	32	0	0	30	22	0	0	28	31	merge_repeat		chromOut		nested
chr1	14641796	C	T	999	11 11 11 11 11 11 11 11	24	0	0	9	15	0	0	13	13	0	0	18	17	0	0	26	15	0	0	37	18	0	0	15	17	0	0	18	17	0	0	13	12	merge_repeat		chromOut	simple
chr1	15485014	A	G	999	11 11 11 11 11 11 11 11	29	0	0	18	15	0	0	25	22	0	0	17	20	0	0	11	18	0	0	20	19	0	0	23	18	0	0	21	16	0	0	21	23	merge_repeat		chromOut
chr1	16804929	C	G	999	11 11 11 11 11 11 11 11	63	0	0	39	32	0	0	30	35	0	0	28	38	0	0	38	32	0	0	29	34	0	0	34	40	0	0	48	33	0	0	42	32	merge_repeat		chromOut		nested
chr1	20796464	A	G	999	11 11 11 11 11 11 11 11	46	0	0	25	33	0	0	20	26	0	0	25	33	0	0	35	23	0	0	36	34	0	0	32	20	0	0	35	25	0	0	29	32	merge_repeat		chromOut		nested
chr1	21174887	G	T	999	11 11 11 11 11 11 11 11	35	0	0	20	34	0	0	18	20	0	0	22	23	0	0	20	31	0	0	19	22	0	0	19	28	0	0	15	20	0	0	24	23
chr1	21860443	C	G	999	11 11 11 11 11 11 11 11	56	0	0	42	20	0	0	42	29	0	0	35	33	0	0	33	25	0	0	44	27	0	0	27	29	0	0	36	24	0	0	40	37
chr1	22431989	T	C	999	11 11 11 11 11 11 11 11	66	0	0	46	36	0	0	33	37	0	0	34	37	0	0	36	36	0	0	36	35	0	0	34	32	0	0	36	46	0	0	41	35
chr1	24605537	C	A	999	11 11 11 11 11 11 11 11	39	0	0	24	26	0	0	29	22	0	0	29	23	0	0	25	18	0	0	32	21	0	0	21	26	0	0	19	21	0	0	21	18	merge_repeat	trfMask	chromOut	simple	nested
chr1	25825194	C	T	999	11 11 11 11 11 11 11 11	22	0	0	9	17	0	0	12	15	0	0	12	14	0	0	20	14	0	0	12	10	0	0	15	11	0	0	16	10	0	0	17	8
chr1	26686773	A	T	999	11 11 11 11 11 11 11 11	23	0	0	13	13	0	0	17	11	0	0	12	20	0	0	20	18	0	0	20	13	0	0	14	19	0	0	13	10	0	0	19	16	merge_repeat	trfMask	chromOut	simple	nested
chr1	26778677	G	T	999	11 11 11 11 11 11 11 11	39	0	0	18	26	1	0	16	40	0	0	19	21	0	0	27	35	0	0	16	23	0	0	18	35	0	0	20	27	0	0	17	26
chr1	27176273	C	A	999	11 11 11 11 11 11 11 11	20	0	0	24	10	0	0	21	6	0	0	17	4	0	0	18	6	0	0	23	9	0	0	18	2	0	0	18	5	0	0	13	10	merge_repeat		chromOut		nested
chr1	27729011	T	A	999	11 11 11 11 11 11 11 11	44	0	0	18	37	0	0	27	30	0	0	39	22	0	0	22	30	0	0	23	21	0	0	23	32	0	0	22	31	0	0	20	25	merge_repeat		chromOut		nested
chr1	28032967	A	G	999	11 11 11 11 11 11 11 11	33	0	0	26	15	0	0	32	23	0	0	21	16	0	0	16	17	0	0	20	17	0	0	26	24	0	0	26	18	0	0	22	17	merge_repeat		chromOut		nested
chr1	28033357	G	A	999	11 11 11 11 11 11 11 11	47	0	0	35	32	0	0	29	31	0	0	22	25	0	0	24	36	0	0	26	32	0	0	25	29	0	0	31	27	0	0	24	34	merge_repeat		chromOut		nested
chr1	28036531	G	C	999	11 11 11 11 11 11 11 11	41	0	0	14	37	0	0	14	32	0	0	20	26	0	0	22	29	0	0	28	35	0	0	19	29	0	0	25	36	0	0	13	28	merge_repeat		chromOut		nested
chr1	28049546	A	G	999	11 11 11 11 11 11 11 11	65	0	0	46	41	0	0	36	31	0	0	47	30	0	0	52	39	0	0	36	29	0	0	32	36	0	0	36	42	0	0	35	37
chr1	28890953	T	C	999	11 11 11 11 11 11 11 11	41	1	0	21	20	0	0	24	33	0	0	20	21	0	0	23	29	0	0	18	23	0	0	29	40	0	0	22	30	0	0	30	20	merge_repeat		chromOut		nested
chr1	30030567	A	T	999	11 11 11 11 11 11 11 11	57	0	0	22	35	0	0	42	49	0	0	37	30	0	0	30	31	0	0	36	35	0	0	33	32	0	0	31	36	0	0	33	29	merge_repeat		chromOut
chr1	31898266	A	G	999	11 11 11 11 11 11 11 11	47	0	0	34	25	0	0	39	31	0	0	40	38	0	0	42	26	0	0	26	32	0	1	22	24	0	0	32	28	0	0	37	36
chr1	34785417	T	C	999	11 11 11 11 11 11 11 11	40	0	0	27	25	0	0	26	27	0	0	21	31	0	0	27	23	0	0	28	26	0	0	18	22	0	0	21	22	0	0	20	20
chr1	37424235	C	G	999	11 11 11 11 11 11 11 11	49	0	0	23	37	0	0	47	41	0	0	25	24	0	0	34	34	0	0	35	25	0	0	35	38	0	0	34	37	0	0	28	33	merge_repeat		chromOut		nested
chr1	37424236	G	C	999	11 11 11 11 11 11 11 11	49	0	0	23	37	0	0	47	38	0	0	25	24	0	0	34	34	0	0	35	25	0	0	35	38	0	0	34	37	0	0	28	32	merge_repeat		chromOut		nested
chr1	37567432	C	A	999	11 11 11 11 11 11 11 11	24	0	0	14	13	0	0	20	14	0	0	9	15	0	0	13	16	0	0	11	19	0	0	15	19	0	0	14	19	0	0	19	11
chr1	37990570	A	G	999	11 11 11 11 11 11 11 11	49	0	0	39	27	0	0	25	30	0	0	35	23	0	0	27	25	0	0	29	20	0	0	19	37	0	0	31	27	0	0	26	33
chr1	38967064	G	C	999	11 11 11 11 11 11 11 11	51	0	0	29	22	0	0	31	35	0	0	31	27	0	0	26	31	0	0	23	32	0	0	34	37	0	0	35	32	0	0	22	38	merge_repeat		chromOut		nested
chr1	39454590	A	C	999	11 11 11 11 11 11 11 11	20	0	0	6	23	0	0	6	14	0	0	2	20	0	0	6	26	0	0	10	24	0	0	4	27	0	0	2	24	0	0	1	22	merge_repeat		chromOut
chr1	39623705	C	G	999	11 11 11 11 11 11 11 11	35	0	0	22	27	0	0	28	22	0	0	26	18	0	0	31	19	0	0	37	22	0	0	24	12	0	0	28	16	0	0	17	18	merge_repeat		chromOut
chr1	39721029	T	C	999	11 11 11 11 11 11 11 11	31	0	0	20	17	0	0	18	13	0	0	17	29	0	0	23	16	0	0	17	14	0	0	20	18	0	0	24	22	0	0	15	19
chr1	44450215	C	A	999	11 11 11 11 11 11 11 11	53	0	0	29	40	0	0	20	36	0	0	30	28	0	0	27	31	0	0	30	24	0	0	23	30	0	0	33	43	0	0	31	27	merge_repeat		chromOut
chr1	45015823	A	G	999	11 11 11 11 11 11 11 11	25	0	0	18	13	0	0	15	10	0	0	21	16	0	0	14	26	0	0	26	25	0	0	18	12	0	0	12	14	0	0	30	12	merge_repeat		chromOut		nested
chr1	46461774	A	T	999	11 11 11 11 11 11 11 11	29	0	0	23	19	0	0	18	23	0	0	15	19	0	0	26	19	0	0	18	18	0	0	15	15	0	0	11	19	0	0	11	18	merge_repeat				nested
chr1	47958998	C	G	999	11 11 11 11 11 11 11 11	50	0	0	30	36	0	0	28	33	0	0	29	28	0	0	28	22	0	0	40	40	0	0	31	43	0	0	23	39	0	0	36	25	merge_repeat		chromOut
chr1	47960617	T	C	999	11 11 11 11 11 11 11 11	24	0	0	15	10	0	0	27	22	0	0	19	15	0	0	25	25	0	0	28	15	0	0	14	10	0	0	22	15	0	0	19	15	merge_repeat		chromOut
chr1	47991922	A	G	999	11 11 11 11 11 11 11 11	58	0	0	32	37	0	0	34	51	0	0	28	40	0	0	25	33	0	0	32	30	0	0	41	40	0	0	37	28	0	0	36	38
chr1	48074630	C	A	999	11 11 11 11 11 11 11 11	50	0	0	41	24	0	0	49	31	0	0	30	34	0	0	29	33	0	0	30	31	0	0	29	28	0	0	32	18	1	0	28	48	merge_repeat		chromOut
chr1	48946390	G	A	999	11 11 11 11 11 11 11 11	68	0	0	31	48	0	0	30	57	0	0	24	52	0	0	21	50	0	0	30	38	0	0	27	50	0	0	37	62	0	0	24	45
chr1	50243897	T	C	999	11 11 11 11 11 11 11 11	48	0	0	31	30	0	0	19	29	0	0	40	31	0	0	32	30	0	0	26	30	0	0	29	22	0	0	31	27	0	0	21	37	merge_repeat		chromOut		nested
chr1	50243925	G	C	999	11 11 11 11 11 11 11 11	48	0	0	27	29	0	0	18	30	0	0	41	29	0	0	31	33	0	0	25	25	0	0	25	25	0	0	27	27	0	0	21	34	merge_repeat		chromOut		nested
chr1	51890195	A	T	999	11 11 11 11 11 11 11 11	38	0	0	35	22	0	0	34	23	0	0	24	14	0	0	32	25	0	0	32	25	0	0	22	25	0	0	26	21	0	0	24	22
chr1	52882851	T	G	999	11 11 11 11 11 11 11 11	38	0	0	17	21	0	0	31	19	0	0	29	27	0	0	18	24	0	0	30	18	0	0	26	22	0	0	26	16	0	0	23	20	merge_repeat		chromOut		nested
chr1	54089511	G	C	999	11 11 11 11 11 11 11 11	44	0	0	35	22	0	0	24	20	0	0	31	24	0	0	31	32	0	0	29	16	0	0	37	14	0	0	30	20	0	0	32	17	merge_repeat		chromOut		nested
chr1	54816157	A	T	999	11 11 11 11 11 11 11 11	44	0	0	25	27	0	0	9	36	0	0	16	28	0	1	23	37	0	0	23	26	0	0	22	28	0	0	24	28	0	0	20	29	merge_repeat		chromOut	simple
chr1	55424996	A	G	999	11 11 11 11 11 11 11 11	45	2	1	25	25	0	0	31	29	0	0	22	28	1	0	30	37	2	0	23	29	0	0	19	26	1	0	36	25	1	0	29	27
chr1	55615084	C	T	999	11 11 11 11 11 11 11 11	36	1	0	23	27	0	0	19	26	0	0	15	31	0	0	23	40	1	1	25	25	1	0	23	28	0	0	21	28	1	0	20	15	merge_repeat		chromOut		nested
chr1	57255157	A	T	999	11 11 11 11 11 11 11 11	24	0	0	7	19	0	0	6	22	0	0	5	19	0	0	8	28	0	0	12	33	0	0	8	29	0	0	9	18	0	0	9	26	merge_repeat	trfMask	chromOut	simple
chr1	58132396	A	G	999	11 11 11 11 11 11 11 11	39	0	0	14	42	0	0	10	29	0	0	19	33	0	0	11	35	0	0	9	31	0	0	19	32	0	0	14	31	0	0	20	26	merge_repeat		chromOut		nested
chr1	58213477	T	C	999	11 11 11 11 11 11 11 11	41	0	0	27	14	0	0	32	20	0	0	42	17	0	0	45	20	1	0	46	26	0	0	39	18	0	0	39	24	0	0	41	19	merge_repeat		chromOut
chr1	58438091	A	C	999	11 11 11 11 11 11 11 11	43	0	0	30	42	0	0	34	28	0	0	31	26	0	0	30	30	0	0	27	36	0	0	33	28	0	0	16	27	0	0	20	31
chr1	58775813	T	A	999	11 11 11 11 11 11 11 11	32	0	0	18	14	0	0	19	17	0	0	18	22	0	0	21	15	0	0	26	26	0	0	27	24	0	0	23	21	0	1	27	15	merge_repeat		chromOut
