Combined SHIRPA and Dysmorphology [LA_CSD_001]

Purpose

SHIRPA and dysmorphology were originally always separate assessments. However they have recently been combined as assessments, so that they take place at the same time.

The purpose of the assessments is to examine mice for obvious physical characteristics, behaviors and morphological abnormalities.

Descriptions include abnormal locomotion/appearance/behavior/reflex reactions.

Experimental Design

Equipment

  1. Viewing Jar
  2. SHIRPA arena
  3. Grid under the Viewing Jar and above arena
  4. Click Box
  5. Forceps
  6. Ruler
  7. Tube for contact righting
  8. Photo and/or video camera
  9. Balance

Procedure

  1. Allow the mice to acclimatise to the phenotyping room for a period of 30 minutes prior to testing.
  2. Throughout the test note any vocalisation, aggression, salivation or unexpected behaviours.
  3. During this test, note any unexpected dysmorphological characteristics (morphological irregularities are recorded by video sequences or photos).
  4. Place the mouse in a clear cylinder over a wire grid and observe for activity and tremors.
  5. Transfer the mouse out of the cylinder by removing the metal plate whilst positioning 30cm over an arena and record the transfer arousal.
  6. Record the number of 10cm2 squares the mouse moves into in the first 30 seconds in the arena (locomotor activity).
  7. Allow the mouse to move freely around the arena whilst being observed for gait and tail elevation.
  8. Hold the click box approximately 30cm above the arena and press the button, record the response of the mouse.
  9. Pick up the mouse by the tail and observe for limp grasping and trunk curl. Trunk curl must only be recorded if the mouse curls forward without twisting its body, bending to one side is not scored as a trunk curl.
  10. Compress of third digit of the right hindlimb with fine forceps and record the withdrawal reflex.
  11. Hold the mouse and measure the body length (from the tip of the nose to the base of the tail) with a ruler.
  12. Place the mouse in a small transparent tube. Turn the tube quickly so the mouse is fully upside down and record if the mouse rights itself.
  13. Record any vocalisation and/or aggression which were observed throughout the entire test.

Notes

  1. If wiping down with ethanol prior to the use of equipment, make sure no ethanol residue remains as the ethanol may affect the behaviour of the animals.
  2. The validity of results obtained from behavioural phenotyping is largely dependent on methods of animal husbandry. It is important that individuals following this procedure are experienced and aware of the animal's welfare, and is familiar with the animal being tested, in order to reduce the anxiety levels of the animal prior to testing.
  3. The majority of mouse behavioural studies are age/sex/strain dependent. It is important to keep these parameters comparable throughout a single experiment.
  4. Environmental factors may contribute to the levels of anxiety within the mouse. The temperature, humidity, ventilation, noise intensity and light intensity must be maintained at levels appropriate for mice. It is essential that the mice be kept in a uniform environment before and after testing to avoid anomalous results being obtained.
  5. It is recommended that all phenotyping experimentation is conducted at approximately the same time of day because physiological and biochemical parameters change throughout the day.
  6. When a number of mice are tested continuously, residual odours from the equipment used in the preceding test may affect the test results. The floor and walls of the arena, ruler, and metal net should be wiped clean before introducing the next mouse. To prevent infection, the equipment should be washed with water at the completion of the day's tests. Some specific pathogen-free facilities use ultraviolet irradiation when tests are not being performed. Care needs to be taken, however, to ensure that ultraviolet irradiation does not crack any acrylate equipment covered with residual alcohol.

Parameters & Metadata

DOWNLOAD (EXCEL)

