This test differentiates immune cell sub-populations via flow cytometry.
Description | MP Term or Comment |
---|---|
increased CD4-positive T cell number | MP:0008074 |
decreased CD4-positive T cell number | MP:0008075 |
etc.. |
This protocol requires several steps in the collection, preparation and analysis of the samples. Each one is detailed separately below.
Note that two different PBS solutions are required for the protocol below, one with Ca2+ and Mg2+, another without Ca2+ and Mg2+.
Set up the analyser to aim acquire 300,000 viable events (live cells) for each of Panels 1 and 2. 500,000 are recommended for panel 2 in order to increase robustness of myeloid population of low frequencies (macrophages, DCs).
Parameters | Gating steps | ||||||
---|---|---|---|---|---|---|---|
Panel A live leukocyte count | |||||||
T cells (panel A) | number of live leukocytes | CD5+ | CD161- | ||||
NKT cells (panel A) | number of live leukocytes | CD5+ | CD161+ | ||||
NK cells (panel A) | number of live leukocytes | CD5- | CD161+ | ||||
Others | number of live leukocytes | CD5- | CD161- | ||||
CD4 T cells | number of live leukocytes | CD5+ | CD161- | CD4+ | CD8- | ||
CD8 T cells | number of live leukocytes | CD5+ | CD161- | CD4- | CD8+ | ||
DN T cells | number of live leukocytes | CD5+ | CD161- | CD4- | CD8- | ||
CD4 NKT cells | number of live leukocytes | CD5+ | CD161+ | CD4+ | CD8- | ||
CD8 NKT cells | number of live leukocytes | CD5+ | CD161+ | CD4- | CD8+ | ||
DN NKT cells | number of live leukocytes | CD5+ | CD161+ | CD4- | CD8- | ||
CD4 CD25+ T cells | number of CD5+ | CD161- | CD4+ | CD8- | CD25+ | ||
CD4 CD25- T cells | number of CD5+ | CD161- | CD4+ | CD8- | CD25- | ||
CD8 CD25+ T cells | number of CD5+ | CD161- | CD4- | CD8+ | CD25+ | ||
CD8 CD25- T cells | number of CD5+ | CD161- | CD4- | CD8+ | CD25- | ||
DN CD25+ T cells | number of CD5+ | CD161- | CD4- | CD8- | CD25+ | ||
DN CD25- T cells | number of CD5+ | CD161- | CD4- | CD8- | CD25- | ||
CD4 CD25+ NKT cells | number of CD5+ | CD161+ | CD4+ | CD8- | CD25+ | ||
CD4 CD25- NKT cells | number of CD5+ | CD161+ | CD4+ | CD8- | CD25- | ||
CD8 CD25+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8+ | CD25+ | ||
CD8 CD25- NKT cells | number of CD5+ | CD161+ | CD4- | CD8+ | CD25- | ||
DN CD25+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8- | CD25+ | ||
DN CD25- NKT cells | number of CD5+ | CD161+ | CD4- | CD8- | CD25- | ||
CD4 CD44+CD62L- T cells | number of CD5+ | CD161- | CD4+ | CD8- | CD44+ | CD62L- | |
CD4 CD44+CD62L+ T cells | number of CD5+ | CD161- | CD4+ | CD8- | CD44+ | CD62L+ | |
CD4 CD44-CD62L+ T cells | number of CD5+ | CD161- | CD4+ | CD8- | CD44- | CD62L+ | |
CD8 CD44+CD62L- T cells | number of CD5+ | CD161- | CD4- | CD8+ | CD44+ | CD62L- | |
CD8 CD44+CD62L+ T cells | number of CD5+ | CD161- | CD4- | CD8+ | CD44+ | CD62L+ | |
CD8 CD44-CD62L+ T cells | number of CD5+ | CD161- | CD4- | CD8+ | CD44- | CD62L+ | |
DN CD44+CD62L- T cells | number of CD5+ | CD161- | CD4- | CD8- | CD44+ | CD62L- | |
DN CD44+CD62L+ T cells | number of CD5+ | CD161- | CD4- | CD8- | CD44+ | CD62L+ | |
DN CD44-CD62L+ T cells | number of CD5+ | CD161- | CD4- | CD8- | CD44- | CD62L+ | |
CD4 CD44+CD62L- NKT cells | number of CD5+ | CD161+ | CD4+ | CD8- | CD44+ | CD62L- | |
CD4 CD44+CD62L+ NKT cells | number of CD5+ | CD161+ | CD4+ | CD8- | CD44+ | CD62L+ | |
CD4 CD44-CD62L+ NKT cells | number of CD5+ | CD161+ | CD4+ | CD8- | CD44- | CD62L+ | |
CD8 CD44+CD62L- NKT cells | number of CD5+ | CD161+ | CD4- | CD8+ | CD44+ | CD62L- | |
CD8 CD44+CD62L+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8+ | CD44+ | CD62L+ | |
CD8 CD44-CD62L+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8+ | CD44- | CD62L+ | |