chr1	58775878	A	C	999	11 11 11 11 11 11 11 11	33	0	0	18	15	0	0	28	17	0	0	30	22	0	0	27	20	0	0	20	22	0	0	31	23	0	0	27	23	0	0	31	22	merge_repeat		chromOut
chr1	63607394	G	T	999	11 11 11 11 11 11 11 11	24	0	0	19	9	0	0	17	8	0	0	21	17	0	0	24	18	0	0	15	18	0	0	30	5	0	0	18	12	0	0	13	11	merge_repeat		chromOut
chr1	69200503	A	T	999	11 11 11 11 11 11 11 11	34	0	0	13	32	0	0	15	22	0	0	16	29	0	0	13	36	0	0	17	30	0	0	15	19	0	0	16	27	0	0	19	30
chr1	70199635	T	C	999	11 11 11 11 11 11 11 11	22	0	0	12	10	0	0	13	17	0	0	13	24	0	0	14	19	0	0	25	17	0	0	19	15	0	0	19	17	0	0	10	17	merge_repeat	trfMask	chromOut	simple
chr1	70847867	A	T	999	11 11 11 11 11 11 11 11	53	0	0	35	36	0	0	31	47	0	0	26	27	0	0	35	30	0	0	32	35	0	0	35	34	0	0	30	33	0	0	33	29
chr1	71150514	A	G	999	11 11 11 11 11 11 11 11	40	0	0	20	28	0	2	22	26	0	0	28	16	1	0	31	27	0	1	17	26	0	0	21	29	1	0	22	29	0	1	14	25	merge_repeat		chromOut		nested
chr1	71289378	A	C	999	11 11 11 11 11 11 11 11	21	0	0	10	11	0	0	5	26	0	0	5	19	0	0	11	22	0	0	14	39	0	0	16	20	0	0	8	19	0	0	9	23	merge_repeat	trfMask	chromOut	simple
chr1	71464636	C	T	999	11 11 11 11 11 11 11 11	21	0	0	22	4	0	0	31	7	0	0	16	5	0	0	21	9	0	0	24	5	0	0	21	5	0	0	23	8	0	0	23	9
chr1	71760840	A	C	999	11 11 11 11 11 11 11 11	30	0	0	15	21	0	0	13	17	0	0	15	27	0	0	13	26	0	0	23	22	0	0	15	18	0	0	15	19	0	0	11	23	merge_repeat		chromOut
chr1	72184484	A	G	999	11 11 11 11 11 11 11 11	53	0	0	46	26	0	0	32	36	0	0	30	41	0	0	22	40	0	0	32	30	0	0	35	24	0	0	40	28	0	0	32	21
chr1	72712557	G	A	999	11 11 11 11 11 11 11 11	39	0	0	15	24	1	0	24	17	0	0	18	27	0	1	20	28	0	1	19	20	0	1	19	27	0	0	19	32	0	1	18	41	merge_repeat		chromOut
chr1	73454722	T	A	999	11 11 11 11 11 11 11 11	28	0	0	22	18	0	0	23	19	0	0	20	28	0	0	21	20	0	0	12	16	0	0	14	25	0	0	17	22	0	0	13	21
chr1	74224886	C	G	999	11 11 11 11 11 11 11 11	34	0	0	39	7	0	0	40	11	0	0	32	16	0	0	44	10	0	0	33	11	0	0	24	10	0	0	36	15	0	0	33	6	merge_repeat		chromOut
chr1	74714947	T	G	999	11 11 11 11 11 11 11 11	21	0	0	17	11	0	0	18	10	0	0	17	13	0	0	19	18	0	0	24	29	0	0	18	14	0	0	18	18	0	0	11	10	merge_repeat	trfMask	chromOut	simple
chr1	74916505	T	C	999	11 11 11 11 11 11 11 11	53	0	0	29	24	0	0	46	25	0	0	26	30	0	0	44	24	0	0	29	30	0	0	42	31	0	0	33	24	0	0	32	21
chr1	75123227	G	A	999	11 11 11 11 11 11 11 11	59	0	0	40	26	0	0	28	40	0	0	36	34	0	0	39	34	0	0	35	32	0	0	31	40	0	0	29	30	1	0	33	29	merge_repeat		chromOut
chr1	75123258	T	C	999	11 11 11 11 11 11 11 11	59	0	0	36	26	0	0	23	40	0	0	37	34	0	0	39	38	0	0	31	30	0	0	35	39	0	0	30	29	0	0	30	32	merge_repeat		chromOut
chr1	75153957	T	A	999	11 11 11 11 11 11 11 11	34	0	0	31	18	1	0	30	19	0	0	29	16	0	0	21	27	0	0	32	20	0	0	23	16	0	0	22	12	0	0	30	27	merge_repeat		chromOut
chr1	75323599	G	A	999	11 11 11 11 11 11 11 11	36	0	0	21	15	0	0	27	16	0	0	24	18	0	0	29	15	0	0	24	22	0	0	29	16	0	0	18	21	0	0	25	20	merge_repeat		chromOut		nested
chr1	75486756	G	A	999	11 11 11 11 11 11 11 11	35	0	0	26	26	0	0	25	18	0	0	21	29	0	0	29	30	0	0	24	20	0	0	26	22	0	0	22	24	0	0	14	21
chr1	76045946	A	C	999	11 11 11 11 11 11 11 11	53	0	0	24	35	0	0	23	33	0	0	28	34	0	0	28	36	0	0	31	33	0	0	27	41	0	0	24	29	0	0	24	48
chr1	76250169	A	C	999	11 11 11 11 11 11 11 11	43	0	0	22	26	0	0	18	28	0	0	25	18	0	0	25	27	0	0	36	23	0	0	33	19	0	0	27	21	0	0	26	22	merge_repeat		chromOut
chr1	76997539	G	T	999	11 11 11 11 11 11 11 11	20	0	0	13	7	0	0	23	10	1	0	17	6	0	0	23	12	1	0	36	12	0	0	26	6	0	0	16	6	0	0	23	10	merge_repeat		chromOut
chr1	78486797	T	C	999	11 11 11 11 11 11 11 11	40	0	0	18	22	0	0	30	26	0	0	27	23	0	0	43	21	0	0	19	27	0	0	28	19	0	0	33	34	0	0	20	40
chr1	78580854	T	G	999	11 11 11 11 11 11 11 11	35	0	0	33	22	0	0	25	20	0	0	21	23	0	0	20	25	0	0	27	23	0	0	22	21	0	0	22	15	0	0	26	9	merge_repeat	trfMask	chromOut	simple	nested
chr1	78580864	T	G	999	11 11 11 11 11 11 11 11	35	0	0	35	24	0	0	28	20	0	0	23	27	0	0	22	27	0	0	28	26	0	0	24	18	0	0	19	16	0	0	30	8	merge_repeat	trfMask	chromOut	simple	nested
chr1	80052965	C	A	999	11 11 11 11 11 11 11 11	47	0	0	34	30	0	0	36	25	0	0	32	23	0	0	34	25	0	0	35	32	0	0	37	20	0	0	30	17	0	0	39	24
chr1	80052968	C	A	999	11 11 11 11 11 11 11 11	48	0	0	36	30	0	0	36	25	0	0	32	23	0	0	35	25	0	0	36	32	0	0	37	19	0	0	30	18	0	0	39	23
chr1	80655078	C	T	999	11 11 11 11 11 11 11 11	38	0	0	22	31	0	0	25	35	0	0	29	41	0	0	19	19	0	0	29	32	0	0	24	34	0	0	24	30	0	0	13	28	merge_repeat	trfMask	chromOut	simple
chr1	81118897	G	A	999	11 11 11 11 11 11 11 11	44	0	0	33	30	0	0	32	21	0	0	26	31	0	0	40	45	0	0	29	34	0	0	49	33	0	0	22	22	0	0	45	24
chr1	81856905	A	C	999	11 11 11 11 11 11 11 11	29	0	0	24	18	0	0	21	21	0	0	19	10	0	0	24	21	0	0	19	21	0	0	14	20	0	0	25	17	0	0	18	16	merge_repeat		chromOut
chr1	82075511	T	C	999	11 11 11 11 11 11 11 11	49	0	0	35	30	0	0	41	38	0	0	42	24	0	0	30	26	0	0	37	20	0	0	27	27	0	0	33	28	0	0	27	22
chr1	82558275	G	C	999	11 11 11 11 11 11 11 11	40	0	0	19	25	0	0	28	30	0	0	26	22	0	0	26	22	0	0	17	23	0	0	29	18	0	0	27	15	0	0	18	22	merge_repeat		chromOut
chr1	82558310	A	T	999	11 11 11 11 11 11 11 11	44	0	0	23	23	0	0	29	31	0	0	31	21	0	0	23	25	0	0	19	25	0	0	28	24	0	0	28	18	0	0	21	25	merge_repeat		chromOut
chr1	82628275	C	A	999	11 11 11 11 11 11 11 11	25	0	0	16	19	0	0	15	24	0	1	22	19	0	0	28	12	0	0	16	16	0	1	11	21	0	0	18	17	0	0	14	11
chr1	82629169	G	A	999	11 11 11 11 11 11 11 11	24	0	0	29	3	0	0	32	8	0	0	21	6	0	0	30	11	0	0	28	16	0	0	18	6	0	0	19	9	0	0	27	3
chr1	82629225	G	T	999	11 11 11 11 11 11 11 11	26	0	0	25	9	0	0	30	7	0	0	22	10	0	0	31	14	0	0	28	13	0	0	27	8	0	0	19	11	0	0	22	4
chr1	82629247	C	A	999	11 11 11 11 11 11 11 11	26	0	0	23	9	0	0	27	8	0	0	24	11	0	0	30	14	0	0	27	12	0	0	32	9	0	0	19	10	0	0	23	3
chr1	82651571	G	T	999	11 11 11 11 11 11 11 11	41	0	0	28	23	0	0	31	25	0	0	24	19	0	0	21	22	0	0	38	27	0	0	29	21	0	0	21	20	0	0	31	26
chr1	82652995	G	A	999	11 11 11 11 11 11 11 11	23	0	0	14	14	0	0	12	11	0	0	17	15	0	0	18	24	0	0	18	27	0	0	18	14	0	0	10	22	0	0	11	13
chr1	84299274	T	G	999	11 11 11 11 11 11 11 11	26	0	0	20	9	0	0	20	11	0	0	23	11	0	0	27	15	0	0	37	13	0	0	19	10	0	0	26	6	0	0	19	7	merge_repeat		chromOut	simple
chr1	84989576	T	C	999	11 11 11 11 11 11 11 11	52	0	0	18	45	0	0	12	40	1	0	26	50	0	0	33	28	0	0	27	43	0	0	31	37	0	0	16	37	2	2	16	46	merge_repeat		chromOut			segmentDup
chr1	85070728	T	C	999	11 11 11 11 11 11 11 11	59	1	0	66	3	1	0	54	4	0	1	66	2	0	0	61	2	0	0	82	5	0	0	74	1	1	0	74	7	1	0	60	2	merge_repeat					segmentDup
chr1	85164652	C	T	298	11 11 11 11 11 11 11 11	20	0	1	5	29	0	0	8	27	0	0	5	15	1	0	12	32	0	0	6	32	0	0	5	20	0	1	4	28	0	1	5	30	merge_repeat					segmentDup
chr1	85248021	T	G	304	11 11 11 11 11 11 11 11	34	1	0	3	46	0	0	3	42	0	0	2	36	0	0	10	36	0	0	2	37	0	0	7	28	0	0	4	45	0	0	5	29	merge_repeat					segmentDup
chr1	85320193	A	C	332	11 11 11 11 11 11 11 11	38	0	1	3	34	1	1	6	49	0	0	1	45	0	0	2	60	0	0	4	34	0	1	6	37	0	0	6	42	1	0	6	51	merge_repeat		chromOut			segmentDup
chr1	85346476	G	T	288	11 11 11 11 11 11 11 11	32	1	1	14	21	1	0	13	23	0	1	10	32	0	0	18	21	0	0	20	20	0	0	13	25	0	1	15	22	0	0	7	25	merge_repeat					segmentDup
chr1	85460361	G	A	190	11 11 11 11 11 11 11 11	32	0	0	28	11	1	0	25	6	1	0	34	16	1	0	34	18	0	0	33	18	0	1	29	9	0	0	30	13	0	0	24	14	merge_repeat		chromOut			segmentDup
chr1	85488275	T	C	999	11 11 11 11 11 11 11 11	20	0	0	4	25	0	0	5	34	0	0	7	27	1	0	10	29	0	0	5	28	0	0	6	30	0	0	4	27	0	0	2	18	merge_repeat					segmentDup
chr1	85565352	A	T	188	11 11 11 11 11 11 11 11	32	2	1	39	18	0	0	30	13	0	0	39	9	0	0	51	11	1	1	53	8	0	0	46	4	2	1	33	13	0	0	26	6	merge_repeat		chromOut		nested	segmentDup
chr1	85565506	C	T	132	11 11 11 11 11 11 11 11	24	0	0	24	17	0	0	27	10	0	0	21	17	1	0	28	11	0	0	32	9	0	0	29	22	0	0	20	15	0	0	17	7	merge_repeat		chromOut		nested	segmentDup
