SHIRPA and dysmorphology were originally always separate assessments. However they have recently been combined as assessments, so that they take place at the same time.
The purpose of the assessments is to examine mice for obvious physical characteristics, behaviors and morphological abnormalities.
Descriptions include abnormal locomotion/appearance/behavior/reflex reactions.
Name | Type | Increment | Option | Unit | Data Type | Derived |
---|---|---|---|---|---|---|
In the Viewing Jar | ||||||
Activity (body position) | simpleParameter | 0 = Inactive / 1 = As expected / 2 = Increased activity | TEXT | |||
Tremor | simpleParameter | 0 = No shaking / 1 = Mild shaking / 2 = Marked shaking | TEXT | |||
In the Arena | ||||||
Transfer arousal | simpleParameter | 0 = Extended freeze / 1 = As expected / 2 = Immediate movement | TEXT | |||
Locomotor activity | simpleParameter | Squares crossed | INT | |||
Gait | simpleParameter | 0 = Normal / 1 = Fluid but abnormal / 2 = Limited movement only / 3 = Incapacitated (unable to walk) | TEXT | |||
Tail elevation | simpleParameter | 0 = Dragging / 1 = As expected / 2 = Straub/elevated tail | TEXT | |||
Startle response | simpleParameter | 0 = None / 1 = Preyer's reflex / 2 = Jump less than 1 cm / 3 = Jump more than 1 cm / 4 = Response without Preyer's reflex | TEXT | |||
Touch escape | simpleParameter | 0 = No response / 1 = Mild / 2 = Moderate / 3 = Vigorous | TEXT | |||
Above the Arena 1 | ||||||
Positional passivity | simpleParameter | 0 = Struggles when held by the tail / 1 = Struggles when held by the neck / 2 = Struggles when laid supine / 3 = Struggles when held by the hindlimb / 4 = No struggle | TEXT | |||
Trunk curl | simpleParameter | 0 = Absent / 1 = Present | TEXT | |||
Limb grasp | simpleParameter | 0 = Absent / 1 = Present | TEXT | |||
On the arena | ||||||
Head size | simpleParameter | 0 = Decreased / 1 = As expected / 2 = Increased | TEXT | |||
Head morphology | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Snout size | simpleParameter | 0 = Decreased / 1 = As expected / 2 = Increased | TEXT | |||
Ears | simpleParameter | 0 = As expected / 1 = Absent / 2 = Uneven / 3 = Large / 4 = Small / 5 = Other | TEXT | |||
Toe pinch | simpleParameter | 0 = None / 1 = Slight withdrawal / 2 = Moderate withdrawal, not brisk / 3 = Brisk, rapid withdrawal / 4 = Very brisk repeated extension and flexion | TEXT | |||
Above the Arena 2 | ||||||
Body length | simpleParameter | mm | FLOAT | |||
Tail length | simpleParameter | mm | FLOAT | |||
Tail presence | simpleParameter | 0 = Present / 1 = Absent | TEXT | |||
Tail length | simpleParameter | 0 = Short / 1 = As expected / 2 = Long | TEXT | |||
Tail thickness | simpleParameter | 0 = Decreased / 1 = As expected / 2 = Increased | TEXT | |||
Tail morphology | simpleParameter | 0 = Normal / 1 = Kinked / 2 = Curled / 3 = Other abnormality | TEXT | |||
Mouth morphology | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Upper lip morphology | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Lower lip morphology | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Teeth presence | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Upper teeth appearance | simpleParameter | 0 = As expected / 1 = Overgrown / 2 = Small / 3 = Wide / 4 = Different colour / 5 = Other | TEXT | |||
Lower teeth appearance | simpleParameter | 0 = As expected / 1 = Overgrown / 2 = Small / 3 = Wide / 4 = Different colour / 5 = Other | TEXT | |||
Salivation | simpleParameter | 0 = None / 1 = Slight margin of sub-maxillary area / 2 = Wet zone entire sub-maxillary area | TEXT | |||
Vibrissae - presence | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Vibrissae - appearance | simpleParameter | 0 = As expected / 1 = Long / 2 = Short / 3 = Curly / 4 = Other | TEXT | |||
Genitalia presence | simpleParameter | 0 = As expected / 1 = Absent | TEXT | |||