Name Type Increment Option Unit Data Type Derived
In the Viewing Jar
Activity (body position) simpleParameter 0 = Inactive / 1 = As expected / 2 = Increased activity TEXT
Tremor simpleParameter 0 = No shaking / 1 = Mild shaking / 2 = Marked shaking TEXT
In the Arena
Transfer arousal simpleParameter 0 = Extended freeze / 1 = As expected / 2 = Immediate movement TEXT
Locomotor activity simpleParameter Squares crossed INT
Gait simpleParameter 0 = Normal / 1 = Fluid but abnormal / 2 = Limited movement only / 3 = Incapacitated (unable to walk) TEXT
Tail elevation simpleParameter 0 = Dragging / 1 = As expected / 2 = Straub/elevated tail TEXT
Startle response simpleParameter 0 = None / 1 = Preyer's reflex / 2 = Jump less than 1 cm / 3 = Jump more than 1 cm / 4 = Response without Preyer's reflex TEXT
Touch escape simpleParameter 0 = No response / 1 = Mild / 2 = Moderate / 3 = Vigorous TEXT
Above the Arena 1
Positional passivity simpleParameter 0 = Struggles when held by the tail / 1 = Struggles when held by the neck / 2 = Struggles when laid supine / 3 = Struggles when held by the hindlimb / 4 = No struggle TEXT
Trunk curl simpleParameter 0 = Absent / 1 = Present TEXT
Limb grasp simpleParameter 0 = Absent / 1 = Present TEXT
On the arena
Head size simpleParameter 0 = Decreased / 1 = As expected / 2 = Increased TEXT
Head morphology simpleParameter 0 = As expected / 1 = Not as expected TEXT
Snout size simpleParameter 0 = Decreased / 1 = As expected / 2 = Increased TEXT
Ears simpleParameter 0 = As expected / 1 = Absent / 2 = Uneven / 3 = Large / 4 = Small / 5 = Other TEXT
Toe pinch simpleParameter 0 = None / 1 = Slight withdrawal / 2 = Moderate withdrawal, not brisk / 3 = Brisk, rapid withdrawal / 4 = Very brisk repeated extension and flexion TEXT
Above the Arena 2
Body length simpleParameter mm FLOAT
Tail length simpleParameter mm FLOAT
Tail presence simpleParameter 0 = Present / 1 = Absent TEXT
Tail length simpleParameter 0 = Short / 1 = As expected / 2 = Long TEXT
Tail thickness simpleParameter 0 = Decreased / 1 = As expected / 2 = Increased TEXT
Tail morphology simpleParameter 0 = Normal / 1 = Kinked / 2 = Curled / 3 = Other abnormality TEXT
Mouth morphology simpleParameter 0 = As expected / 1 = Not as expected TEXT
Upper lip morphology simpleParameter 0 = As expected / 1 = Not as expected TEXT
Lower lip morphology simpleParameter 0 = As expected / 1 = Not as expected TEXT
Teeth presence simpleParameter 0 = As expected / 1 = Not as expected TEXT
Upper teeth appearance simpleParameter 0 = As expected / 1 = Overgrown / 2 = Small / 3 = Wide / 4 = Different colour / 5 = Other TEXT
Lower teeth appearance simpleParameter 0 = As expected / 1 = Overgrown / 2 = Small / 3 = Wide / 4 = Different colour / 5 = Other TEXT
Salivation simpleParameter 0 = None / 1 = Slight margin of sub-maxillary area / 2 = Wet zone entire sub-maxillary area TEXT
Vibrissae - presence simpleParameter 0 = As expected / 1 = Not as expected TEXT
Vibrissae - appearance simpleParameter 0 = As expected / 1 = Long / 2 = Short / 3 = Curly / 4 = Other TEXT
Genitalia presence simpleParameter 0 = As expected / 1 = Absent TEXT
Genitalia size simpleParameter 0 = Small / 1 = As expected / 2 = Large / 3 = Absent TEXT
Genitalia morphology simpleParameter 0 = As expected / 1 = Not as expected TEXT
Abdominal tone simpleParameter 0 = Flaccid / 1 = As expected / 2 = Increased resistance TEXT
Limb tone simpleParameter 0 = No resistance / 1 = Slight resistance / 2 = Moderate resistance / 3 = Marked resistance / 4 = Extreme resistance TEXT
Forelimbs - position simpleParameter 0 = As expected / 1 = One forelimb only not as expected / 2 = Both forelimbs - not as expected TEXT
Forelimbs - shape simpleParameter 0 = As expected / 1 = One forelimb only - not as expected / 2 = Both forelimbs - not as expected TEXT
Forelimbs - size simpleParameter 0 = Both forelimbs decreased / 1 = One forelimb decreased / 2 = As expected / 3 = One forelimb increased / 4 = Both forelimbs increased TEXT
Forepaw size simpleParameter 0 = Both forepaws decreased / 1 = One forepaw decreased / 2 = As expected / 3 = One forepaw increased / 4 = Both forepaws increased TEXT
Forepaw shape simpleParameter 0 = As expected / 1 = One forepaw not as expected / 2 = Both forepaws not as expected TEXT
Forelimb nail number simpleParameter 0 = Both forelimbs decreased number / 1 = One forelimb decreased number / 2 = As expected / 3 = One forelimb increased number / 4 = Both forelimbs increased number TEXT
Forelimb nail length simpleParameter 0 = Both forelimbs decreased length / 1 = One forelimb decreased length / 2 = As expected / 3 = One forelimb increased length / 4 = Both forelimbs increased length TEXT
Forelimb nail shape simpleParameter 0 = As expected / 1 = One forelimb not as expected / 2 = Both forelimbs not as expected TEXT
Forelimb digit number simpleParameter 0 = Both forelimbs decreased number / 1 = One forelimb decreased number / 2 = As expected / 3 = One forelimb increased number / 4 = Both forelimbs increased number TEXT
Forelimb digit size simpleParameter 0 = As expected / 1 = One forelimb - increased size / 2 = One forelimb - decreased size / 3 = One forelimb - fused / 4 = Both forelimbs - increased size / 5 = Both forelimbs - decreased size / 6 = Both forelimbs - fused TEXT