chr1	85573981	T	G	717	11 11 11 11 11 11 11 11	30	0	0	14	42	0	0	10	23	0	1	9	27	0	0	6	32	0	0	14	28	0	0	9	33	1	0	8	35	0	0	8	22	merge_repeat					segmentDup
chr1	85621644	C	T	999	11 11 11 11 11 11 11 11	29	0	1	15	38	0	0	11	40	0	0	9	37	0	0	11	32	0	0	11	33	0	1	6	22	0	0	9	32	1	0	7	29	merge_repeat					segmentDup
chr1	85814391	T	A	999	11 11 11 11 11 11 11 11	27	0	0	7	24	0	0	12	15	0	0	8	21	0	0	13	21	0	0	14	20	0	1	8	22	0	0	4	29	0	0	10	23	merge_repeat		chromOut
chr1	85939262	A	C	999	11 11 11 11 11 11 11 11	36	0	0	18	30	0	0	23	34	0	0	21	36	0	0	20	33	0	0	17	34	0	0	15	28	0	0	16	35	0	0	15	21
chr1	85939263	C	A	999	11 11 11 11 11 11 11 11	36	0	0	18	30	0	0	23	33	0	0	21	36	0	0	20	31	0	0	17	34	0	0	15	27	0	0	16	30	0	0	15	21
chr1	88300123	T	A	999	11 11 11 11 11 11 11 11	299	0	0	152	147	0	0	182	162	0	0	154	204	0	0	163	158	0	0	164	185	0	0	173	158	0	0	170	178	0	0	166	175
chr1	88301311	C	G	999	11 11 11 11 11 11 11 11	309	0	0	141	171	0	0	168	144	0	0	158	151	0	0	175	137	0	0	183	186	0	0	166	161	0	0	149	176	0	0	158	178
chr1	88301317	C	A	999	11 11 11 11 11 11 11 11	311	0	0	140	173	0	0	165	146	0	1	163	149	0	0	177	142	0	0	178	188	0	0	170	164	0	0	151	170	0	1	154	174	merge_repeat		chromOut
chr1	88386881	G	C	999	11 11 11 11 11 11 11 11	26	0	0	18	20	0	0	9	17	0	0	19	31	0	0	21	37	0	0	18	31	0	0	14	29	0	0	17	23	0	0	13	21	merge_repeat			simple
chr1	90092763	T	G	999	11 11 11 11 11 11 11 11	21	0	0	23	14	0	0	12	9	0	0	16	22	0	0	25	18	0	0	23	14	0	0	19	9	0	0	18	16	0	0	10	12	merge_repeat		chromOut	simple
chr1	90193763	C	G	999	11 11 11 11 11 11 11 11	31	0	0	33	4	0	0	33	6	0	0	25	7	0	0	31	9	0	0	36	3	0	0	30	10	0	0	44	3	0	0	23	8
chr1	90882033	G	C	999	11 11 11 11 11 11 11 11	35	0	0	29	21	0	0	27	26	0	0	22	31	0	0	22	28	0	0	19	24	0	0	16	19	0	0	15	22	0	0	15	25	merge_repeat		chromOut		nested
chr1	91291262	A	C	999	11 11 11 11 11 11 11 11	51	0	0	22	30	0	0	32	40	0	0	23	28	0	0	36	49	0	0	43	49	0	0	25	35	0	0	41	43	0	0	26	31	merge_repeat		chromOut
chr1	92828506	C	A	999	11 11 11 11 11 11 11 11	29	0	0	15	19	0	0	14	25	0	0	19	19	0	0	24	30	0	0	13	26	0	0	17	29	0	0	11	18	1	0	15	22
chr1	94139998	T	G	999	11 11 11 11 11 11 11 11	25	0	0	28	5	0	0	29	6	0	0	26	6	0	0	26	9	0	0	28	6	0	0	20	5	0	0	17	12	0	0	22	4
chr1	94140005	T	G	999	11 11 11 11 11 11 11 11	30	0	1	22	7	0	0	24	14	1	0	25	21	0	0	22	19	0	0	24	6	0	0	19	13	0	0	14	16	0	1	20	9
chr1	95625917	C	T	999	11 11 11 11 11 11 11 11	49	0	0	31	30	0	0	25	33	0	0	33	39	0	0	25	32	0	0	28	30	0	0	24	28	0	0	28	37	0	0	22	27
chr1	95801844	G	T	999	11 11 11 11 11 11 11 11	23	0	0	8	26	0	0	8	22	0	0	14	15	0	0	11	17	0	0	7	16	0	0	15	31	0	0	11	17	0	0	8	19
chr1	96671071	C	A	999	11 11 11 11 11 11 11 11	40	0	0	27	26	0	0	26	15	0	0	23	17	0	0	26	20	0	0	26	30	0	0	20	21	0	0	30	20	0	0	20	21	merge_repeat		chromOut		nested
chr1	96671137	C	A	999	11 11 11 11 11 11 11 11	39	0	0	30	26	0	0	36	22	0	0	26	18	0	0	26	30	0	0	17	33	0	0	26	17	0	0	23	21	0	0	21	18	merge_repeat		chromOut		nested
chr1	96671928	C	A	999	11 11 11 11 11 11 11 11	39	0	0	20	19	0	0	29	34	0	0	23	27	0	0	15	24	0	0	26	18	0	0	25	24	0	0	35	28	0	0	28	21	merge_repeat		chromOut		nested
chr1	96671939	G	A	999	11 11 11 11 11 11 11 11	40	0	0	23	17	0	0	26	36	0	0	23	26	0	0	16	26	0	0	32	17	0	0	28	23	0	0	34	32	0	0	30	23	merge_repeat		chromOut		nested
chr1	96746345	T	G	999	11 11 11 11 11 11 11 11	41	0	0	35	21	0	0	27	20	0	0	36	23	0	0	26	30	0	0	28	25	0	0	30	26	0	0	26	21	0	0	21	20	merge_repeat		chromOut
chr1	96746346	C	A	999	11 11 11 11 11 11 11 11	41	0	0	35	21	0	0	27	20	0	0	36	23	0	0	26	30	0	0	28	25	0	0	30	26	0	0	26	21	0	0	21	20	merge_repeat		chromOut
chr1	96746347	C	A	999	11 11 11 11 11 11 11 11	41	0	0	35	21	0	0	27	20	0	0	36	23	0	0	26	30	0	0	28	25	0	0	30	26	0	0	26	21	0	0	21	20	merge_repeat		chromOut
chr1	96769581	T	C	999	11 11 11 11 11 11 11 11	23	0	0	15	8	0	0	13	11	0	0	23	13	0	0	13	13	0	0	13	17	0	0	12	17	0	0	14	17	0	0	15	9	merge_repeat		chromOut
chr1	96769586	T	C	999	11 11 11 11 11 11 11 11	21	0	0	13	8	0	0	13	12	0	0	20	13	0	0	13	13	0	0	13	16	0	0	12	17	0	0	14	18	0	0	14	7	merge_repeat		chromOut
chr1	97742844	A	G	999	11 11 11 11 11 11 11 11	21	0	0	6	15	0	0	3	20	0	0	5	26	0	0	6	33	0	0	3	22	0	0	2	24	0	0	6	28	0	0	2	25	merge_repeat		chromOut
chr1	98142545	G	A	999	11 11 11 11 11 11 11 11	46	0	0	26	24	0	0	30	25	0	0	22	24	0	0	32	27	0	0	29	24	0	0	26	27	0	0	24	24	0	0	28	22
chr1	98142563	A	T	999	11 11 11 11 11 11 11 11	30	0	0	16	14	0	0	21	23	0	0	24	20	0	0	26	20	0	0	22	19	0	0	16	17	0	0	17	26	0	0	23	17	merge_repeat		chromOut	simple
chr1	98143041	A	G	999	11 11 11 11 11 11 11 11	36	0	0	19	25	0	0	18	20	0	0	18	30	0	0	21	37	0	0	20	34	0	0	19	17	0	0	22	21	0	0	18	21
chr1	98275309	A	G	999	11 11 11 11 11 11 11 11	21	0	0	14	8	0	0	10	13	0	0	18	18	0	0	16	15	0	0	16	9	0	0	11	15	0	0	14	7	0	0	15	11	merge_repeat		chromOut
chr1	100897915	C	A	999	11 11 11 11 11 11 11 11	21	0	1	20	3	0	0	23	8	0	0	22	8	0	0	27	6	0	0	26	7	0	0	13	8	0	0	19	6	0	0	25	2	merge_repeat		chromOut
chr1	100902590	A	G	999	11 11 11 11 11 11 11 11	21	0	0	17	23	0	0	9	18	0	0	8	20	0	0	13	25	0	0	5	16	0	0	8	16	0	0	14	24	0	0	11	19
chr1	101960521	G	A	999	11 11 11 11 11 11 11 11	43	0	0	28	37	0	0	38	33	0	0	39	31	0	0	33	22	0	0	37	28	0	0	20	23	0	0	35	42	0	0	35	33
chr1	103969761	G	A	999	11 11 11 11 11 11 11 11	45	0	0	25	25	0	0	31	28	0	1	27	27	0	0	25	33	0	0	26	24	0	0	23	22	0	0	22	34	0	1	21	26	merge_repeat	trfMask	chromOut	simple
chr1	104159280	T	A	999	11 11 11 11 11 11 11 11	27	0	0	18	13	0	0	23	22	0	0	14	13	0	0	31	19	0	0	18	18	0	0	21	16	0	0	14	18	0	0	18	16	merge_repeat		chromOut	simple	nested
chr1	105335135	T	C	999	11 11 11 11 11 11 11 11	50	0	0	24	26	0	0	40	27	0	0	26	35	0	0	34	24	0	0	22	40	0	0	31	42	0	0	33	27	0	0	43	32
chr1	105830236	G	C	999	11 11 11 11 11 11 11 11	32	0	0	15	17	0	0	25	25	0	0	21	27	0	0	23	36	0	0	30	33	0	0	15	25	0	0	21	26	0	0	25	19	merge_repeat		chromOut		nested
chr1	105860714	A	G	999	11 11 11 11 11 11 11 11	37	0	0	25	21	0	0	26	18	0	0	22	18	0	0	37	16	0	0	22	16	0	0	23	14	0	0	29	14	0	0	23	23	merge_repeat		chromOut
chr1	105917649	A	G	999	11 11 11 11 11 11 11 11	25	0	0	16	16	0	0	15	13	0	0	7	19	0	0	11	17	0	0	9	16	0	0	13	20	0	0	12	17	0	0	17	16	merge_repeat	trfMask	chromOut	simple	nested
chr1	106485985	A	G	999	11 11 11 11 11 11 11 11	60	0	0	28	34	0	1	36	33	0	0	30	33	0	0	30	30	0	0	35	42	0	0	37	30	0	0	36	35	0	0	41	36	merge_repeat		chromOut		nested
chr1	106516464	A	C	999	11 11 11 11 11 11 11 11	41	0	0	29	26	0	0	20	36	0	0	21	26	0	0	25	28	0	0	29	33	0	0	23	18	0	0	24	33	0	0	26	22	merge_repeat		chromOut
chr1	107916205	C	T	999	11 11 11 11 11 11 11 11	20	0	0	12	10	0	0	11	15	0	0	16	14	0	0	19	13	1	0	19	11	0	0	13	14	0	0	11	10	0	0	7	13	merge_repeat	trfMask	chromOut	simple
chr1	108056241	C	A	999	11 11 11 11 11 11 11 11	31	0	0	12	20	0	0	10	21	0	0	12	27	0	0	13	27	0	0	8	27	0	0	6	30	0	0	7	25	0	0	8	29
chr1	108056290	T	C	999	11 11 11 11 11 11 11 11	20	0	0	6	14	0	0	9	15	0	0	8	15	0	0	11	23	0	0	10	17	0	0	10	20	0	0	5	17	0	0	5	22
chr1	108586325	C	T	999	11 11 11 11 11 11 11 11	51	0	0	25	30	0	0	22	32	0	0	31	26	0	0	20	31	0	0	31	25	0	0	22	29	0	0	23	29	0	0	22	30	merge_repeat		chromOut		nested
chr1	108739661	G	A	999	11 11 11 11 11 11 11 11	28	0	1	25	8	0	1	21	6	0	0	29	5	0	0	30	12	0	0	31	6	0	0	26	6	0	1	29	11	0	0	23	6	merge_repeat		chromOut	simple	nested
chr1	110235538	G	A	999	11 11 11 11 11 11 11 11	42	0	0	21	23	0	0	24	22	0	0	25	28	0	0	27	31	0	0	17	30	0	0	17	25	0	0	24	31	0	0	27	19	merge_repeat		chromOut		nested
chr1	110316206	C	A	999	11 11 11 11 11 11 11 11	54	0	0	26	31	0	0	31	23	0	0	29	30	0	0	38	33	0	0	25	33	0	0	21	38	0	0	27	33	0	0	35	38	merge_repeat		chromOut		nested