Genitalia size | simpleParameter | 0 = Small / 1 = As expected / 2 = Large / 3 = Absent | TEXT | |||
Genitalia morphology | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Abdominal tone | simpleParameter | 0 = Flaccid / 1 = As expected / 2 = Increased resistance | TEXT | |||
Limb tone | simpleParameter | 0 = No resistance / 1 = Slight resistance / 2 = Moderate resistance / 3 = Marked resistance / 4 = Extreme resistance | TEXT | |||
Forelimbs - position | simpleParameter | 0 = As expected / 1 = One forelimb only not as expected / 2 = Both forelimbs - not as expected | TEXT | |||
Forelimbs - shape | simpleParameter | 0 = As expected / 1 = One forelimb only - not as expected / 2 = Both forelimbs - not as expected | TEXT | |||
Forelimbs - size | simpleParameter | 0 = Both forelimbs decreased / 1 = One forelimb decreased / 2 = As expected / 3 = One forelimb increased / 4 = Both forelimbs increased | TEXT | |||
Forepaw size | simpleParameter | 0 = Both forepaws decreased / 1 = One forepaw decreased / 2 = As expected / 3 = One forepaw increased / 4 = Both forepaws increased | TEXT | |||
Forepaw shape | simpleParameter | 0 = As expected / 1 = One forepaw not as expected / 2 = Both forepaws not as expected | TEXT | |||
Forelimb nail number | simpleParameter | 0 = Both forelimbs decreased number / 1 = One forelimb decreased number / 2 = As expected / 3 = One forelimb increased number / 4 = Both forelimbs increased number | TEXT | |||
Forelimb nail length | simpleParameter | 0 = Both forelimbs decreased length / 1 = One forelimb decreased length / 2 = As expected / 3 = One forelimb increased length / 4 = Both forelimbs increased length | TEXT | |||
Forelimb nail shape | simpleParameter | 0 = As expected / 1 = One forelimb not as expected / 2 = Both forelimbs not as expected | TEXT | |||
Forelimb digit number | simpleParameter | 0 = Both forelimbs decreased number / 1 = One forelimb decreased number / 2 = As expected / 3 = One forelimb increased number / 4 = Both forelimbs increased number | TEXT | |||
Forelimb digit size | simpleParameter | 0 = As expected / 1 = One forelimb - increased size / 2 = One forelimb - decreased size / 3 = One forelimb - fused / 4 = Both forelimbs - increased size / 5 = Both forelimbs - decreased size / 6 = Both forelimbs - fused | TEXT | |||
Forelimb digit shape | simpleParameter | 0 = As expected / 1 = One forelimb not as expected / 2 = Both forelimbs not as expected | TEXT | |||
Hindlimbs - position | simpleParameter | 0 = As expected / 1 = One hindlimb only not as expected / 2 = Both hindlimbs - not as expected | TEXT | |||
Hindlimbs - shape | simpleParameter | 0 = As expected / 1 = One hindlimb only - not as expected / 2 = Both hindlimbs - not as expected | TEXT | |||
Hindlimbs - size | simpleParameter | 0 = Both hindlimbs decreased / 1 = One hindlimb decreased / 2 = As expected / 3 = One hindlimb increased / 4 = Both hindlimbs increased | TEXT | |||
Hindpaw size | simpleParameter | 0 = Both hindpaws decreased / 1 = One hindpaw decreased / 2 = As expected / 3 = One hindpaw increased / 4 = Both hindpaws increased | TEXT | |||
Hindpaw shape | simpleParameter | 0 = As expected / 1 = One hindpaw not as expected / 2 = Both hindpaws not as expected | TEXT | |||
Hindlimb nail number | simpleParameter | 0 = Both hindlimbs decreased number / 1 = One hindlimb decreased number / 2 = As expected / 3 = One hindlimb increased number / 4 = Both hindlimbs increased number | TEXT | |||
Hindlimb nail length | simpleParameter | 0 = Both hindlimbs decreased length / 1 = One hindlimb decreased length / 2 = As expected / 3 = One hindlimb increased length / 4 = Both hindlimbs increased length | TEXT | |||
Hindlimb nail shape | simpleParameter | 0 = As expected / 1 = One hindlimb not as expected / 2 = Both hindlimbs not as expected | TEXT | |||
Hindlimb digit number | simpleParameter | 0 = Both hindlimbs decreased number / 1 = One hindlimb decreased number / 2 = As expected / 3 = One hindlimb increased number / 4 = Both hindlimbs increased number | TEXT | |||
