Construct and analyse digital X-ray images in immobilised mice using a Faxitron X-Ray system.
Perform steps 1 and 2 unless the mouse is coming from DEXA analysis.
The protocol described herein employs anaesthesia using intraperitoneal (IP) administration.
Name | Type | Increment | Option | Unit | Data Type | Derived |
---|---|---|---|---|---|---|
Skull shape | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Zygomatic bone | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Maxilla/Pre-maxilla | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Mandibles | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Teeth | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Scapulae | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Clavicle | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Humerus | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Radius | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Ulna | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Femur | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Tibia | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Fibula | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Tibia length | simpleParameter | mm | FLOAT | |||
Number of digits | simpleParameter | INT | ||||
Syndactylism | simpleParameter | 0=no syndactylism / 1=Syndactylism / imageOnly / unobservable | TEXT | |||
Brachydactyly | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Digit integrity | simpleParameter | 0=yes / 1=no / imageOnly / unobservable | TEXT | |||
Polysyndactylism | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Number of cervical vertebrae | simpleParameter | INT | ||||
Cervical processes | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Cervical vertebrae morphology | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Number of ribs right | simpleParameter | INT | ||||
Number of ribs left | simpleParameter | INT | ||||
Missing cranial rib | simpleParameter | 0=No / 1=Yes | TEXT | |||
Shape of ribs | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Fusion of ribs | simpleParameter | 0=not fused / 1=fused / imageOnly / unobservable | TEXT | |||
Number of thoracic vertebrae | simpleParameter | INT | ||||
Shape of ribcage | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Thoracic processes | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Thoracic vertebrae morphology | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Number of lumbar vertebrae | simpleParameter | INT | ||||
Lumbar processes | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Lumbar vertebrae morphology | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Pelvis | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Number of pelvic vertebrae | simpleParameter | INT | ||||
Sacral processes | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Pelvic vertebrae morphology | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Caudal processes | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Caudal vertebrae morphology | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Joints | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Shape of spine | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Scoliosis | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Kyphosis | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Lordosis | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Transitional vertebrae | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Processes on vertebrae | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Shape of vertebrae | simpleParameter | 0=normal / 1=abnormal / imageOnly / unobservable | TEXT | |||
Fusion of vertebrae | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Fusion of processes | simpleParameter | 0=no / 1=yes / imageOnly / unobservable | TEXT | |||
Comment on XRay image | simpleParameter | TEXT | ||||
Alive | simpleParameter | TEXT | ||||
Free Ontology | simpleParameter | TEXT | ||||
XRay Images Forepaw | seriesMediaParameter | IMAGE | ||||
XRay Images Skull Lateral Orientation | seriesMediaParameter | IMAGE | ||||
XRay Images Hind Leg and Hip | seriesMediaParameter | IMAGE | ||||
XRay Images Whole Body Lateral Orientation | seriesMediaParameter | Minimum 1 | IMAGE | |||
XRay Images Whole Body Dorso Ventral | seriesMediaParameter | Minimum 1 | IMAGE | |||
XRay Images Skull Dorso Ventral Orientation | seriesMediaParameter | IMAGE | ||||
Xray equipment ID | procedureMetadata | TEXT | ||||
Xray equipment manufacturer | procedureMetadata | TEXT | ||||
Xray equipment model | procedureMetadata | TEXT | ||||
Settings time of exposure | procedureMetadata | s | FLOAT | |||
Settings level | procedureMetadata | TEXT | ||||
Experimenter ID (scan) | procedureMetadata | TEXT | ||||
Experimenter ID (analysis) | procedureMetadata | TEXT | ||||
Voltage settings | procedureMetadata | TEXT | ||||
Date Xray equipment last calibrated | procedureMetadata | DATE |