chr1	110325794	G	T	999	11 11 11 11 11 11 11 11	22	0	0	22	11	0	0	23	7	0	0	25	5	0	0	25	11	0	0	25	13	0	0	16	6	0	0	26	14	0	0	29	10	merge_repeat		chromOut		nested
chr1	110668709	A	G	999	11 11 11 11 11 11 11 11	46	0	0	30	25	0	0	26	26	0	0	31	23	0	0	28	29	0	0	27	27	0	0	26	27	0	0	23	23	0	0	24	26	merge_repeat		chromOut
chr1	110699364	A	G	999	11 11 11 11 11 11 11 11	50	0	0	14	39	0	0	17	33	0	0	24	29	0	0	21	35	0	0	13	40	0	0	22	32	0	0	23	44	0	0	20	38	merge_repeat		chromOut
chr1	111100039	A	C	999	11 11 11 11 11 11 11 11	44	0	0	26	22	0	0	16	28	0	0	22	27	0	0	32	21	0	0	28	34	0	0	25	32	0	0	41	23	0	0	28	37	merge_repeat	trfMask	chromOut	simple
chr1	112639009	C	A	999	11 11 11 11 11 11 11 11	48	0	0	38	29	0	0	33	21	0	0	39	31	0	0	32	26	0	0	31	32	0	0	38	29	0	0	38	21	0	0	24	24	merge_repeat		chromOut
chr1	113061469	G	C	999	11 11 11 11 11 11 11 11	52	0	0	30	28	0	0	47	43	0	0	29	23	0	0	33	25	0	0	22	37	0	0	27	31	1	0	25	32	0	0	30	28	merge_repeat		chromOut		nested
chr1	113538833	T	A	999	11 11 11 11 11 11 11 11	34	0	0	10	34	0	0	16	42	0	0	6	28	0	0	31	28	0	0	24	30	0	0	4	33	0	0	7	42	0	0	7	30	merge_repeat		chromOut
chr1	114087520	C	A	999	11 11 11 11 11 11 11 11	41	0	0	32	13	0	0	28	22	0	0	22	25	0	0	18	23	0	0	33	20	0	0	20	32	0	0	20	21	0	0	28	18	merge_repeat		chromOut
chr1	118289266	G	T	999	11 11 11 11 11 11 11 11	29	0	0	13	30	0	0	14	18	0	0	8	21	0	0	25	35	0	0	22	33	0	0	13	21	0	0	17	29	0	0	15	30	merge_repeat		chromOut	simple
chr1	118823406	T	A	999	11 11 11 11 11 11 11 11	31	0	0	16	22	0	0	22	14	0	0	28	17	0	0	30	16	0	0	30	18	0	0	22	9	0	0	22	19	0	0	20	17	merge_repeat	trfMask		simple
chr1	119453565	T	A	999	11 11 11 11 11 11 11 11	24	0	0	7	26	0	0	2	22	0	0	9	19	0	0	12	32	0	0	7	22	0	0	10	18	0	0	8	19	0	0	7	19
chr1	119453567	T	A	999	11 11 11 11 11 11 11 11	25	0	0	7	26	0	0	3	22	0	0	9	19	0	0	12	32	0	0	7	22	0	0	10	18	0	0	8	19	0	0	7	19
chr1	120034222	G	A	999	11 11 11 11 11 11 11 11	30	1	0	22	14	0	0	22	13	0	0	27	17	0	0	24	34	0	0	29	17	0	0	17	13	0	0	31	20	0	1	17	13	merge_repeat	trfMask	chromOut	simple	nested
chr1	120034469	G	A	999	11 11 11 11 11 11 11 11	38	0	0	8	30	0	0	11	42	0	1	14	36	0	0	15	32	0	0	15	40	0	0	8	34	0	0	13	40	0	0	14	28	merge_repeat		chromOut
chr1	120034501	G	A	999	11 11 11 11 11 11 11 11	30	0	0	7	31	0	0	12	40	0	0	14	31	0	0	12	25	0	0	13	33	0	0	6	24	0	0	10	36	0	0	9	23	merge_repeat		chromOut
chr1	120034504	T	C	999	11 11 11 11 11 11 11 11	30	0	0	7	31	0	0	13	40	0	0	14	31	0	0	12	25	0	0	13	33	0	0	6	24	0	0	11	36	0	0	9	23	merge_repeat		chromOut
chr1	120034538	T	G	999	11 11 11 11 11 11 11 11	21	0	0	12	15	0	0	16	21	0	0	16	17	0	0	16	12	0	0	19	18	0	0	9	12	0	0	14	22	0	0	8	15	merge_repeat		chromOut
chr1	121801128	C	G	999	11 11 11 11 11 11 11 11	22	0	0	13	9	0	0	20	20	0	0	15	14	0	0	18	19	0	0	25	19	0	0	17	15	0	0	22	7	0	0	16	12	merge_repeat	trfMask	chromOut	simple
chr1	122717656	G	A	999	11 11 11 11 11 11 11 11	38	0	0	23	21	0	0	36	29	0	0	32	24	0	0	25	27	0	0	25	31	0	0	39	18	0	0	32	24	0	0	26	12	merge_repeat		chromOut		nested
chr1	122968096	T	C	999	11 11 11 11 11 11 11 11	25	0	0	14	21	0	0	19	20	0	0	15	16	0	0	19	26	0	0	12	19	0	0	16	9	0	0	11	17	0	0	10	22	merge_repeat		chromOut		nested
chr1	123631655	T	A	999	11 11 11 11 11 11 11 11	42	0	0	26	21	0	0	27	20	0	0	41	12	0	0	28	14	0	0	31	15	0	0	34	13	0	0	37	16	0	0	32	12	merge_repeat	trfMask	chromOut	simple
chr1	123631667	T	A	999	11 11 11 11 11 11 11 11	37	0	0	22	15	0	0	26	19	0	0	38	15	0	0	30	13	0	0	32	16	0	0	30	11	0	0	36	14	0	0	37	11	merge_repeat	trfMask	chromOut	simple
chr1	123918520	A	G	999	11 11 11 11 11 11 11 11	26	0	0	6	20	0	0	8	19	0	0	10	19	0	0	6	21	0	0	5	31	0	0	8	22	0	0	10	20	0	0	3	25
chr1	124453155	A	G	999	11 11 11 11 11 11 11 11	44	0	0	20	34	0	0	26	26	0	0	19	29	0	0	25	22	0	0	16	35	0	0	17	28	0	0	29	26	0	0	22	22
chr1	124505316	T	G	999	11 11 11 11 11 11 11 11	35	0	0	18	17	0	0	15	27	0	0	20	30	0	0	25	29	0	0	22	31	0	0	21	19	0	0	13	29	0	0	23	31	merge_repeat		chromOut
chr1	124506891	A	G	999	11 11 11 11 11 11 11 11	57	0	0	41	26	0	0	43	29	0	0	42	26	0	0	48	36	0	0	41	30	0	0	33	24	0	0	39	33	0	0	43	35
chr1	124506948	A	G	999	11 11 11 11 11 11 11 11	62	0	0	35	27	0	0	38	31	0	0	37	32	0	0	51	40	0	0	39	27	0	0	36	28	0	0	38	35	0	0	42	27
chr1	124507010	A	G	999	11 11 11 11 11 11 11 11	34	0	0	17	24	0	0	24	27	0	0	23	25	0	0	26	36	0	0	28	24	0	0	19	23	0	0	31	24	0	0	20	14
chr1	124507031	A	G	999	11 11 11 11 11 11 11 11	33	0	0	13	24	0	0	20	30	0	0	23	26	0	0	24	30	0	0	19	25	0	0	19	23	0	0	30	21	0	0	18	15
chr1	124507164	A	G	999	11 11 11 11 11 11 11 11	59	0	0	22	40	0	0	18	41	0	0	19	48	0	0	33	51	0	0	28	47	0	1	19	41	0	0	30	36	0	0	22	50
chr1	124507180	A	G	999	11 11 11 11 11 11 11 11	56	0	0	20	40	0	0	17	39	0	0	16	46	0	0	32	55	0	0	29	45	0	0	17	40	0	0	29	39	0	0	21	48
chr1	124507375	A	G	999	11 11 11 11 11 11 11 11	20	0	0	5	18	0	0	2	26	0	0	2	21	0	0	1	28	0	0	3	28	0	0	2	18	0	0	7	30	0	0	4	27	merge_repeat		chromOut
chr1	124507445	A	T	999	11 11 11 11 11 11 11 11	21	0	0	13	20	0	0	7	25	0	0	8	19	0	1	6	29	0	0	9	29	0	0	2	19	0	0	8	34	0	0	6	27
chr1	124637102	A	T	999	11 11 11 11 11 11 11 11	47	0	0	30	18	0	0	23	31	0	0	27	35	0	0	27	32	0	0	30	37	0	0	25	22	0	0	28	26	0	0	32	39
chr1	125000103	A	G	999	11 11 11 11 11 11 11 11	45	0	0	20	32	0	0	38	39	0	0	32	29	0	0	19	26	0	0	26	22	0	0	25	31	0	0	24	23	0	0	27	23	merge_repeat		chromOut
chr1	125104040	A	T	999	11 11 11 11 11 11 11 11	23	0	0	14	10	0	0	14	9	0	0	20	12	0	0	20	13	0	0	22	9	0	0	25	10	0	0	14	11	0	0	22	8	merge_repeat		chromOut
chr1	126321662	G	C	999	11 11 11 11 11 11 11 11	40	0	0	21	29	0	0	21	37	0	0	13	28	0	0	30	26	0	0	29	22	0	0	19	26	0	0	18	33	0	0	18	22	merge_repeat		chromOut
chr1	126479200	T	C	999	11 11 11 11 11 11 11 11	48	0	0	32	28	0	0	44	25	0	0	31	17	0	0	45	32	0	0	33	27	0	0	33	22	0	0	34	23	0	0	33	29	merge_repeat		chromOut
chr1	127008647	T	C	999	11 11 11 11 11 11 11 11	36	0	0	20	17	0	0	26	16	0	0	29	22	0	0	29	31	0	0	35	40	0	0	29	29	0	0	24	23	0	0	23	13
chr1	127245038	T	C	999	11 11 11 11 11 11 11 11	24	0	0	14	17	0	0	16	18	0	0	14	22	0	0	11	21	0	0	23	22	0	0	12	12	0	0	14	20	0	0	12	12	merge_repeat		chromOut
chr1	127520193	C	T	999	11 11 11 11 11 11 11 11	22	1	1	12	13	1	0	13	8	1	1	13	9	0	0	32	12	0	1	26	14	1	0	23	7	0	0	22	9	0	0	16	13	merge_repeat	trfMask	chromOut	simple
chr1	128000154	A	G	999	11 11 11 11 11 11 11 11	42	0	0	22	24	0	0	27	21	0	0	20	28	0	0	26	38	0	0	31	21	0	0	26	25	0	0	22	20	0	0	21	26
chr1	128795248	T	A	999	11 11 11 11 11 11 11 11	20	0	0	14	11	0	0	9	12	0	0	12	13	0	0	9	11	0	0	11	14	0	0	8	12	0	0	15	11	0	0	15	12
chr1	128795261	G	C	999	11 11 11 11 11 11 11 11	23	0	0	19	15	0	0	11	13	0	0	11	16	0	0	13	10	0	0	16	13	0	0	14	10	0	0	16	10	0	0	16	15
chr1	128880501	C	A	999	11 11 11 11 11 11 11 11	33	0	0	22	17	0	0	23	10	0	0	29	19	0	0	21	18	0	0	34	13	0	0	24	20	0	0	23	18	0	0	19	14	merge_repeat		chromOut	simple	nested
chr1	130904941	A	G	999	11 11 11 11 11 11 11 11	53	0	0	32	28	0	0	42	37	0	0	32	21	0	0	36	25	0	0	37	36	0	0	38	32	0	0	29	30	0	0	36	24
chr1	130904967	T	G	999	11 11 11 11 11 11 11 11	59	0	0	34	31	0	0	42	35	0	0	40	19	0	0	41	33	0	0	42	31	0	0	42	28	0	0	32	27	0	0	39	24
chr1	131167067	G	A	999	11 11 11 11 11 11 11 11	43	0	0	24	29	0	0	25	25	0	0	25	29	0	0	14	32	0	0	19	28	0	0	14	29	0	0	25	27	0	0	21	26	merge_repeat		chromOut
chr1	131167070	C	A	999	11 11 11 11 11 11 11 11	44	0	0	23	30	0	0	25	25	0	0	27	29	0	0	14	32	0	0	20	26	0	0	15	29	0	0	24	27	0	0	22	26	merge_repeat		chromOut
chr1	131275463	T	C	999	11 11 11 11 11 11 11 11	23	0	0	10	19	0	0	7	16	0	0	12	22	0	0	11	23	0	0	13	34	0	0	8	16	0	0	10	15	0	0	14	9
chr1	133112655	C	A	999	11 11 11 11 11 11 11 11	24	0	0	17	19	0	0	13	21	0	0	11	32	0	0	17	30	0	0	28	28	0	0	14	29	0	0	14	10	0	0	17	12	merge_repeat		chromOut