Hindlimb digit size | simpleParameter | 0 = As expected / 1 = One hindlimb - increased size / 2 = One hindlimb - decreased size / 3 = One hindlimb - fused / 4 = Both hindlimbs - increased size / 5 = Both hindlimbs - decreased size / 6 = Both hindlimbs - fused | TEXT | |||
Hindlimb digit shape | simpleParameter | 0 = As expected / 1 = One hindlimb not as expected / 2 = Both hindlimbs not as expected | TEXT | |||
Contact righting | simpleParameter | 0 = Does not try / 1 = Tries | TEXT | |||
Coat - color - back | simpleParameter | 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other | TEXT | |||
Coat - color pattern - back | simpleParameter | 0 = As expected / 1 = Patch of different colour / 2 = Mottled / 3 = Speckled / 4 = Other | TEXT | |||
Coat - hair distribution - back | simpleParameter | 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other | TEXT | |||
Coat - hair texture / appearance - back | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Coat - color - head | simpleParameter | 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other | TEXT | |||
Coat - color pattern - head | simpleParameter | 0 = As expected / 1 = Patch of different colour / 2 = Mottled / 3 = Speckled / 4 = Other | TEXT | |||
Coat - hair distribution - head | simpleParameter | 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other | TEXT | |||
Coat - hair texture / appearance - head | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Coat - color - abdomen | simpleParameter | 0 = As expected / 1 = White / 2 = Chinchilla / 3 = Agouti / 4 = Grey / 5 = Other | TEXT | |||
Coat - color pattern - abdomen | simpleParameter | 0 = As expected / 1 = Belly spot / 2 = Patch of different colour / 3 = Mottled / 4 = Speckled / 5 = Other | TEXT | |||
Coat - hair distribution - abdomen | simpleParameter | 0 = As expected / 1 = Bald / 2 = Patches of baldness / 3 = Thinning / 4 = Other | TEXT | |||
Coat - hair texture / appearance - abdomen | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Skin color - whole body | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - whole body | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Skin color - snout | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - snout | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Skin color - ear | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - ear | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Skin color - front paws | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - front paws | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Skin color - back paws | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - back paws | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Skin color - tail | simpleParameter | 0 = As expected / 1 = Red / 2 = Pale / 3 = Cyanosed / 4 = Other | TEXT | |||
Skin texture - tail | simpleParameter | 0 = As expected / 1 = Dry / 2 = Flaky / 3 = Greasy / 4 = Other | TEXT | |||
Throughout the test | ||||||
Vocalization | simpleParameter | 0 = As expected / 1 = Not as expected | TEXT | |||
Aggression | simpleParameter | 0 = As expected / 1 = Excessive aggression | TEXT | |||
Head bobbing | simpleParameter | 0 = Absent / 1 = Present | TEXT | |||
Unexpected behaviors | simpleParameter | 0 = None / 1 = Circling / 2 = Jumping / 3 = Retropulsion / 4 = Other unexpected behavior | TEXT | |||
Body weight | simpleParameter | g | FLOAT | |||
BMI | simpleParameter | FLOAT | (Body weight/Body length^2)*1000 | |||
Tail ratio | simpleParameter | FLOAT | (Tail length/Body length) | |||
Images | seriesMediaParameter | IMAGE | ||||
Experimenter ID | procedureMetadata | TEXT | ||||
Location of test | procedureMetadata | TEXT | ||||
Number of animals in cage | procedureMetadata | INT | ||||
Number of days since cage changed | procedureMetadata | INT | ||||
Size of squares in arena | procedureMetadata | cm^2 | TEXT |