Forelimb digit shape simpleParameter 0 = As expected / 1 = One forelimb not as expected / 2 = Both forelimbs not as expected TEXT
Hindlimbs - position simpleParameter 0 = As expected / 1 = One hindlimb only not as expected / 2 = Both hindlimbs - not as expected TEXT
Hindlimbs - shape simpleParameter 0 = As expected / 1 = One hindlimb only - not as expected / 2 = Both hindlimbs - not as expected TEXT
Hindlimbs - size simpleParameter 0 = Both hindlimbs decreased / 1 = One hindlimb decreased / 2 = As expected / 3 = One hindlimb increased / 4 = Both hindlimbs increased TEXT
Hindpaw size simpleParameter 0 = Both hindpaws decreased / 1 = One hindpaw decreased / 2 = As expected / 3 = One hindpaw increased / 4 = Both hindpaws increased TEXT
Hindpaw shape simpleParameter 0 = As expected / 1 = One hindpaw not as expected / 2 = Both hindpaws not as expected TEXT
Hindlimb nail number simpleParameter 0 = Both hindlimbs decreased number / 1 = One hindlimb decreased number / 2 = As expected / 3 = One hindlimb increased number / 4 = Both hindlimbs increased number TEXT
Hindlimb nail length simpleParameter 0 = Both hindlimbs decreased length / 1 = One hindlimb decreased length / 2 = As expected / 3 = One hindlimb increased length / 4 = Both hindlimbs increased length TEXT
Hindlimb nail shape simpleParameter 0 = As expected / 1 = One hindlimb not as expected / 2 = Both hindlimbs not as expected TEXT
Hindlimb digit number simpleParameter 0 = Both hindlimbs decreased number / 1 = One hindlimb decreased number / 2 = As expected / 3 = One hindlimb increased number / 4 = Both hindlimbs increased number TEXT
Hindlimb digit size simpleParameter 0 = As expected / 1 = One hindlimb - increased size / 2 = One hindlimb - decreased size / 3 = One hindlimb - fused / 4 = Both hindlimbs - increased size / 5 = Both hindlimbs - decreased size / 6 = Both hindlimbs - fused TEXT
Hindlimb digit shape simpleParameter 0 = As expected / 1 = One hindlimb not as expected / 2 = Both hindlimbs not as expected TEXT
Contact righting simpleParameter 0 = Does not try / 1 = Tries TEXT
Coat - color - back simpleParameter 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other TEXT
Coat - color pattern - back simpleParameter 0 = As expected / 1 = Patch of different colour / 2 = Mottled / 3 = Speckled / 4 = Other TEXT
Coat - hair distribution - back simpleParameter 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other TEXT
Coat - hair texture / appearance - back simpleParameter 0 = As expected / 1 = Not as expected TEXT
Coat - color - head simpleParameter 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other TEXT
Coat - color pattern - head simpleParameter 0 = As expected / 1 = Patch of different colour / 2 = Mottled / 3 = Speckled / 4 = Other TEXT
Coat - hair distribution - head simpleParameter 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other TEXT
Coat - hair texture / appearance - head simpleParameter 0 = As expected / 1 = Not as expected TEXT
Coat - color - abdomen simpleParameter 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other TEXT
Coat - color pattern - abdomen simpleParameter 0 = As expected / 1 = Belly spot / 2 = Patch of different colour / 3 = Mottled / 4 = Speckled / 5 = Other TEXT
Coat - hair distribution - abdomen simpleParameter 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other TEXT
Coat - hair texture / appearance - abdomen simpleParameter 0 = As expected / 1 = Not as expected TEXT
Skin color - whole body simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - whole body simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Skin color - snout simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - snout simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Skin color - ear simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - ear simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Skin color - front paws simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - front paws simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Skin color - back paws simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - back paws simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Skin color - tail simpleParameter 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other TEXT
Skin texture - tail simpleParameter 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other TEXT
Throughout the test
Vocalization simpleParameter 0 = As expected / 1 = Not as expected TEXT
Aggression simpleParameter 0 = As expected / 1 = Excessive aggression TEXT
Head bobbing simpleParameter 0 = Absent / 1 = Present TEXT
Unexpected behaviors simpleParameter 0 = None / 1 = Circling / 2 = Jumping / 3 = Retropulsion / 4 = Other unexpected behavior TEXT
Body weight simpleParameter g FLOAT
BMI simpleParameter FLOAT (Body weight/Body length^2)*1000
Tail ratio simpleParameter FLOAT (Tail length/Body length)
Images seriesMediaParameter IMAGE
Experimenter ID procedureMetadata TEXT
Location of test procedureMetadata TEXT
Number of animals in cage procedureMetadata INT
Number of days since cage changed procedureMetadata INT
Size of squares in arena procedureMetadata cm^2 TEXT