chr1	133478919	A	G	999	11 11 11 11 11 11 11 11	29	0	0	23	19	0	0	21	25	0	0	26	21	0	0	27	35	0	0	21	25	0	0	18	11	0	0	29	19	0	0	28	17	merge_repeat	trfMask	chromOut	simple
chr1	133487079	C	A	999	11 11 11 11 11 11 11 11	45	0	0	23	27	0	0	32	34	0	0	23	26	0	0	33	28	0	0	33	28	0	0	29	16	0	0	30	22	0	0	26	23	merge_repeat		chromOut
chr1	133487112	T	C	999	11 11 11 11 11 11 11 11	48	0	0	23	28	0	0	31	36	0	0	25	28	0	0	37	27	0	0	29	32	0	0	27	22	0	0	28	20	0	0	24	28	merge_repeat		chromOut
chr1	133487135	T	C	999	11 11 11 11 11 11 11 11	46	0	0	29	34	0	0	36	31	0	0	28	32	0	0	37	28	0	0	28	37	0	0	27	28	0	0	25	21	0	0	24	27	merge_repeat		chromOut
chr1	133487164	T	C	999	11 11 11 11 11 11 11 11	51	0	0	27	29	0	0	38	37	0	0	30	35	0	0	31	34	0	0	27	36	0	0	25	27	0	0	27	28	0	0	26	25
chr1	133838897	T	G	999	11 11 11 11 11 11 11 11	35	0	0	28	12	0	0	41	13	0	0	29	6	0	0	34	12	0	0	41	19	0	0	31	10	0	0	32	19	0	0	28	13	merge_repeat	trfMask	chromOut	simple	nested
chr1	134773266	C	A	999	11 11 11 11 11 11 11 11	23	0	0	20	4	0	0	27	7	0	0	19	4	0	0	22	6	0	0	21	9	0	0	19	6	0	0	21	10	0	0	19	8
chr1	136405921	A	G	999	11 11 11 11 11 11 11 11	24	0	0	18	18	0	0	20	19	0	0	18	17	0	0	17	7	0	0	17	15	0	0	10	16	0	0	13	14	0	0	10	14	merge_repeat		chromOut
chr1	136461507	T	G	999	11 11 11 11 11 11 11 11	45	0	0	27	40	0	0	33	28	0	0	22	29	0	0	28	42	0	0	17	29	0	0	21	24	0	0	30	40	0	0	16	36
chr1	136481605	G	T	999	11 11 11 11 11 11 11 11	22	0	0	17	15	0	0	12	20	0	0	8	20	0	0	14	13	0	0	13	19	0	0	8	16	0	0	17	17	0	0	11	11	merge_repeat		chromOut
chr1	140273627	C	T	999	11 11 11 11 11 11 11 11	60	0	0	38	37	0	0	41	48	0	0	33	27	0	0	31	50	0	0	34	32	0	0	37	28	0	0	27	41	0	0	32	38
chr1	141577928	C	A	999	11 11 11 11 11 11 11 11	24	0	0	22	9	0	0	16	15	0	0	18	10	0	0	20	12	0	0	20	5	0	0	18	6	0	0	21	8	0	0	17	7	merge_repeat				nested
chr1	141827352	G	C	999	11 11 11 11 11 11 11 11	45	0	0	27	37	0	0	54	34	0	0	37	18	0	0	33	19	0	0	37	28	0	0	24	21	0	0	41	33	0	0	14	33	merge_repeat		chromOut
chr1	142125135	A	G	999	11 11 11 11 11 11 11 11	20	0	0	15	15	0	0	11	22	0	0	8	19	0	0	20	24	0	0	13	8	0	0	17	21	0	0	18	13	0	0	12	8	merge_repeat				nested
chr1	144406147	T	G	999	11 11 11 11 11 11 11 11	21	0	0	9	13	0	0	9	17	0	0	7	19	0	0	16	23	0	0	13	25	0	0	9	13	0	0	7	14	0	0	9	22	merge_repeat		chromOut
chr1	144523187	G	C	999	11 11 11 11 11 11 11 11	53	0	0	35	47	0	0	40	38	0	0	23	37	0	0	28	44	0	0	36	31	0	0	23	32	0	0	28	38	0	0	26	27
chr1	144695531	G	C	999	11 11 11 11 11 11 11 11	46	0	0	30	42	0	0	28	35	0	0	32	32	0	0	36	36	0	0	30	46	0	0	21	25	0	0	42	40	0	0	30	40
chr1	144739502	T	A	999	11 11 11 11 11 11 11 11	31	0	0	13	33	0	0	28	24	0	0	9	22	0	0	17	30	0	0	14	30	0	0	16	20	0	0	20	17	0	0	25	29	merge_repeat		chromOut		nested
chr1	144820126	A	T	999	11 11 11 11 11 11 11 11	25	0	0	8	22	0	0	16	17	0	1	2	22	0	0	4	28	0	0	17	17	0	0	6	21	0	0	13	21	0	0	16	10	merge_repeat	trfMask	chromOut	simple
chr1	145192607	C	T	999	11 11 11 11 11 11 11 11	58	0	0	44	29	0	0	41	28	0	0	39	30	0	0	40	29	0	0	42	22	0	0	34	24	0	0	56	29	0	0	52	28	merge_repeat		chromOut
chr1	145569679	G	T	999	11 11 11 11 11 11 11 11	31	0	0	21	24	0	0	13	19	0	0	21	23	0	0	15	26	0	0	22	23	1	0	17	13	0	0	22	24	0	0	17	32	merge_repeat	trfMask	chromOut	simple
chr1	148051521	C	A	999	11 11 11 11 11 11 11 11	22	0	0	15	11	0	0	15	7	0	0	30	8	0	0	19	8	0	1	28	8	0	0	25	6	0	0	16	8	0	0	19	10	merge_repeat				nested
chr1	148388954	G	C	999	11 11 11 11 11 11 11 11	38	0	0	25	17	0	0	27	14	0	0	28	14	0	0	28	22	0	0	30	26	0	0	16	22	0	0	26	18	0	0	25	18	merge_repeat		chromOut
chr1	148426227	C	G	999	11 11 11 11 11 11 11 11	48	0	0	24	41	0	0	18	50	0	0	24	43	0	0	19	32	0	0	25	23	0	0	23	37	0	0	24	37	0	0	20	41
chr1	148426228	G	C	999	11 11 11 11 11 11 11 11	48	0	0	24	42	0	0	18	50	0	0	24	43	0	0	19	32	0	0	25	23	0	0	23	37	0	0	24	37	0	0	20	41
chr1	149429345	T	C	999	11 11 11 11 11 11 11 11	54	0	0	30	24	0	0	33	45	0	0	26	47	0	0	38	35	0	0	29	46	0	0	30	42	0	0	29	38	0	0	31	37
chr1	149446953	C	T	999	11 11 11 11 11 11 11 11	37	0	0	20	17	0	0	15	29	0	0	20	18	0	0	26	23	0	0	25	28	0	0	18	26	0	0	16	24	0	0	18	29	merge_repeat		chromOut
chr1	149774308	T	C	999	11 11 11 11 11 11 11 11	60	0	0	38	35	0	0	36	36	0	0	39	35	0	0	32	36	0	0	37	45	0	0	32	28	0	0	30	37	0	0	36	49
chr1	151205517	A	T	999	11 11 11 11 11 11 11 11	26	0	0	21	15	0	0	19	8	0	0	27	11	0	0	24	9	0	0	17	15	0	0	21	20	0	0	14	12	0	0	20	15	merge_repeat					segmentDup
chr1	151205528	C	T	999	11 11 11 11 11 11 11 11	26	0	0	21	15	0	0	20	8	0	0	27	11	0	0	24	9	0	0	18	15	0	0	22	20	0	0	14	12	0	0	21	15	merge_repeat					segmentDup
chr1	152239986	T	G	999	11 11 11 11 11 11 11 11	31	0	0	13	30	0	0	11	31	0	0	9	26	0	0	13	29	0	0	15	30	0	0	7	24	0	0	7	28	0	0	10	26
chr1	152682047	T	C	999	11 11 11 11 11 11 11 11	56	0	0	30	40	0	0	39	31	0	0	36	31	0	0	38	18	0	0	38	35	0	0	30	36	0	0	38	34	0	0	38	28
chr1	155206104	A	T	999	11 11 11 11 11 11 11 11	34	0	0	17	18	0	0	13	21	0	0	14	22	0	0	25	25	0	0	19	31	0	0	24	20	0	0	19	27	0	0	26	25	merge_repeat			simple
chr1	155342044	C	T	999	11 11 11 11 11 11 11 11	48	0	0	32	33	0	0	41	27	0	0	24	40	0	0	35	31	1	0	29	41	0	0	24	35	0	0	32	27	0	0	18	30	merge_repeat		chromOut
chr1	155342047	C	A	999	11 11 11 11 11 11 11 11	48	0	0	32	32	0	0	41	26	0	0	25	39	0	0	34	31	0	0	31	40	0	0	24	35	0	0	32	27	0	0	18	30	merge_repeat		chromOut
chr1	155502208	C	T	999	11 11 11 11 11 11 11 11	38	0	0	28	19	0	0	32	18	0	1	22	17	0	0	35	30	0	0	24	29	0	0	23	25	0	0	21	17	0	0	28	27	merge_repeat		chromOut
chr1	155502209	T	C	999	11 11 11 11 11 11 11 11	39	0	0	28	22	0	0	32	20	0	1	21	19	0	0	32	33	0	0	24	30	0	0	23	25	0	0	21	18	0	0	28	31	merge_repeat		chromOut
chr1	155811560	A	C	999	11 11 11 11 11 11 11 11	40	0	0	19	29	0	0	23	24	0	0	22	24	0	0	22	35	0	0	25	32	0	0	19	33	0	0	22	36	0	0	18	22
chr1	155904321	T	C	999	11 11 11 11 11 11 11 11	62	0	0	31	31	0	0	50	26	0	0	43	25	0	0	54	31	0	0	34	30	0	0	39	32	0	0	43	27	0	0	34	28
chr1	156095872	G	A	999	11 11 11 11 11 11 11 11	51	0	0	33	26	0	0	30	41	0	0	30	32	0	0	30	32	0	0	37	43	0	0	21	30	0	0	34	45	0	0	38	34	merge_repeat		chromOut		nested
chr1	158179504	C	A	999	11 11 11 11 11 11 11 11	37	0	0	35	12	0	0	38	15	0	0	24	13	0	0	28	17	0	0	38	20	0	0	33	24	0	0	47	13	0	0	34	14	merge_repeat		chromOut
chr1	160000576	C	T	999	11 11 11 11 11 11 11 11	43	0	0	23	20	0	0	30	27	0	0	17	31	0	0	28	32	0	0	29	30	0	0	26	27	0	0	25	25	0	0	23	21	merge_repeat	trfMask	chromOut	simple
chr1	160650872	G	A	999	11 11 11 11 11 11 11 11	47	0	0	25	22	0	0	47	34	0	0	45	22	0	0	35	31	0	0	32	32	0	0	29	31	0	0	37	20	0	0	32	26	merge_repeat		chromOut		nested
chr1	160705762	A	G	999	11 11 11 11 11 11 11 11	50	0	0	35	30	0	0	47	22	0	0	43	19	0	0	39	39	0	0	42	24	0	0	26	24	0	0	44	36	0	0	33	30
chr1	160829329	A	C	999	11 11 11 11 11 11 11 11	57	0	0	48	41	0	0	42	30	0	0	33	24	0	0	35	28	0	0	37	33	0	0	31	40	0	0	43	44	0	0	42	30
chr1	161213521	T	C	999	11 11 11 11 11 11 11 11	44	0	0	17	47	0	0	18	37	0	0	22	36	0	0	25	37	0	0	29	44	0	0	9	35	0	0	23	46	0	0	20	38
chr1	161213532	A	T	999	11 11 11 11 11 11 11 11	44	0	0	21	51	0	0	22	35	0	0	24	36	0	0	26	35	0	0	29	46	0	0	11	33	0	0	24	44	0	0	19	40
chr1	161270085	C	A	999	11 11 11 11 11 11 11 11	47	0	0	16	31	0	0	26	37	0	0	31	32	0	0	21	32	0	0	23	37	0	0	25	31	0	0	24	32	0	0	28	35
chr1	161270104	C	A	999	11 11 11 11 11 11 11 11	48	0	0	20	28	0	0	24	39	0	0	31	27	0	0	24	29	0	0	21	37	0	0	28	30	0	0	22	33	0	0	30	33
chr1	161428359	C	A	999	11 11 11 11 11 11 11 11	45	0	0	22	23	0	0	26	21	0	0	18	29	0	0	31	23	0	0	32	20	0	0	22	28	0	0	24	28	0	0	25	28	merge_repeat		chromOut
chr1	161428435	T	C	999	11 11 11 11 11 11 11 11	42	0	0	20	22	0	0	29	25	0	0	24	30	0	0	26	29	0	0	32	28	0	0	23	25	0	0	25	34	0	0	27	23	merge_repeat		chromOut