DN CD44+CD62L- NKT cells | number of CD5+ | CD161+ | CD4- | CD8- | CD44+ | CD62L- | |
DN CD44+CD62L+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8- | CD44+ | CD62L+ | |
DN CD44-CD62L+ NKT cells | number of CD5+ | CD161+ | CD4- | CD8- | CD44- | CD62L+ |
Parameters | Gating steps | |||||
---|---|---|---|---|---|---|
Panel B live leukocyte count | ||||||
Neutrophils | Live | CD11b+ | Ly6G+ | |||
Monocytes | Not Granulocytes | CD11b+ | Ly6C High | |||
Eosinophils | Not Monocytes | CD11b+ | SSC-H High | |||
NK Cells (panel B) | Not Eosinophils | CD161+ | CD19- | CD5- | ||
NK Subsets (Q1) | Not Eosinophils | CD161+ | CD19- | CD5- | CD11b- | Ly6C+ |
NK Subsets (Q2) | Not Eosinophils | CD161+ | CD19- | CD5- | CD11b+ | Ly6C+ |
NK Subsets (Q3) | Not Eosinophils | CD161+ | CD19- | CD5- | CD11b- | Ly6C- |
NK Subsets (Q4) | Not Eosinophils | CD161+ | CD19- | CD5- | CD11b+ | Ly6C- |
NKT Cells (panel B) | Not Eosinophils | CD161+ | CD19- | CD5+ | ||
NKT Subsets (Q1) | Not Eosinophils | CD161+ | CD19- | CD5+ | CD11b- | Ly6C+ |
NKT Subsets (Q3) | Not Eosinophils | CD161+ | CD19- | CD5+ | CD11b- | Ly6C- |
T Cells (panel B) | Not Eosinophils | CD161- | CD5+ | |||
T Subset | Not Eosinophils | CD161- | CD5+ | Ly6C+ | ||
B Cells | Not Eosinophils | MHCII+ | CD19+ | |||
B1B Cells | Not Eosinophils | MHCII+ | CD19+ | CD5+ | ||
B2B Cells | Not Eosinophils | MHCII+ | CD19+ | CD5- | ||
pre-B Cells | Not Eosinophils | MHCII+ | CD19+ | CD5- | CD23- | CD21/35 low |
cDCs | Not Eosinophils | MHCII+ | CD19- | CD11c+ | ||
cDCs CD11b Type | Not Eosinophils | MHCII+ | CD19- | CD11c+ | CD11b+ | |
RP Macrophage (CD19- CD11c-) | Not Eosinophils | MHCII+ | CD19- | CD11c- |
Name | Type | Increment | Option | Unit | Data Type | Derived |
---|---|---|---|---|---|---|
Spleen weight | simpleParameter | g | FLOAT | |||
Percentage of live gated events in Panel A | simpleParameter | % | FLOAT | |||
T cells (panel A) | simpleParameter | INT | ||||
NKT cells (panel A) | simpleParameter | INT | ||||
NK cells (panel A) | simpleParameter | INT | ||||
Others | simpleParameter | INT | ||||
CD4 T cells | simpleParameter | INT | ||||
CD8 T cells | simpleParameter | INT | ||||
DN T cells | simpleParameter | INT | ||||
CD4 NKT cells | simpleParameter | INT | ||||
CD8 NKT cells | simpleParameter | INT | ||||
DN NKT cells | simpleParameter | INT | ||||
CD4 CD25+ T cells | simpleParameter | INT | ||||
CD4 CD25- T cells | simpleParameter | INT | ||||
CD8 CD25+ T cells | simpleParameter | INT | ||||
CD8 CD25- T cells | simpleParameter | INT | ||||
DN CD25+ T cells | simpleParameter | INT | ||||
DN CD25- T cells | simpleParameter | INT | ||||
CD4 CD25+ NKT cells | simpleParameter | INT | ||||
CD4 CD25- NKT cells | simpleParameter | INT | ||||
CD8 CD25+ NKT cells | simpleParameter | INT | ||||
CD8 CD25- NKT cells | simpleParameter | INT | ||||
DN CD25+ NKT cells | simpleParameter | INT | ||||
DN CD25- NKT cells | simpleParameter | INT | ||||
Total number of acquired events in Panel A | simpleParameter | INT | ||||
Total number of acquired events in Panel B | simpleParameter | INT | ||||
CD4 CD44+CD62L- T cells | simpleParameter | INT | ||||
CD4 CD44+CD62L+ T cells | simpleParameter | INT | ||||
CD4 CD44-CD62L+ T cells | simpleParameter | INT | ||||
CD8 CD44+CD62L- T cells | simpleParameter | INT | ||||
CD8 CD44+CD62L+ T cells | simpleParameter | INT | ||||
CD8 CD44-CD62L+ T cells | simpleParameter | INT | ||||
DN CD44+CD62L- T cells | simpleParameter | INT | ||||
DN CD44+CD62L+ T cells | simpleParameter | INT | ||||
DN CD44-CD62L+ T cells | simpleParameter | INT | ||||
CD4 CD44+CD62L- NKT cells | simpleParameter | INT | ||||
CD4 CD44+CD62L+ NKT cells | simpleParameter | INT | ||||
