About Us

●発表論文

  phenotype analyses

  bioinformatics

  Review in Japanese

メンバー

アクセス

 

Maier H1, Schutt C, Steinkamp R, Hurt A, Schneltzer E, Gormanns P, Lengger C, Griffiths M, Melvin D, Agrawal N, Alcantara R, Evans A, Gannon D, Holroyd S, Kipp C, Raj NP, Richardson D, LeBlanc S, Vasseur L, Masuya H, Kobayashi K, Suzuki T, Tanaka N, Wakana S, Walling A, Clary D, Gallegos J, Fuchs H, de Angelis MH, Gailus-Durner V.
Principles and application of LIMS in mouse clinics.
Mamm Genome. 2015 Jul 25.



Karp NA1, Meehan TF2, Morgan H3, Mason JC2, Blake A3, Kurbatova N2, Smedley D1, Jacobsen J1, Mott RF4, Iyer V5, Matthews P5, Melvin DG1, Wells S3, Flenniken AM6, Masuya H7, Wakana S7, White JK8, Lloyd KC9, Reynolds CL10, Paylor R11, West DB12, Svenson KL13, Chesler EJ13, de Angelis MH14, Tocchini-Valentini GP15, Sorg T16, Herault Y16, Parkinson H2, Mallon AM3, Brown SD3.
Applying the ARRIVE Guidelines to an In Vivo Database.
PLoS Biol. 2015 May 20;13(5):e1002151.



Sarntivijai S1, Lin Y2, Xiang Z2, Meehan TF3, Diehl AD4, Vempati UD5, Schurer SC5, Pang C6, Malone J3, Parkinson H3, Liu Y2, Takatsuki T7, Saijo K7, Masuya H7, Nakamura Y7, Brush MH8, Haendel MA8, Zheng J9, Stoeckert CJ9, Peters B10, Mungall CJ11, Carey TE2, States DJ12, Athey BD2, He Y2.
CLO: The cell line ontology.
J Biomed Semantics. 2014 Aug 13;5:37.



Suzuki T1, Furuse T, Yamada I, Motegi H, Kozawa Y, Masuya H, Wakana S.
Pheno-Pub: a total support system for the publication of mouse phenotypic data on the web.
Mamm Genome. 2013 Dec;24(11-12):473-83.



Makita Y1, Kobayashi N, Yoshida Y, Doi K, Mochizuki Y, Nishikata K, Matsushima A, Takahashi S, Ishii M, Takatsuki T, Bhatia R, Khadbaatar Z, Watabe H, Masuya H, Toyoda T.
PosMed: Ranking genes and bioresources based on Semantic Web Association Study.
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W109-14.



Masuya H1.
Roles and applications of biomedical ontologies in experimental animal science.
Exp Anim. 2012;61(4):365-73.



Hiroshi Masuya1,*, Yuko Makita2, Norio Kobayashi2, Koro Nishikata2, Yuko Yoshida2, Yoshiki Mochizuki2, Koji Doi2, Terue Takatsuki1, Kazunori Waki1, Nobuhiko Tanaka1, Manabu Ishii2, Akihiro Matsushima2, Satoshi Takahashi2, Atsushi Hijikata3, Koji Kozaki4, Teiichi Furuichi5, Hideya Kawaji6, Shigeharu Wakana1, Yukio Nakamura1, Atsushi Yoshiki1, Takehide Murata1, Kaoru Fukami-Kobayashi1, Sujatha Mohan3, Osamu Ohara3, Yoshihide Hayashizaki6, Riichiro Mizoguchi4, Yuichi Obata1 and Tetsuro Toyoda2,*
The RIKEN integrated database of mammals.
Nucl. Acids Res. (2011) 39 (suppl 1): D861-D870



Yoshida Y, Makita Y, Heida N, Asano S, Matsushima A, Ishii M, Mochizuki Y, Masuya H, Wakana S, Kobayashi N, Toyoda T.
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.
Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W147-52.


Tanaka N., Waki K., Kaneda H., Suzuki T., Yamada I., Furuse T., Kobayashi K., Motegi H., Toki H., Inoue M., Minowa O., Noda T., Takao K., Miyakawa T., Takahashi A.,Koide T., Wakana S., Masuya H.
SDOP-DB: A comparative standardised-protocol database for mouse phenotypic analyses, Bioinformatics,2010 26: 1133-1134


Schofield PN, Bubela T, Weaver T, Portilla L, Brown SD, Hancock JM, Einhorn D, Tocchini-Valentini G, Hrabe de Angelis M, Rosenthal N;
Post-publication sharing of data and tools.
CASIMIR Rome Meeting participants. Nature. 2009 Sep


Masuya H, Mizoguchi R. Toward fully integration of mouse phenotype information,
Interdisciplinary Ontology 2009 2: 35-44. PDF


Taylor CF, Field D, Sansone S, Apweiler R, Ashburner M, Ball CA, Binz P, Bogue M, Booth T, Brazma A, Brinkman RR, Clark AM, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hardy NW, Hermjakob1 H, Julian RKJ, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Nove1 NL, Leebens-Mack J, Lewis SE, Lord PL, Mallon A, Masuya H, McNally R, Mehrle A, Morrison N, Quackenbush J, Robertson DG, Rocca-Serra P, Rodriguez H, Santoyo-Lopez J, Schober D, Smith B, Snape J, Tipton K, Sterk1 P, Wiemann S
Promoting Coherent Minimum Reporting Requirements for Biological and Biomedical Investigations: The MIBBI Project
Nat Biotechnol. 2008 26:889-896.


Kaminuma E, Masuya H, Miura I, Motegi H, Takahasi KR, Nakazawa M, Matsui M, Gondo Y, Noda T, Shiroishi T , Wakana S , Toyoda T
Objective evaluation measures of marker selection in large-scale SNP genotyping
J Bioinform Comput Biol. 2007 3 1281-1293.


Masuya H, Yoshikawa S, Heida N, Toyoda T, Wakana S and Shiroishi T
PhenoSITE: a web database integrating mouse phenotyping platform and the experimental procedures in mice.
J Bioinform Comput Biol. 2007 5 Special Issue: Making Sense of Mutations Requires Knowledge Management, 1173-1191.


The Mouse Phenotype Database Integration Consortium currently comprises: Hancock JM, Adams NC, Aidinis V, Blake A, Blake JA, Bogue M, Brown SDM, Chesler E, Davidson D, Duran D, Eppig JT, Gailus-Durner V, Gates H, Gkoutos GV, Greenaway S, Angelis MHD, Kollias G, Leblanc S, Lee K, Lengger C, Maier H, Mallon A, Masuya H, Melvin DG, Muler A, Parkinson H, Proctor G, Reuveni E, Schofield P, Shukla A, Smith C, Toyoda T, Vasseur L, Wakana S, Walling A, White J, Wood J, Zouberakis M
Integration of mouse phenome data resources. The Mouse Phenotype Database Integration Consortium.
Mamm Genome. 2007 18:157-163.


Masuya H, Nakai Y, Motegi H, Niinaya N, Kida Y, Kaneko Y, Aritake H, Suzuki N, Ishii J, Koorikawa K, Suzuki T, Inoue M, Kobayashi K, Toki H, Wada Y, Kaneda H, Ishijima J, Takahashi KR, Minowa O, Noda T, Wakana S, Gondo Y, Shiroishi T.
Development and implementation of a database system to manage a large-scale mouse ENU-mutagenesis program, Mamm Genome. 2004 15:404-411.