chr1	161731964	C	G	999	11 11 11 11 11 11 11 11	40	0	0	26	23	0	0	21	27	0	0	19	26	0	0	21	23	0	0	33	35	0	0	24	24	0	0	25	26	0	0	18	22
chr1	162338295	T	C	999	11 11 11 11 11 11 11 11	49	0	0	32	32	0	0	23	29	0	0	35	34	0	0	36	40	0	0	36	26	0	0	20	29	0	0	43	25	0	0	29	27
chr1	162361745	C	G	999	11 11 11 11 11 11 11 11	36	0	0	22	27	0	0	33	27	0	0	31	30	0	0	51	23	0	0	40	26	0	0	17	22	0	0	20	18	0	0	15	21
chr1	162580812	G	T	999	11 11 11 11 11 11 11 11	20	0	0	12	18	0	0	12	17	0	0	7	23	0	0	10	22	0	0	9	30	0	0	5	31	0	0	8	12	0	0	8	16	merge_repeat		chromOut
chr1	163049770	A	C	999	11 11 11 11 11 11 11 11	49	0	0	33	25	0	0	30	33	0	0	36	39	0	0	24	25	0	0	37	33	0	0	33	24	0	0	37	30	0	0	31	30	merge_repeat		chromOut		nested
chr1	167157977	A	T	999	11 11 11 11 11 11 11 11	21	0	0	8	13	0	0	11	18	0	0	14	18	0	0	11	16	0	0	14	18	0	0	14	26	0	0	7	16	0	0	14	26	merge_repeat		chromOut
chr1	167157992	A	G	999	11 11 11 11 11 11 11 11	26	0	0	12	14	0	0	14	18	0	0	19	19	0	0	14	21	0	0	18	15	0	0	16	27	0	0	11	17	0	0	15	21	merge_repeat		chromOut
chr1	167160228	G	C	999	11 11 11 11 11 11 11 11	33	0	0	28	13	0	0	27	20	0	0	26	24	0	0	24	29	0	0	28	17	0	0	15	24	0	0	22	19	0	0	17	16	merge_repeat		chromOut		nested
chr1	167161126	G	T	999	11 11 11 11 11 11 11 11	57	0	0	37	25	0	0	38	19	0	0	36	30	0	0	34	36	0	0	35	26	0	0	36	26	0	0	45	32	0	0	37	25	merge_repeat		chromOut		nested
chr1	167548545	A	G	999	11 11 11 11 11 11 11 11	33	0	0	25	26	0	0	27	19	0	0	23	17	0	0	31	31	0	0	40	22	0	0	27	19	0	0	39	19	0	0	20	13	merge_repeat		chromOut
chr1	167607029	T	A	999	11 11 11 11 11 11 11 11	27	0	0	17	11	0	0	15	23	0	0	19	20	0	0	15	25	0	0	15	23	0	0	16	16	0	0	12	19	0	0	15	12
chr1	167607032	C	A	999	11 11 11 11 11 11 11 11	27	0	0	17	11	0	0	15	23	0	0	19	20	0	0	15	25	0	0	15	23	0	0	16	16	0	0	12	19	0	0	15	12
chr1	167629311	G	T	999	11 11 11 11 11 11 11 11	33	0	0	12	30	0	0	10	32	0	0	10	23	0	0	21	31	0	0	24	33	0	0	14	31	0	0	9	37	0	0	10	41
chr1	167677390	T	C	999	11 11 11 11 11 11 11 11	39	0	0	29	16	0	0	39	30	0	0	23	16	0	0	35	27	0	0	34	33	0	0	17	24	0	0	30	18	0	0	22	23
chr1	168341811	C	A	999	11 11 11 11 11 11 11 11	44	0	0	30	14	0	0	27	27	0	0	25	33	0	0	36	27	0	0	30	28	0	0	20	24	0	0	32	34	0	0	27	31
chr1	169795104	A	G	999	11 11 11 11 11 11 11 11	35	0	0	17	23	0	0	14	22	0	0	16	34	0	0	22	29	0	0	19	31	0	0	17	24	0	0	19	27	0	0	14	21	merge_repeat		chromOut
chr1	169870564	C	G	999	11 11 11 11 11 11 11 11	36	0	0	24	27	0	0	27	38	0	0	24	42	0	0	26	31	0	0	18	18	0	0	22	32	0	0	18	37	0	0	21	24
chr1	170005408	C	A	999	11 11 11 11 11 11 11 11	31	0	0	21	14	0	0	25	19	2	0	18	30	0	0	23	28	0	0	20	30	0	0	24	22	0	1	19	22	1	1	17	12
chr1	171225520	C	A	999	11 11 11 11 11 11 11 11	41	0	0	19	22	0	0	28	21	0	0	26	22	0	0	39	21	0	0	39	27	0	0	22	29	0	0	27	31	0	0	30	21
chr1	171225521	T	C	999	11 11 11 11 11 11 11 11	42	0	0	19	23	0	0	28	21	0	0	26	22	0	0	39	21	0	0	39	27	0	0	22	29	0	0	27	32	0	0	30	22
chr1	171225530	C	A	999	11 11 11 11 11 11 11 11	42	0	0	21	21	0	0	32	22	0	0	28	20	0	0	40	23	0	0	36	25	0	0	25	34	0	0	26	33	0	0	32	23
chr1	171225552	C	A	999	11 11 11 11 11 11 11 11	41	0	0	21	22	0	0	35	21	0	0	24	17	0	0	38	22	0	0	37	31	0	0	26	34	0	0	29	27	0	1	33	23
chr1	171265681	T	A	999	11 11 11 11 11 11 11 11	39	0	0	19	21	0	0	7	37	0	0	16	29	0	0	12	34	0	0	15	34	0	0	19	34	0	0	15	24	0	0	13	28	merge_repeat		chromOut		nested
chr1	171332238	A	G	999	11 11 11 11 11 11 11 11	59	0	0	35	41	0	0	39	44	0	0	42	36	0	0	43	44	0	0	27	35	0	0	24	35	0	0	41	38	0	0	33	40
chr1	171348225	T	C	999	11 11 11 11 11 11 11 11	34	0	0	14	23	0	0	19	15	0	0	16	20	0	0	19	24	0	0	31	28	0	0	16	31	0	0	14	31	0	0	17	34
chr1	171348227	T	C	999	11 11 11 11 11 11 11 11	35	0	0	14	23	0	0	19	16	0	0	16	20	0	0	19	25	0	0	31	28	0	0	16	31	0	0	14	30	0	0	17	33
chr1	171671983	G	A	999	11 11 11 11 11 11 11 11	53	0	0	24	29	0	0	30	27	0	0	32	29	0	0	39	35	0	0	30	30	0	0	27	35	0	0	37	34	0	0	29	30	merge_repeat		chromOut
chr1	171708964	C	A	999	11 11 11 11 11 11 11 11	20	0	0	13	14	0	0	12	16	0	0	9	11	0	0	10	21	0	0	15	13	0	0	16	26	0	0	13	16	0	0	12	11	merge_repeat		chromOut		nested
chr1	171709222	A	T	999	11 11 11 11 11 11 11 11	47	0	0	38	17	0	1	35	20	0	0	30	21	0	0	31	17	0	0	29	18	0	0	32	26	0	0	42	19	0	0	43	18	merge_repeat		chromOut		nested
chr1	171709241	T	C	999	11 11 11 11 11 11 11 11	47	0	0	37	17	0	0	35	21	0	0	29	23	0	0	31	16	0	0	29	22	0	0	37	24	0	0	46	19	0	0	43	22	merge_repeat		chromOut		nested
chr1	171709295	C	A	999	11 11 11 11 11 11 11 11	56	0	0	31	25	0	0	36	25	0	0	39	24	0	0	35	22	0	0	30	33	0	0	43	34	0	0	49	34	0	0	42	29	merge_repeat		chromOut		nested
chr1	171754293	C	A	999	11 11 11 11 11 11 11 11	29	0	0	12	21	0	0	12	36	0	0	18	26	0	0	21	24	0	0	19	23	0	0	8	21	0	1	15	24	0	0	15	38	merge_repeat		chromOut		nested
chr1	171754336	A	T	999	11 11 11 11 11 11 11 11	24	0	0	12	14	0	0	14	24	0	0	22	18	0	1	23	16	0	0	20	10	0	0	10	14	0	0	15	15	0	0	19	28	merge_repeat		chromOut		nested
chr1	171811871	C	A	999	11 11 11 11 11 11 11 11	54	0	0	31	23	0	0	35	36	0	0	43	33	0	0	28	29	0	0	37	24	0	0	38	32	0	0	34	25	0	0	26	28	merge_repeat		chromOut		nested
chr1	171815037	G	A	999	11 11 11 11 11 11 11 11	32	0	0	21	23	0	0	25	30	0	0	17	26	0	0	19	19	0	0	23	26	0	0	16	16	0	0	21	24	0	0	22	21	merge_repeat	trfMask	chromOut	simple
chr1	171815064	T	A	999	11 11 11 11 11 11 11 11	25	0	0	24	20	0	0	29	28	0	0	23	22	0	0	20	18	0	0	19	23	0	0	13	12	0	0	21	26	0	0	23	17	merge_repeat	trfMask	chromOut	simple
chr1	171815655	C	G	999	11 11 11 11 11 11 11 11	40	0	0	28	19	0	0	30	17	0	0	24	18	0	0	22	18	0	0	36	26	0	0	31	15	0	0	28	20	0	0	31	21
chr1	171815656	C	A	999	11 11 11 11 11 11 11 11	40	0	0	28	17	0	0	30	17	0	0	24	17	0	1	22	17	0	0	36	25	0	0	32	15	0	0	28	20	0	0	31	20
chr1	171815669	C	A	999	11 11 11 11 11 11 11 11	39	0	0	31	17	0	0	29	16	0	0	26	18	0	0	26	16	0	0	35	28	0	0	26	13	0	0	27	21	0	0	30	23
chr1	171815785	C	A	999	11 11 11 11 11 11 11 11	34	0	0	24	18	0	0	23	22	0	0	18	16	0	0	30	17	0	0	21	26	0	0	14	20	0	0	25	22	0	0	30	26
chr1	171815890	G	T	999	11 11 11 11 11 11 11 11	41	0	0	16	29	0	0	17	24	0	0	27	25	0	0	21	26	0	0	23	35	0	0	28	32	0	0	28	29	0	0	17	28
chr1	171815906	A	C	999	11 11 11 11 11 11 11 11	42	0	0	17	28	0	0	14	28	0	0	29	24	0	0	20	23	0	0	26	36	0	0	26	31	0	0	28	25	0	0	17	25
chr1	171839380	G	T	999	11 11 11 11 11 11 11 11	47	0	0	30	31	0	0	28	32	0	0	24	32	0	0	32	37	0	0	30	25	0	0	20	27	0	0	30	32	0	0	25	25	merge_repeat	trfMask	chromOut	simple
chr1	171839744	G	A	999	11 11 11 11 11 11 11 11	42	0	0	30	22	0	0	24	28	0	0	20	25	0	0	32	24	0	0	31	23	0	0	21	21	0	0	25	20	0	0	24	31
chr1	171839800	G	T	999	11 11 11 11 11 11 11 11	47	0	0	36	28	0	0	23	29	0	0	30	23	0	0	21	28	0	0	31	26	0	0	22	25	0	0	29	18	0	0	36	38
chr1	171839805	G	T	999	11 11 11 11 11 11 11 11	43	0	0	33	27	0	0	21	27	0	0	27	20	0	0	19	27	0	0	29	24	0	0	21	22	0	0	27	17	0	0	35	37
chr1	171839806	G	C	999	11 11 11 11 11 11 11 11	44	0	0	34	27	0	0	22	27	0	0	27	19	0	0	20	27	0	0	29	24	0	0	22	22	0	0	30	17	0	0	35	37
chr1	171839832	G	C	999	11 11 11 11 11 11 11 11	45	0	0	34	34	0	0	30	28	0	0	31	26	0	0	19	31	0	0	29	26	0	0	23	22	0	0	28	20	0	0	39	41
chr1	171839853	G	T	999	11 11 11 11 11 11 11 11	46	0	0	31	34	0	0	26	24	0	0	31	22	0	0	18	36	0	0	31	27	0	0	23	25	0	0	26	20	0	0	39	43
chr1	171839926	G	T	999	11 11 11 11 11 11 11 11	46	0	0	29	28	0	0	36	26	0	0	35	20	0	0	28	29	0	0	25	23	0	0	22	25	0	0	23	23	0	0	33	24
chr1	171839942	G	T	999	11 11 11 11 11 11 11 11	36	0	0	26	22	0	0	36	25	0	0	32	22	0	0	30	26	0	0	28	22	0	0	18	18	0	0	18	24	0	0	28	18
chr1	171839945	G	T	999	11 11 11 11 11 11 11 11	36	0	0	26	22	0	0	35	25	0	0	31	22	0	0	30	26	0	0	28	22	0	0	18	18	0	0	18	23	0	0	28	19
chr1	171839960	G	T	999	11 11 11 11 11 11 11 11	38	0	0	25	25	0	0	36	28	0	0	35	20	0	0	31	33	0	0	30	23	0	0	21	17	0	0	21	27	0	0	32	21