CD4 CD44-CD62L+ NKT cells | simpleParameter | INT | ||||
CD8 CD44+CD62L- NKT cells | simpleParameter | INT | ||||
CD8 CD44+CD62L+ NKT cells | simpleParameter | INT | ||||
CD8 CD44-CD62L+ NKT cells | simpleParameter | INT | ||||
DN CD44+CD62L- NKT cells | simpleParameter | INT | ||||
DN CD44+CD62L+ NKT cells | simpleParameter | INT | ||||
DN CD44-CD62L+ NKT cells | simpleParameter | INT | ||||
Percentage of live gated events in Panel B | simpleParameter | % | FLOAT | |||
Neutrophils | simpleParameter | INT | ||||
Monocytes | simpleParameter | INT | ||||
Eosinophils | simpleParameter | INT | ||||
NK Cells (panel B) | simpleParameter | INT | ||||
NK Subsets (Q1) | simpleParameter | INT | ||||
NK Subsets (Q2) | simpleParameter | INT | ||||
NK Subsets (Q3) | simpleParameter | INT | ||||
NK Subsets (Q4) | simpleParameter | INT | ||||
NKT Cells (panel B) | simpleParameter | INT | ||||
NKT Subsets (Q1) | simpleParameter | INT | ||||
NKT Subsets (Q3) | simpleParameter | INT | ||||
T cells (panel B) | simpleParameter | INT | ||||
T Subset | simpleParameter | INT | ||||
B Cells | simpleParameter | INT | ||||
B1B Cells | simpleParameter | INT | ||||
B2B Cells | simpleParameter | INT | ||||
Follicular B Cells (CD21/35+) | simpleParameter | INT | ||||
Transitional B Cells (CD21/35 low) | simpleParameter | INT | ||||
MZB (CD21/35 high) | simpleParameter | INT | ||||
cDCs | simpleParameter | INT | ||||
cDCs CD11b Type | simpleParameter | INT | ||||
RP Macrophage (CD19- CD11c-) | simpleParameter | INT | ||||
Equipment name | procedureMetadata | Fortessa_1 | TEXT | |||
Equipment manufacturer | procedureMetadata | BD Biosciences | TEXT | |||
Equipment model | procedureMetadata | BD LSRFortessa Cell Analyzer | TEXT | |||
CS&T Bead lot | procedureMetadata | 31519 | TEXT | |||
Anesthesia | procedureMetadata | Injection narcosis with Sodium Pentobarbital (Somnopentyl) | TEXT | |||
Cell digestion | procedureMetadata | manual | TEXT | |||
Cell digestion agent | procedureMetadata | Collagenase D | TEXT | |||
Cell digestion agent manufacturer | procedureMetadata | Roche | TEXT | |||
Cell digestion agent catalog number | procedureMetadata | #11088858001 | TEXT | |||
Cell counting | procedureMetadata | pre-lysis | TEXT | |||
Cell counting equipment manufacturer | procedureMetadata | Life Technologies | TEXT | |||
Cell counting equipment model | procedureMetadata | Countess Automated Cell Counter | TEXT | |||
Cell counting equipment name | procedureMetadata | Countess_1 | TEXT | |||
Cell lysis buffer manufacturer | procedureMetadata | eBioscience | TEXT | |||
Cell lysis buffer catalog number | procedureMetadata | 00-4300-54 | TEXT | |||
Date and time of sacrifice | procedureMetadata | DATETIME | ||||
Date and time of sample preparation | procedureMetadata | DATETIME | ||||
Sample storage temperature until analysis (in Celsius) | procedureMetadata | 4 | ℃ | FLOAT | ||
Balanced salt solution type | procedureMetadata | PBS | TEXT | |||
Balanced salt solution manufacturer | procedureMetadata | Wako | TEXT | |||
Balanced salt solution catalog number | procedureMetadata | 041-20211 | TEXT | |||
RPMI manufacturer | procedureMetadata | none used | TEXT | |||
RPMI catalog number | procedureMetadata | none used | TEXT | |||
DNAse I manufacturer | procedureMetadata | Sigma | TEXT | |||
DNAse I catalog number | procedureMetadata | DN25 | TEXT | |||
Dead cell exclusion dye | procedureMetadata | Sytox Blue | TEXT | |||
Dead cell exclusion dye manufacturer | procedureMetadata | Life Technologies | TEXT | |||
Dead cell exclusion dye catalog number | procedureMetadata | S11348 | TEXT | |||
Cell digestion temperature (in Celsius) | procedureMetadata | 37 | ℃ | TEXT | ||
Automated analysis | procedureMetadata | No | TEXT |