chr1	171839977	G	C	999	11 11 11 11 11 11 11 11	41	0	0	23	25	0	0	31	28	0	0	36	21	0	0	31	32	0	0	29	23	0	0	22	19	0	0	23	26	0	0	33	21
chr1	171839985	G	A	999	11 11 11 11 11 11 11 11	33	0	0	18	23	0	0	26	28	0	0	27	20	0	0	26	28	0	0	22	24	0	0	20	13	0	0	21	24	0	0	29	18
chr1	171839986	A	G	999	11 11 11 11 11 11 11 11	33	0	0	18	23	0	0	26	28	1	0	27	20	0	0	26	28	0	0	22	24	0	0	20	13	0	0	21	24	0	0	28	18
chr1	171839987	G	T	999	11 11 11 11 11 11 11 11	33	0	0	18	23	0	0	25	28	0	0	27	20	0	0	26	28	0	0	22	24	0	0	20	13	0	0	20	24	0	0	29	18
chr1	171839988	G	T	999	11 11 11 11 11 11 11 11	33	0	0	18	23	0	0	26	28	0	0	27	20	0	0	26	28	0	0	22	24	0	0	20	13	0	0	21	24	0	0	29	18
chr1	171839992	G	T	999	11 11 11 11 11 11 11 11	33	0	0	18	23	0	0	26	29	0	0	28	20	0	0	28	29	0	0	22	28	0	0	20	13	0	0	22	28	0	0	28	18
chr1	171888356	C	G	999	11 11 11 11 11 11 11 11	33	0	0	26	9	0	0	22	14	0	0	23	10	0	0	24	16	0	0	23	18	0	0	33	20	0	0	23	11	0	0	22	13	merge_repeat		chromOut		nested
chr1	171888429	C	G	999	11 11 11 11 11 11 11 11	43	0	0	29	20	0	0	31	21	0	0	25	27	0	0	28	30	0	0	19	28	0	0	27	37	0	0	22	24	0	0	18	25	merge_repeat		chromOut		nested
chr1	171903336	C	A	999	11 11 11 11 11 11 11 11	28	0	0	27	9	0	0	12	16	0	0	24	12	0	0	33	13	0	0	25	7	0	0	24	13	0	0	32	20	0	0	27	10	merge_repeat		chromOut		nested
chr1	171903341	G	A	999	11 11 11 11 11 11 11 11	28	0	0	28	12	0	0	12	16	0	0	22	11	0	0	30	13	0	0	24	6	0	0	26	15	0	0	32	19	0	0	30	10	merge_repeat		chromOut		nested
chr1	171903351	C	A	999	11 11 11 11 11 11 11 11	28	0	0	28	16	0	0	12	16	0	0	25	14	0	0	30	14	0	0	27	6	0	0	28	13	0	0	31	22	0	0	29	13	merge_repeat		chromOut		nested
chr1	171954162	A	C	999	11 11 11 11 11 11 11 11	37	0	0	45	9	0	0	27	18	0	0	25	12	0	0	31	11	0	0	33	22	0	0	27	12	0	0	29	16	0	0	30	12	merge_repeat		chromOut		nested
chr1	171954172	G	T	999	11 11 11 11 11 11 11 11	39	0	0	47	10	0	0	26	19	0	0	25	14	0	0	30	9	0	0	29	24	0	0	27	13	0	0	29	13	0	0	31	13	merge_repeat		chromOut		nested
chr1	171985364	G	T	999	11 11 11 11 11 11 11 11	39	0	0	36	14	0	0	31	12	0	0	32	25	0	0	25	24	0	0	30	18	0	0	33	22	0	0	29	10	0	0	38	19	merge_repeat		chromOut
chr1	171985366	G	A	999	11 11 11 11 11 11 11 11	39	0	0	37	15	0	0	31	12	0	0	31	24	0	0	26	23	0	0	30	19	0	0	34	22	0	0	29	10	0	0	39	19	merge_repeat		chromOut
chr1	172301789	C	A	999	11 11 11 11 11 11 11 11	37	0	0	31	20	0	0	33	13	0	0	21	16	0	0	29	18	0	0	29	18	0	0	33	18	0	0	26	25	0	0	32	10
chr1	172311485	G	T	999	11 11 11 11 11 11 11 11	33	0	0	16	17	0	0	20	25	0	0	16	22	0	0	29	37	0	0	17	21	0	0	20	25	0	0	14	24	0	0	24	24
chr1	172460788	G	T	999	11 11 11 11 11 11 11 11	43	0	0	26	32	0	0	27	22	0	1	32	32	0	0	32	23	0	0	45	17	0	0	16	27	0	0	34	22	0	1	26	30	merge_repeat			simple
chr1	172460789	T	G	999	11 11 11 11 11 11 11 11	43	0	0	26	32	0	0	27	22	0	1	32	32	0	0	32	23	0	0	45	17	0	0	16	27	0	0	34	22	0	1	26	30	merge_repeat			simple
chr1	172460790	G	T	999	11 11 11 11 11 11 11 11	43	0	0	26	32	0	0	25	22	0	1	32	32	0	0	32	23	0	0	45	17	0	0	16	27	0	0	34	22	0	1	26	30	merge_repeat			simple
chr1	172673606	A	G	999	11 11 11 11 11 11 11 11	23	0	0	13	22	0	0	13	21	0	0	14	20	0	0	6	17	0	0	15	20	0	1	11	19	0	0	13	14	0	0	12	11	merge_repeat		chromOut		nested
chr1	173298747	A	G	999	11 11 11 11 11 11 11 11	39	0	0	36	21	0	0	29	13	0	0	32	13	0	0	39	32	0	0	34	23	0	0	33	25	0	0	28	11	0	0	35	22	merge_repeat					segmentDup
chr1	173342696	C	A	999	11 11 11 11 11 11 11 11	48	0	0	29	32	0	0	33	40	0	0	27	23	0	0	33	37	0	0	27	29	0	0	27	28	0	0	22	29	0	0	24	24
chr1	173349458	C	A	999	11 11 11 11 11 11 11 11	21	0	0	18	18	0	0	16	13	0	0	15	18	0	0	20	13	0	0	13	21	0	0	16	18	0	0	11	10	0	0	12	12
chr1	173355166	C	T	999	11 11 11 11 11 11 11 11	37	0	0	22	33	0	0	29	27	0	0	11	26	0	0	31	35	0	0	30	31	0	0	20	17	0	0	33	36	0	0	30	27	merge_repeat	trfMask	chromOut	simple
chr1	173369674	A	G	999	11 11 11 11 11 11 11 11	47	0	0	31	28	0	0	35	25	0	0	33	32	0	0	35	23	0	0	23	30	0	0	33	25	0	0	31	18	0	0	21	26
chr1	173852046	T	G,A	999	11 12 12 12 12 12 12 12	22	0	0	13	14	0	0	18	12	0	0	10	13	0	0	12	10	0	0	12	11	0	0	12	10	0	0	15	14	0	1	8	13	merge_repeat		chromOut	simple	nested	segmentDup
chr1	175368546	T	G	999	11 11 11 11 11 11 11 11	21	0	0	20	12	0	0	22	4	0	0	15	6	0	0	33	12	0	0	25	10	0	0	32	10	0	0	18	6	0	0	29	9	merge_repeat	trfMask	chromOut	simple
chr1	175368550	T	G	999	11 11 11 11 11 11 11 11	21	0	0	19	14	0	0	20	4	0	0	14	7	0	0	32	12	0	0	25	13	0	0	31	11	0	0	17	7	0	1	29	9	merge_repeat	trfMask	chromOut	simple
chr1	175368554	T	G	999	11 11 11 11 11 11 11 11	21	0	0	19	15	0	0	18	6	0	0	14	7	0	0	32	12	0	0	25	13	0	0	30	11	0	0	17	7	0	1	28	10	merge_repeat	trfMask	chromOut	simple
chr1	175368558	T	G	999	11 11 11 11 11 11 11 11	21	0	0	19	16	0	0	18	6	0	0	14	7	0	0	30	12	0	0	25	13	0	0	30	13	0	0	17	8	0	0	24	11	merge_repeat	trfMask	chromOut	simple
chr1	175368562	T	G	999	11 11 11 11 11 11 11 11	22	0	0	17	16	0	0	17	7	0	0	14	8	0	0	29	12	0	0	26	14	0	0	29	14	0	0	15	8	0	0	24	11	merge_repeat	trfMask	chromOut	simple
chr1	175368566	T	G	999	11 11 11 11 11 11 11 11	24	0	0	16	17	0	0	18	8	0	0	15	10	0	0	29	12	0	0	27	15	0	0	28	15	0	0	15	9	0	1	23	12	merge_repeat	trfMask	chromOut	simple
chr1	175454171	A	G	999	11 11 11 11 11 11 11 11	22	0	0	20	2	0	0	21	6	0	0	27	4	0	0	23	6	0	0	23	7	0	0	20	9	0	0	29	8	0	0	24	7
chr1	176032030	C	T	999	11 11 11 11 11 11 11 11	38	0	0	26	23	0	0	21	17	0	0	39	17	0	0	34	17	0	0	30	24	0	0	21	30	0	0	27	20	0	0	30	15	merge_repeat		chromOut
chr1	177738475	C	T	999	11 11 11 11 11 11 11 11	27	0	0	15	18	0	0	12	19	0	0	18	16	0	0	17	16	0	0	20	18	0	0	19	16	0	0	19	17	0	0	18	9	merge_repeat	trfMask	chromOut	simple
chr1	177738487	C	T	999	11 11 11 11 11 11 11 11	28	0	0	16	18	0	0	11	22	1	0	18	16	0	1	13	14	0	0	18	17	0	0	20	16	0	0	14	16	0	0	18	12	merge_repeat	trfMask	chromOut	simple
chr1	179051773	A	T	999	11 11 11 11 11 11 11 11	39	0	0	22	17	0	0	26	24	0	0	26	16	0	0	21	25	0	0	25	26	0	0	20	24	0	0	22	26	0	0	20	23	merge_repeat		chromOut
chr1	179712271	T	A	999	11 11 11 11 11 11 11 11	24	0	0	18	14	0	0	13	14	0	0	13	15	0	0	14	16	0	0	17	25	0	0	17	7	0	0	16	16	0	0	12	19	merge_repeat	trfMask	chromOut	simple
chr1	179734356	C	A	999	11 11 11 11 11 11 11 11	24	0	0	27	2	0	0	27	8	0	0	20	8	0	0	26	13	0	0	23	13	0	0	18	6	0	0	28	9	0	0	24	6
chr1	179761408	T	C	999	11 11 11 11 11 11 11 11	50	0	0	45	34	0	0	23	27	0	0	30	36	0	0	27	24	0	0	24	34	0	0	38	30	0	0	28	28	0	0	32	24	merge_repeat		chromOut
chr1	179763226	T	A	999	11 11 11 11 11 11 11 11	66	0	0	35	37	0	0	35	31	0	0	31	35	0	0	48	29	0	0	36	38	0	0	39	28	0	0	37	34	0	0	36	40
chr1	180066700	C	T	999	11 11 11 11 11 11 11 11	58	0	0	46	33	0	0	46	30	0	0	39	41	0	0	29	33	0	0	33	27	0	0	33	25	0	0	37	43	0	0	36	30
chr1	180265368	A	G	999	11 11 11 11 11 11 11 11	40	0	0	32	47	0	0	26	37	0	0	21	32	0	0	20	31	0	0	19	28	0	0	20	20	0	0	21	26	0	0	25	28
chr1	180574884	G	A	999	11 11 11 11 11 11 11 11	24	0	0	17	12	0	0	18	6	0	0	17	10	0	0	16	21	0	0	11	15	0	0	22	12	0	0	15	12	0	0	20	8	merge_repeat	trfMask		simple
chr1	180980973	G	A	999	11 11 11 11 11 11 11 11	32	0	0	17	15	0	0	20	22	0	0	24	26	0	0	18	17	0	0	32	14	0	0	21	26	0	0	32	20	0	0	21	14
chr1	181318003	A	C	999	11 11 11 11 11 11 11 11	38	0	0	23	26	0	0	28	32	0	0	42	19	0	0	36	27	0	0	37	26	0	0	25	30	0	0	32	18	0	0	17	21
chr1	182631562	T	A	999	11 11 11 11 11 11 11 11	40	0	0	29	28	0	0	39	31	0	0	40	24	0	0	19	21	0	0	34	37	1	0	43	29	0	0	40	26	0	0	36	39	merge_repeat		chromOut
chr1	182980766	A	G	999	11 11 11 11 11 11 11 11	49	0	0	28	21	0	0	33	22	0	0	28	22	0	0	35	27	0	0	29	34	0	0	25	32	0	0	40	24	0	0	28	30
chr1	182982777	G	C	999	11 11 11 11 11 11 11 11	41	0	0	29	18	0	0	23	25	0	0	30	28	0	0	27	21	0	0	29	27	0	0	36	25	0	0	24	17	0	0	35	33
chr1	182982874	G	C	999	11 11 11 11 11 11 11 11	43	0	0	29	26	0	0	19	24	0	0	21	24	0	0	33	22	0	0	32	27	0	0	21	34	0	0	33	23	0	0	26	27	merge_repeat		chromOut
chr1	182982880	G	C	999	11 11 11 11 11 11 11 11	44	0	0	29	28	0	0	21	25	0	0	22	22	0	0	32	22	0	0	31	26	0	0	19	33	0	0	33	24	0	0	27	26	merge_repeat		chromOut
chr1	182983084	G	T	999	11 11 11 11 11 11 11 11	34	0	0	24	29	0	0	21	25	0	0	17	29	0	0	23	28	0	0	24	29	0	0	21	24	0	0	15	19	0	0	21	28
chr1	182984037	T	A	999	11 11 11 11 11 11 11 11	42	0	0	28	22	0	0	18	28	0	0	29	27	0	0	33	25	0	0	29	30	0	0	23	19	0	0	33	19	0	0	30	31
chr1	182984061	T	G	999	11 11 11 11 11 11 11 11	45	0	0	27	22	0	0	21	24	0	0	29	24	0	0	29	30	0	0	28	30	0	0	23	23	0	0	27	23	0	0	27	26
chr1	182985574	G	T	999	11 11 11 11 11 11 11 11	29	0	0	21	11	0	0	28	20	0	0	22	19	0	0	27	16	0	0	30	30	0	0	16	20	0	0	20	22	0	0	12	17
chr1	182985575	G	T	999	11 11 11 11 11 11 11 11	29	0	0	21	11	0	0	28	20	0	0	22	19	0	0	27	16	0	0	30	30	0	0	16	20	0	0	20	22	0	0	12	17
chr1	182985577	G	C	999	11 11 11 11 11 11 11 11	29	0	0	21	11	0	0	28	20	0	0	22	19	0	0	27	16	0	0	30	30	0	0	15	20	0	0	20	22	0	0	12	17
chr1	182985594	G	C	999	11 11 11 11 11 11 11 11	31	0	0	20	11	0	0	31	21	0	0	22	21	0	0	32	21	0	0	29	32	0	0	14	25	0	0	23	24	0	0	16	17
chr1	182985603	G	C	999	11 11 11 11 11 11 11 11	32	0	0	20	13	0	0	33	21	0	0	24	21	0	0	32	21	0	0	28	28	0	0	13	25	0	0	24	23	0	0	18	14
chr1	182985630	G	C	999	11 11 11 11 11 11 11 11	33	0	0	17	16	0	0	31	28	0	0	26	18	0	0	37	29	0	0	28	30	0	0	12	27	0	0	25	25	0	0	21	18
chr1	183038789	A	T	999	11 11 11 11 11 11 11 11	31	0	0	27	20	0	0	25	14	0	0	14	17	0	0	31	35	0	0	22	29	0	0	21	24	0	0	25	25	0	0	24	18
chr1	183109084	G	A	999	11 11 11 11 11 11 11 11	51	0	0	35	23	0	0	27	24	0	0	41	21	0	0	27	29	0	0	38	24	0	0	38	23	0	0	28	24	0	0	28	28
chr1	183276669	A	G	999	11 11 11 11 11 11 11 11	35	0	0	24	20	0	0	34	27	0	0	22	15	0	0	26	32	0	0	21	24	0	0	16	19	0	0	33	20	0	0	32	27
chr1	183299440	A	T	999	11 11 11 11 11 11 11 11	103	0	0	16	149	0	0	28	161	0	0	24	103	0	0	13	93	0	0	17	86	0	0	40	107	0	0	31	88	0	0	20	128	merge_repeat		chromOut
chr1	183299441	A	T	999	11 11 11 11 11 11 11 11	103	0	0	16	149	0	1	27	156	0	0	24	102	0	0	13	93	0	0	17	86	0	0	40	107	0	0	31	86	0	0	20	130	merge_repeat		chromOut
chr1	183326982	C	A	999	11 11 11 11 11 11 11 11	53	0	0	29	46	0	0	32	46	0	0	39	48	0	0	38	53	0	0	32	46	0	0	36	43	0	0	26	27	0	0	25	44
chr1	183336602	A	T	999	11 11 11 11 11 11 11 11	38	0	0	33	30	0	0	43	19	0	0	29	21	0	0	41	23	0	0	42	21	0	0	26	17	0	0	32	15	0	0	21	17	merge_repeat		chromOut
chr1	183379051	C	G	999	11 11 11 11 11 11 11 11	39	0	0	22	22	0	0	17	33	0	0	21	39	0	0	26	35	0	0	23	28	0	0	18	21	0	0	16	38	0	0	18	21	merge_repeat		chromOut
chr1	183379055	G	A	999	11 11 11 11 11 11 11 11	36	0	0	22	23	0	0	16	30	0	0	20	38	0	0	26	35	0	0	23	28	0	0	18	18	0	1	16	36	0	0	18	21	merge_repeat		chromOut
chr1	183379058	T	A	999	11 11 11 11 11 11 11 11	37	0	0	21	23	0	0	16	30	0	0	20	38	0	0	26	37	0	0	23	28	0	0	18	19	0	0	16	37	0	0	18	21	merge_repeat		chromOut
chr1	183379059	C	A	999	11 11 11 11 11 11 11 11	37	0	0	21	23	0	0	16	30	0	0	20	38	0	0	26	37	0	0	23	28	0	0	18	19	0	0	16	37	0	0	18	21	merge_repeat		chromOut
chr1	183451150	G	A	999	11 11 11 11 11 11 11 11	39	0	0	22	19	0	0	21	23	0	0	24	23	0	0	20	30	0	0	25	31	0	0	29	23	0	0	24	15	0	0	26	16
chr1	183451151	G	A	999	11 11 11 11 11 11 11 11	39	0	0	22	19	0	0	22	23	0	0	24	23	0	0	20	30	0	0	25	31	0	0	29	23	0	0	24	15	0	0	26	16
chr1	183451152	C	A	999	11 11 11 11 11 11 11 11	39	0	0	22	19	0	0	22	23	0	0	24	23	0	0	20	30	0	0	25	31	0	0	29	23	0	0	24	15	0	0	26	16
chr1	183452794	T	C	999	11 11 11 11 11 11 11 11	42	0	0	27	23	0	0	20	22	0	0	19	32	0	0	16	39	0	0	22	37	0	0	14	31	0	0	25	35	0	0	18	29
chr1	183676221	G	C	999	11 11 11 11 11 11 11 11	40	0	0	26	24	0	0	25	18	0	0	34	17	0	0	24	16	0	0	26	24	0	0	25	17	0	0	22	22	0	0	21	19	merge_repeat		chromOut		nested
chr1	183840230	A	T	999	11 11 11 11 11 11 11 11	23	0	0	21	12	0	0	16	7	0	0	26	13	0	0	32	5	0	0	27	12	0	0	25	8	0	0	23	13	0	0	18	12	merge_repeat	trfMask	chromOut	simple
chr1	183894527	A	T	999	11 11 11 11 11 11 11 11	55	0	0	32	30	0	0	26	30	0	0	28	42	0	0	30	33	0	0	32	23	0	0	48	40	0	0	39	39	0	0	29	32
chr1	184285311	A	C	999	11 11 11 11 11 11 11 11	46	0	0	22	29	0	0	26	26	0	0	19	34	0	0	23	40	0	0	24	35	0	0	18	28	0	0	25	41	0	0	26	36	merge_repeat	trfMask	chromOut	simple	nested
chr1	185958467	T	C	999	11 11 11 11 11 11 11 11	38	0	0	21	17	0	0	36	31	0	0	20	25	0	0	32	33	0	0	32	25	0	0	21	37	0	0	29	27	0	0	37	24
chr1	186201358	A	C	999	11 11 11 11 11 11 11 11	62	0	0	28	36	0	0	44	42	0	0	32	32	0	0	34	37	0	0	42	24	0	0	30	35	0	0	46	31	0	0	35	27	merge_repeat		chromOut		nested
chr1	186489219	G	T	999	11 11 11 11 11 11 11 11	52	0	0	25	44	0	0	41	37	0	0	25	37	0	0	27	27	0	0	34	37	0	0	24	29	0	0	32	27	0	0	25	27
chr1	187472877	T	G	999	11 11 11 11 11 11 11 11	33	0	0	20	13	0	0	18	26	0	0	23	25	0	0	21	37	0	0	29	25	0	0	25	29	0	0	28	28	0	0	30	23	merge_repeat	trfMask	chromOut	simple
chr1	191294551	A	T	999	11 11 11 11 11 11 11 11	21	0	0	8	14	0	0	8	17	0	0	7	16	0	0	12	20	0	0	13	26	0	0	10	17	0	0	7	15	0	0	6	15	merge_repeat	trfMask	chromOut	simple
chr1	191962451	G	A	999	11 11 11 11 11 11 11 11	48	0	0	48	22	0	0	35	17	0	0	35	15	0	0	35	13	0	0	45	21	0	0	43	15	0	0	41	12	0	0	38	15
chr1	191962453	G	A	999	11 11 11 11 11 11 11 11	49	0	0	48	22	0	0	36	17	0	0	35	16	0	0	36	13	0	0	46	21	0	0	44	14	0	0	42	12	0	0	38	15
chr1	191962478	G	A	999	11 11 11 11 11 11 11 11	49	0	0	39	23	0	0	39	19	0	0	30	19	0	0	44	17	0	0	51	28	0	0	49	17	0	0	44	14	0	0	37	25	merge_repeat		chromOut	simple
chr1	191962486	G	A	999	11 11 11 11 11 11 11 11	52	0	0	33	24	0	0	40	20	0	0	33	19	0	0	43	19	0	0	44	29	0	0	47	16	0	0	45	14	0	0	40	25	merge_repeat		chromOut	simple
chr1	191962490	G	T	999	11 11 11 11 11 11 11 11	53	0	0	33	26	0	0	40	20	0	0	33	20	0	0	43	19	0	0	46	29	0	0	47	16	0	0	45	15	0	0	41	26	merge_repeat		chromOut	simple
chr1	192053855	A	G	999	11 11 11 11 11 11 11 11	34	0	0	24	22	0	0	19	30	0	0	17	28	0	0	26	28	0	0	21	23	0	0	17	25	0	0	24	18	0	0	13	21
chr1	192053870	A	G	999	11 11 11 11 11 11 11 11	31	0	0	26	24	0	0	22	30	0	0	14	30	0	0	24	28	0	0	24	30	0	0	18	26	0	0	26	19	0	0	14	17
chr1	192053952	A	G	999	11 11 11 11 11 11 11 11	38	0	0	25	28	0	0	20	35	0	0	21	27	0	0	21	34	0	0	34	34	0	0	15	29	0	0	24	23	0	0	22	16
chr1	192136854	C	A	999	11 11 11 11 11 11 11 11	37	0	0	23	21	0	0	20	30	0	0	24	19	0	0	23	23	0	0	27	22	0	0	20	17	0	0	20	23	0	0	25	28
chr1	192136857	C	T	999	11 11 11 11 11 11 11 11	35	0	0	23	19	0	0	19	29	0	0	26	19	0	0	22	21	0	0	28	21	0	0	21	14	0	0	20	22	0	0	24	25
chr1	192136858	C	G	999	11 11 11 11 11 11 11 11	38	0	0	23	21	0	0	19	30	0	0	26	20	0	0	22	23	0	0	28	25	0	0	21	17	0	0	20	23	0	0	24	27
chr1	192142353	A	G	999	11 11 11 11 11 11 11 11	41	0	0	27	25	0	0	34	22	0	0	27	24	0	0	32	36	0	0	32	20	0	0	29	18	0	0	19	22	0	0	23	33	merge_repeat		chromOut
chr1	192300598	T	A	999	11 11 11 11 11 11 11 11	36	0	0	22	14	0	0	31	25	0	0	35	29	0	0	40	11	0	0	30	21	0	0	28	22	0	0	33	19	0	0	27	26
chr1	194006250	G	C	999	11 11 11 11 11 11 11 11	51	0	0	22	34	0	0	25	26	0	0	25	31	0	0	27	48	0	0	22	34	0	0	31	37	0	0	29	35	0	0	26	37
chr1	195166209	A	C	999	11 11 11 11 11 11 11 11	46	0	0	31	24	0	0	42	38	0	0	30	25	0	0	29	36	0	0	31	44	0	0	25	27	0	0	27	19	0	1	29	24
chr1	195170583	T	A	999	11 11 11 11 11 11 11 11	61	0	0	38	23	0	0	50	25	0	0	59	38	0	0	46	25	0	0	38	26	0	0	36	31	0	0	34	33	0	0	42	27
chr1	195170588	A	G	999	11 11 11 11 11 11 11 11	61	0	0	39	22	0	0	47	23	0	0	56	37	0	0	45	26	0	0	38	25	0	0	37	30	0	0	34	32	0	0	39	28
chr1	195170614	T	G	999	11 11 11 11 11 11 11 11	60	0	0	38	25	0	0	45	26	0	0	54	33	0	0	40	26	0	0	36	31	0	0	30	35	0	0	28	32	0	0	34	26